Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1T0D:B5:B4
Extra
PDB:
ATOM 1 O3' G A 4 7.490 -6.110 4.083 1.00 22.65 O
ATOM 2 P U A 5 7.154 -4.888 3.089 1.00 22.92 P
ATOM 3 OP1 U A 5 8.204 -3.868 3.310 1.00 22.83 O
ATOM 4 OP2 U A 5 5.722 -4.507 3.216 1.00 20.80 O
ATOM 5 O5' U A 5 7.365 -5.492 1.628 1.00 21.93 O
ATOM 6 C5' U A 5 8.647 -5.938 1.201 1.00 18.79 C
ATOM 7 C4' U A 5 8.660 -6.156 -0.296 1.00 17.92 C
ATOM 8 O4' U A 5 7.838 -7.300 -0.652 1.00 17.67 O
ATOM 9 C3' U A 5 8.095 -5.025 -1.138 1.00 17.35 C
ATOM 10 O3' U A 5 9.060 -3.991 -1.307 1.00 16.07 O
ATOM 11 C2' U A 5 7.782 -5.743 -2.448 1.00 17.96 C
ATOM 12 O2' U A 5 8.934 -5.942 -3.246 1.00 21.03 O
ATOM 13 C1' U A 5 7.286 -7.100 -1.943 1.00 17.20 C
ATOM 14 N1 U A 5 5.819 -7.206 -1.867 1.00 18.59 N
ATOM 15 C2 U A 5 5.142 -7.501 -3.039 1.00 17.13 C
ATOM 16 O2 U A 5 5.701 -7.663 -4.109 1.00 17.52 O
ATOM 17 N3 U A 5 3.786 -7.600 -2.920 1.00 18.72 N
ATOM 18 C4 U A 5 3.040 -7.440 -1.788 1.00 20.03 C
ATOM 19 O4 U A 5 1.826 -7.633 -1.842 1.00 18.52 O
ATOM 20 C5 U A 5 3.800 -7.123 -0.612 1.00 20.96 C
ATOM 21 C6 U A 5 5.136 -7.021 -0.692 1.00 19.73 C
ATOM 22 P C A 6 8.599 -2.449 -1.283 1.00 16.83 P
ATOM 23 OP1 C A 6 9.840 -1.648 -1.266 1.00 13.84 O
ATOM 24 OP2 C A 6 7.576 -2.245 -0.218 1.00 15.07 O
ATOM 25 O5' C A 6 7.893 -2.235 -2.698 1.00 17.33 O
TER
ATOM 1 O3' C B 3 4.033 -8.761 8.495 1.00 21.77 O
ATOM 2 P G B 4 3.747 -7.432 7.639 1.00 23.79 P
ATOM 3 OP1 G B 4 4.164 -6.285 8.478 1.00 26.10 O
ATOM 4 OP2 G B 4 2.362 -7.484 7.095 1.00 23.83 O
ATOM 5 O5' G B 4 4.749 -7.528 6.399 1.00 23.27 O
ATOM 6 C5' G B 4 6.152 -7.653 6.605 1.00 23.39 C
ATOM 7 C4' G B 4 6.847 -8.113 5.336 1.00 22.69 C
ATOM 8 O4' G B 4 6.338 -9.414 4.929 1.00 21.47 O
ATOM 9 C3' G B 4 6.660 -7.266 4.085 1.00 21.38 C
ATOM 10 O3' G B 4 7.490 -6.110 4.083 1.00 22.65 O
ATOM 11 C2' G B 4 7.078 -8.253 3.006 1.00 22.22 C
ATOM 12 O2' G B 4 8.482 -8.441 2.938 1.00 21.26 O
ATOM 13 C1' G B 4 6.408 -9.529 3.511 1.00 22.01 C
ATOM 14 N9 G B 4 5.054 -9.639 2.972 1.00 20.94 N
ATOM 15 C8 G B 4 3.868 -9.486 3.646 1.00 21.42 C
ATOM 16 N7 G B 4 2.819 -9.623 2.877 1.00 21.77 N
ATOM 17 C5 G B 4 3.344 -9.882 1.618 1.00 20.17 C
ATOM 18 C6 G B 4 2.691 -10.107 0.378 1.00 20.16 C
ATOM 19 O6 G B 4 1.470 -10.119 0.135 1.00 18.69 O
ATOM 20 N1 G B 4 3.608 -10.330 -0.649 1.00 20.30 N
ATOM 21 C2 G B 4 4.976 -10.331 -0.505 1.00 21.01 C
ATOM 22 N2 G B 4 5.695 -10.572 -1.618 1.00 18.08 N
ATOM 23 N3 G B 4 5.595 -10.113 0.645 1.00 20.19 N
ATOM 24 C4 G B 4 4.723 -9.900 1.658 1.00 21.88 C
