Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R1D:D5:C5
Extra
PDB:
ATOM 1 O3' C A 4 6.855 7.060 30.890 1.00 26.22 O
ATOM 2 P G A 5 7.956 6.267 30.071 0.50 25.86 P
ATOM 3 OP1 G A 5 9.232 6.496 30.785 0.50 25.14 O
ATOM 4 OP2 G A 5 7.833 6.637 28.641 0.50 22.49 O
ATOM 5 O5' G A 5 7.551 4.735 30.273 0.50 23.91 O
ATOM 6 C5' G A 5 7.987 3.735 29.355 0.50 22.29 C
ATOM 7 C4' G A 5 7.725 2.369 29.954 0.50 20.74 C
ATOM 8 O4' G A 5 6.347 2.325 30.391 0.50 22.03 O
ATOM 9 C3' G A 5 7.859 1.182 29.010 0.50 21.71 C
ATOM 10 O3' G A 5 9.199 0.729 28.957 0.50 25.13 O
ATOM 11 C2' G A 5 6.959 0.173 29.700 0.50 21.13 C
ATOM 12 O2' G A 5 7.546 -0.348 30.876 0.50 22.24 O
ATOM 13 C1' G A 5 5.787 1.082 30.038 0.50 19.92 C
ATOM 14 N9 G A 5 4.898 1.218 28.888 0.50 19.57 N
ATOM 15 C8 G A 5 4.125 0.192 28.411 0.50 19.27 C
ATOM 16 N7 G A 5 3.406 0.511 27.379 0.50 15.34 N
ATOM 17 C5 G A 5 3.730 1.837 27.146 0.50 16.88 C
ATOM 18 C6 G A 5 3.250 2.694 26.138 0.50 18.02 C
ATOM 19 O6 G A 5 2.429 2.434 25.253 0.50 16.94 O
ATOM 20 N1 G A 5 3.809 3.959 26.230 0.50 16.93 N
ATOM 21 C2 G A 5 4.724 4.344 27.177 0.50 18.80 C
ATOM 22 N2 G A 5 5.135 5.615 27.085 0.50 19.74 N
ATOM 23 N3 G A 5 5.187 3.549 28.139 0.50 19.64 N
ATOM 24 C4 G A 5 4.654 2.303 28.060 0.50 15.52 C
ATOM 25 P G A 6 9.848 0.450 27.521 0.50 25.96 P
ATOM 26 OP1 G A 6 11.230 -0.032 27.718 0.50 26.12 O
ATOM 27 OP2 G A 6 9.573 1.613 26.650 0.50 27.43 O
ATOM 28 O5' G A 6 9.013 -0.790 26.971 0.50 23.69 O
TER
ATOM 1 O3' C B 4 -3.903 -3.584 17.561 1.00 24.91 O
ATOM 2 P G B 5 -4.630 -3.373 18.976 0.50 23.69 P
ATOM 3 OP1 G B 5 -5.756 -4.332 18.994 0.50 23.33 O
ATOM 4 OP2 G B 5 -4.873 -1.925 19.170 0.50 21.52 O
ATOM 5 O5' G B 5 -3.562 -3.854 20.065 0.50 22.29 O
ATOM 6 C5' G B 5 -3.645 -5.161 20.620 0.50 22.55 C
ATOM 7 C4' G B 5 -2.554 -5.376 21.651 0.50 19.40 C
ATOM 8 O4' G B 5 -1.329 -4.754 21.196 0.50 21.34 O
ATOM 9 C3' G B 5 -2.797 -4.737 23.015 0.50 19.08 C
ATOM 10 O3' G B 5 -3.628 -5.549 23.815 0.50 18.76 O
ATOM 11 C2' G B 5 -1.377 -4.705 23.557 0.50 20.06 C
ATOM 12 O2' G B 5 -0.894 -5.970 23.965 0.50 22.14 O
ATOM 13 C1' G B 5 -0.632 -4.240 22.317 0.50 21.93 C
ATOM 14 N9 G B 5 -0.586 -2.787 22.222 0.50 16.41 N
ATOM 15 C8 G B 5 -1.221 -1.983 21.308 0.50 19.23 C
ATOM 16 N7 G B 5 -0.975 -0.713 21.487 0.50 17.75 N
ATOM 17 C5 G B 5 -0.134 -0.677 22.591 0.50 17.32 C
ATOM 18 C6 G B 5 0.466 0.419 23.254 0.50 17.17 C
ATOM 19 O6 G B 5 0.366 1.620 22.996 0.50 17.25 O
ATOM 20 N1 G B 5 1.251 0.013 24.330 0.50 16.57 N
ATOM 21 C2 G B 5 1.432 -1.294 24.712 0.50 17.71 C
ATOM 22 N2 G B 5 2.220 -1.504 25.773 0.50 15.19 N
ATOM 23 N3 G B 5 0.874 -2.329 24.101 0.50 18.99 N
ATOM 24 C4 G B 5 0.113 -1.945 23.055 0.50 18.92 C