ATOM 25 P U B 5 7.154 -4.888 3.089 1.00 22.92 P
ATOM 26 OP1 U B 5 8.204 -3.868 3.310 1.00 22.83 O
ATOM 27 OP2 U B 5 5.722 -4.507 3.216 1.00 20.80 O
ATOM 28 O5' U B 5 7.365 -5.492 1.628 1.00 21.93 O
TER
ATOM 2 P U A 5 7.154 -4.888 3.089 1.00 22.92 P
ATOM 3 OP1 U A 5 8.204 -3.868 3.310 1.00 22.83 O
ATOM 4 OP2 U A 5 5.722 -4.507 3.216 1.00 20.80 O
ATOM 5 O5' U A 5 7.365 -5.492 1.628 1.00 21.93 O
ATOM 6 C5' U A 5 8.647 -5.938 1.201 1.00 18.79 C
ATOM 7 C4' U A 5 8.660 -6.156 -0.296 1.00 17.92 C
ATOM 8 O4' U A 5 7.838 -7.300 -0.652 1.00 17.67 O
ATOM 9 C3' U A 5 8.095 -5.025 -1.138 1.00 17.35 C
ATOM 10 O3' U A 5 9.060 -3.991 -1.307 1.00 16.07 O
ATOM 11 C2' U A 5 7.782 -5.743 -2.448 1.00 17.96 C
ATOM 12 O2' U A 5 8.934 -5.942 -3.246 1.00 21.03 O
ATOM 13 C1' U A 5 7.286 -7.100 -1.943 1.00 17.20 C
ATOM 14 N1 U A 5 5.819 -7.206 -1.867 1.00 18.59 N
ATOM 15 C2 U A 5 5.142 -7.501 -3.039 1.00 17.13 C
ATOM 16 O2 U A 5 5.701 -7.663 -4.109 1.00 17.52 O
ATOM 17 N3 U A 5 3.786 -7.600 -2.920 1.00 18.72 N
ATOM 18 C4 U A 5 3.040 -7.440 -1.788 1.00 20.03 C
ATOM 19 O4 U A 5 1.826 -7.633 -1.842 1.00 18.52 O
ATOM 20 C5 U A 5 3.800 -7.123 -0.612 1.00 20.96 C
ATOM 21 C6 U A 5 5.136 -7.021 -0.692 1.00 19.73 C
ATOM 22 P C A 6 8.599 -2.449 -1.283 1.00 16.83 P
ATOM 23 OP1 C A 6 9.840 -1.648 -1.266 1.00 13.84 O
ATOM 24 OP2 C A 6 7.576 -2.245 -0.218 1.00 15.07 O
ATOM 25 O5' C A 6 7.893 -2.235 -2.698 1.00 17.33 O
TER
ATOM 1 O3' C B 3 4.033 -8.761 8.495 1.00 21.77 O
ATOM 2 P G B 4 3.747 -7.432 7.639 1.00 23.79 P
ATOM 3 OP1 G B 4 4.164 -6.285 8.478 1.00 26.10 O
ATOM 4 OP2 G B 4 2.362 -7.484 7.095 1.00 23.83 O
ATOM 5 O5' G B 4 4.749 -7.528 6.399 1.00 23.27 O
ATOM 6 C5' G B 4 6.152 -7.653 6.605 1.00 23.39 C
ATOM 7 C4' G B 4 6.847 -8.113 5.336 1.00 22.69 C
ATOM 8 O4' G B 4 6.338 -9.414 4.929 1.00 21.47 O
ATOM 9 C3' G B 4 6.660 -7.266 4.085 1.00 21.38 C
ATOM 10 O3' G B 4 7.490 -6.110 4.083 1.00 22.65 O
ATOM 11 C2' G B 4 7.078 -8.253 3.006 1.00 22.22 C
ATOM 12 O2' G B 4 8.482 -8.441 2.938 1.00 21.26 O
ATOM 13 C1' G B 4 6.408 -9.529 3.511 1.00 22.01 C
ATOM 14 N9 G B 4 5.054 -9.639 2.972 1.00 20.94 N
ATOM 15 C8 G B 4 3.868 -9.486 3.646 1.00 21.42 C
ATOM 16 N7 G B 4 2.819 -9.623 2.877 1.00 21.77 N
ATOM 17 C5 G B 4 3.344 -9.882 1.618 1.00 20.17 C
ATOM 18 C6 G B 4 2.691 -10.107 0.378 1.00 20.16 C
ATOM 19 O6 G B 4 1.470 -10.119 0.135 1.00 18.69 O
ATOM 20 N1 G B 4 3.608 -10.330 -0.649 1.00 20.30 N
ATOM 21 C2 G B 4 4.976 -10.331 -0.505 1.00 21.01 C
ATOM 22 N2 G B 4 5.695 -10.572 -1.618 1.00 18.08 N