ATOM 25 P G B 6 -4.316 -4.982 25.147 1.00 21.24 P
ATOM 26 OP1 G B 6 -5.214 -6.053 25.629 1.00 25.25 O
ATOM 27 OP2 G B 6 -4.905 -3.654 24.864 1.00 21.88 O
ATOM 28 O5' G B 6 -3.114 -4.800 26.178 1.00 19.87 O
TER
ATOM 2 P G A 5 7.956 6.267 30.071 0.50 25.86 P
ATOM 3 OP1 G A 5 9.232 6.496 30.785 0.50 25.14 O
ATOM 4 OP2 G A 5 7.833 6.637 28.641 0.50 22.49 O
ATOM 5 O5' G A 5 7.551 4.735 30.273 0.50 23.91 O
ATOM 6 C5' G A 5 7.987 3.735 29.355 0.50 22.29 C
ATOM 7 C4' G A 5 7.725 2.369 29.954 0.50 20.74 C
ATOM 8 O4' G A 5 6.347 2.325 30.391 0.50 22.03 O
ATOM 9 C3' G A 5 7.859 1.182 29.010 0.50 21.71 C
ATOM 10 O3' G A 5 9.199 0.729 28.957 0.50 25.13 O
ATOM 11 C2' G A 5 6.959 0.173 29.700 0.50 21.13 C
ATOM 12 O2' G A 5 7.546 -0.348 30.876 0.50 22.24 O
ATOM 13 C1' G A 5 5.787 1.082 30.038 0.50 19.92 C
ATOM 14 N9 G A 5 4.898 1.218 28.888 0.50 19.57 N
ATOM 15 C8 G A 5 4.125 0.192 28.411 0.50 19.27 C
ATOM 16 N7 G A 5 3.406 0.511 27.379 0.50 15.34 N
ATOM 17 C5 G A 5 3.730 1.837 27.146 0.50 16.88 C
ATOM 18 C6 G A 5 3.250 2.694 26.138 0.50 18.02 C
ATOM 19 O6 G A 5 2.429 2.434 25.253 0.50 16.94 O
ATOM 20 N1 G A 5 3.809 3.959 26.230 0.50 16.93 N
ATOM 21 C2 G A 5 4.724 4.344 27.177 0.50 18.80 C
ATOM 22 N2 G A 5 5.135 5.615 27.085 0.50 19.74 N
ATOM 23 N3 G A 5 5.187 3.549 28.139 0.50 19.64 N
ATOM 24 C4 G A 5 4.654 2.303 28.060 0.50 15.52 C
ATOM 25 P G A 6 9.848 0.450 27.521 0.50 25.96 P
ATOM 26 OP1 G A 6 11.230 -0.032 27.718 0.50 26.12 O
ATOM 27 OP2 G A 6 9.573 1.613 26.650 0.50 27.43 O
ATOM 28 O5' G A 6 9.013 -0.790 26.971 0.50 23.69 O
TER
ATOM 1 O3' C B 4 -3.903 -3.584 17.561 1.00 24.91 O
ATOM 2 P G B 5 -4.630 -3.373 18.976 0.50 23.69 P
ATOM 3 OP1 G B 5 -5.756 -4.332 18.994 0.50 23.33 O
ATOM 4 OP2 G B 5 -4.873 -1.925 19.170 0.50 21.52 O
ATOM 5 O5' G B 5 -3.562 -3.854 20.065 0.50 22.29 O
ATOM 6 C5' G B 5 -3.645 -5.161 20.620 0.50 22.55 C
ATOM 7 C4' G B 5 -2.554 -5.376 21.651 0.50 19.40 C
ATOM 8 O4' G B 5 -1.329 -4.754 21.196 0.50 21.34 O
ATOM 9 C3' G B 5 -2.797 -4.737 23.015 0.50 19.08 C
ATOM 10 O3' G B 5 -3.628 -5.549 23.815 0.50 18.76 O
ATOM 11 C2' G B 5 -1.377 -4.705 23.557 0.50 20.06 C
ATOM 12 O2' G B 5 -0.894 -5.970 23.965 0.50 22.14 O
ATOM 13 C1' G B 5 -0.632 -4.240 22.317 0.50 21.93 C
ATOM 14 N9 G B 5 -0.586 -2.787 22.222 0.50 16.41 N
ATOM 15 C8 G B 5 -1.221 -1.983 21.308 0.50 19.23 C
ATOM 16 N7 G B 5 -0.975 -0.713 21.487 0.50 17.75 N
ATOM 17 C5 G B 5 -0.134 -0.677 22.591 0.50 17.32 C
ATOM 18 C6 G B 5 0.466 0.419 23.254 0.50 17.17 C
ATOM 19 O6 G B 5 0.366 1.620 22.996 0.50 17.25 O
ATOM 20 N1 G B 5 1.251 0.013 24.330 0.50 16.57 N
ATOM 21 C2 G B 5 1.432 -1.294 24.712 0.50 17.71 C
ATOM 22 N2 G B 5 2.220 -1.504 25.773 0.50 15.19 N