ATOM 23 N3 G B 4 5.595 -10.113 0.645 1.00 20.19 N
ATOM 24 C4 G B 4 4.723 -9.900 1.658 1.00 21.88 C
ATOM 25 P U B 5 7.154 -4.888 3.089 1.00 22.92 P
ATOM 26 OP1 U B 5 8.204 -3.868 3.310 1.00 22.83 O
ATOM 27 OP2 U B 5 5.722 -4.507 3.216 1.00 20.80 O
ATOM 28 O5' U B 5 7.365 -5.492 1.628 1.00 21.93 O
TER
Atoms:
C4: (3.040,-7.440,-1.788)
N3: (3.786,-7.600,-2.920)
OP1: (8.204,-3.868,3.310)
OP2: (5.722,-4.507,3.216)
C2: (5.142,-7.501,-3.039)
C1': (7.286,-7.100,-1.943)
C3': (8.095,-5.025,-1.138)
O5': (7.365,-5.492,1.628)
O4': (7.838,-7.300,-0.652)
C5': (8.647,-5.938,1.201)
P: (7.154,-4.888,3.089)
C4': (8.660,-6.156,-0.296)
C2': (7.782,-5.743,-2.448)
O2': (8.934,-5.942,-3.246)
N1: (5.819,-7.206,-1.867)
O4: (1.826,-7.633,-1.842)
O2: (5.701,-7.663,-4.109)
C6: (5.136,-7.021,-0.692)
C5: (3.800,-7.123,-0.612)
O3': (9.060,-3.991,-1.307)
N3: (3.786,-7.600,-2.920)
OP1: (8.204,-3.868,3.310)
OP2: (5.722,-4.507,3.216)
C2: (5.142,-7.501,-3.039)
C1': (7.286,-7.100,-1.943)
C3': (8.095,-5.025,-1.138)
O5': (7.365,-5.492,1.628)
O4': (7.838,-7.300,-0.652)
C5': (8.647,-5.938,1.201)
P: (7.154,-4.888,3.089)
C4': (8.660,-6.156,-0.296)
C2': (7.782,-5.743,-2.448)
O2': (8.934,-5.942,-3.246)
N1: (5.819,-7.206,-1.867)
O4: (1.826,-7.633,-1.842)
O2: (5.701,-7.663,-4.109)
C6: (5.136,-7.021,-0.692)
C5: (3.800,-7.123,-0.612)
O3': (9.060,-3.991,-1.307)
OP1: (4.164,-6.285,8.478)
OP2: (2.362,-7.484,7.095)
C3': (6.660,-7.266,4.085)
C1': (6.408,-9.529,3.511)
C5': (6.152,-7.653,6.605)
O6: (1.470,-10.119,0.135)
O4': (6.338,-9.414,4.929)
C8: (3.868,-9.486,3.646)
C2: (4.976,-10.331,-0.505)
C6: (2.691,-10.107,0.378)
C5: (3.344,-9.882,1.618)
C4: (4.723,-9.900,1.658)
P: (3.747,-7.432,7.639)
C4': (6.847,-8.113,5.336)
C2': (7.078,-8.253,3.006)
O2': (8.482,-8.441,2.938)
N1: (3.608,-10.330,-0.649)
N2: (5.695,-10.572,-1.618)
N3: (5.595,-10.113,0.645)
N7: (2.819,-9.623,2.877)
N9: (5.054,-9.639,2.972)
O5': (4.749,-7.528,6.399)
O3': (7.490,-6.110,4.083)
OP2: (2.362,-7.484,7.095)
C3': (6.660,-7.266,4.085)
C1': (6.408,-9.529,3.511)
C5': (6.152,-7.653,6.605)
O6: (1.470,-10.119,0.135)
O4': (6.338,-9.414,4.929)
C8: (3.868,-9.486,3.646)
C2: (4.976,-10.331,-0.505)
C6: (2.691,-10.107,0.378)
C5: (3.344,-9.882,1.618)
C4: (4.723,-9.900,1.658)
P: (3.747,-7.432,7.639)
C4': (6.847,-8.113,5.336)
C2': (7.078,-8.253,3.006)
O2': (8.482,-8.441,2.938)
N1: (3.608,-10.330,-0.649)
N2: (5.695,-10.572,-1.618)
N3: (5.595,-10.113,0.645)
N7: (2.819,-9.623,2.877)
N9: (5.054,-9.639,2.972)
O5': (4.749,-7.528,6.399)
O3': (7.490,-6.110,4.083)
Image (generated by PyMOL):