ATOM 23 N3 G B 5 0.874 -2.329 24.101 0.50 18.99 N
ATOM 24 C4 G B 5 0.113 -1.945 23.055 0.50 18.92 C
ATOM 25 P G B 6 -4.316 -4.982 25.147 1.00 21.24 P
ATOM 26 OP1 G B 6 -5.214 -6.053 25.629 1.00 25.25 O
ATOM 27 OP2 G B 6 -4.905 -3.654 24.864 1.00 21.88 O
ATOM 28 O5' G B 6 -3.114 -4.800 26.178 1.00 19.87 O
TER
Atoms:
OP1: (9.232,6.496,30.785)
OP2: (7.833,6.637,28.641)
C3': (7.859,1.182,29.010)
C1': (5.787,1.082,30.038)
C5': (7.987,3.735,29.355)
O6: (2.429,2.434,25.253)
O4': (6.347,2.325,30.391)
C8: (4.125,0.192,28.411)
C2: (4.724,4.344,27.177)
C6: (3.250,2.694,26.138)
C5: (3.730,1.837,27.146)
C4: (4.654,2.303,28.060)
P: (7.956,6.267,30.071)
C4': (7.725,2.369,29.954)
C2': (6.959,0.173,29.700)
O2': (7.546,-0.348,30.876)
N1: (3.809,3.959,26.230)
N2: (5.135,5.615,27.085)
N3: (5.187,3.549,28.139)
N7: (3.406,0.511,27.379)
N9: (4.898,1.218,28.888)
O5': (7.551,4.735,30.273)
O3': (9.199,0.729,28.957)
OP2: (7.833,6.637,28.641)
C3': (7.859,1.182,29.010)
C1': (5.787,1.082,30.038)
C5': (7.987,3.735,29.355)
O6: (2.429,2.434,25.253)
O4': (6.347,2.325,30.391)
C8: (4.125,0.192,28.411)
C2: (4.724,4.344,27.177)
C6: (3.250,2.694,26.138)
C5: (3.730,1.837,27.146)
C4: (4.654,2.303,28.060)
P: (7.956,6.267,30.071)
C4': (7.725,2.369,29.954)
C2': (6.959,0.173,29.700)
O2': (7.546,-0.348,30.876)
N1: (3.809,3.959,26.230)
N2: (5.135,5.615,27.085)
N3: (5.187,3.549,28.139)
N7: (3.406,0.511,27.379)
N9: (4.898,1.218,28.888)
O5': (7.551,4.735,30.273)
O3': (9.199,0.729,28.957)
OP1: (-5.756,-4.332,18.994)
OP2: (-4.873,-1.925,19.170)
C3': (-2.797,-4.737,23.015)
C1': (-0.632,-4.240,22.317)
C5': (-3.645,-5.161,20.620)
O6: (0.366,1.620,22.996)
O4': (-1.329,-4.754,21.196)
C8: (-1.221,-1.983,21.308)
C2: (1.432,-1.294,24.712)
C6: (0.466,0.419,23.254)
C5: (-0.134,-0.677,22.591)
C4: (0.113,-1.945,23.055)
P: (-4.630,-3.373,18.976)
C4': (-2.554,-5.376,21.651)
C2': (-1.377,-4.705,23.557)
O2': (-0.894,-5.970,23.965)
N1: (1.251,0.013,24.330)
N2: (2.220,-1.504,25.773)
N3: (0.874,-2.329,24.101)
N7: (-0.975,-0.713,21.487)
N9: (-0.586,-2.787,22.222)
O5': (-3.562,-3.854,20.065)
O3': (-3.628,-5.549,23.815)
OP2: (-4.873,-1.925,19.170)
C3': (-2.797,-4.737,23.015)
C1': (-0.632,-4.240,22.317)
C5': (-3.645,-5.161,20.620)
O6: (0.366,1.620,22.996)
O4': (-1.329,-4.754,21.196)
C8: (-1.221,-1.983,21.308)
C2: (1.432,-1.294,24.712)
C6: (0.466,0.419,23.254)
C5: (-0.134,-0.677,22.591)
C4: (0.113,-1.945,23.055)
P: (-4.630,-3.373,18.976)
C4': (-2.554,-5.376,21.651)
C2': (-1.377,-4.705,23.557)
O2': (-0.894,-5.970,23.965)
N1: (1.251,0.013,24.330)
N2: (2.220,-1.504,25.773)
N3: (0.874,-2.329,24.101)
N7: (-0.975,-0.713,21.487)
N9: (-0.586,-2.787,22.222)
O5': (-3.562,-3.854,20.065)
O3': (-3.628,-5.549,23.815)
Image (generated by PyMOL):