Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X51:X53
Extra
PDB:
ATOM 1 O3' G A 50 -33.981 -12.224 9.980 1.00 36.31 O
ATOM 2 P A A 51 -33.450 -11.844 11.439 1.00 38.01 P
ATOM 3 OP1 A A 51 -33.906 -12.913 12.354 1.00 37.79 O
ATOM 4 OP2 A A 51 -33.821 -10.438 11.707 1.00 38.84 O
ATOM 5 O5' A A 51 -31.859 -11.906 11.324 1.00 36.91 O
ATOM 6 C5' A A 51 -31.069 -11.686 12.488 1.00 35.95 C
ATOM 7 C4' A A 51 -29.588 -11.770 12.167 1.00 34.88 C
ATOM 8 O4' A A 51 -29.287 -13.041 11.536 1.00 34.46 O
ATOM 9 C3' A A 51 -29.077 -10.702 11.209 1.00 35.03 C
ATOM 10 O3' A A 51 -27.718 -10.413 11.497 1.00 35.79 O
ATOM 11 C2' A A 51 -29.196 -11.389 9.853 1.00 34.15 C
ATOM 12 O2' A A 51 -28.280 -10.869 8.906 1.00 33.56 O
ATOM 13 C1' A A 51 -28.849 -12.833 10.204 1.00 33.34 C
ATOM 14 N9 A A 51 -29.530 -13.793 9.340 1.00 33.02 N
ATOM 15 C8 A A 51 -30.765 -14.340 9.546 1.00 32.65 C
ATOM 16 N7 A A 51 -31.146 -15.163 8.601 1.00 32.42 N
ATOM 17 C5 A A 51 -30.089 -15.155 7.709 1.00 32.51 C
ATOM 18 C6 A A 51 -29.877 -15.830 6.491 1.00 31.38 C
ATOM 19 N6 A A 51 -30.765 -16.671 5.952 1.00 30.97 N
ATOM 20 N1 A A 51 -28.715 -15.603 5.849 1.00 31.80 N
ATOM 21 C2 A A 51 -27.828 -14.755 6.390 1.00 31.78 C
ATOM 22 N3 A A 51 -27.914 -14.067 7.528 1.00 32.01 N
ATOM 23 C4 A A 51 -29.083 -14.310 8.144 1.00 32.70 C
ATOM 24 P U A 52 -27.327 -9.439 12.704 1.00 36.42 P
ATOM 25 OP1 U A 52 -28.532 -8.675 13.098 1.00 35.89 O
ATOM 26 OP2 U A 52 -26.084 -8.736 12.315 1.00 35.58 O
ATOM 27 O5' U A 52 -26.965 -10.465 13.876 1.00 36.78 O
TER
ATOM 1 O3' U B 52 -26.993 -14.539 15.570 1.00 36.40 O
ATOM 2 P C B 53 -26.885 -15.858 14.677 1.00 35.76 P
ATOM 3 OP1 C B 53 -27.019 -17.014 15.594 1.00 36.97 O
ATOM 4 OP2 C B 53 -25.700 -15.744 13.802 1.00 36.23 O
ATOM 5 O5' C B 53 -28.192 -15.767 13.761 1.00 35.93 O
ATOM 6 C5' C B 53 -29.481 -15.939 14.357 1.00 34.57 C
ATOM 7 C4' C B 53 -30.323 -16.897 13.538 1.00 34.36 C
ATOM 8 O4' C B 53 -30.389 -16.422 12.170 1.00 33.77 O
ATOM 9 C3' C B 53 -29.759 -18.304 13.399 1.00 34.34 C
ATOM 10 O3' C B 53 -30.070 -19.104 14.536 1.00 35.38 O
ATOM 11 C2' C B 53 -30.498 -18.788 12.157 1.00 33.89 C
ATOM 12 O2' C B 53 -31.825 -19.190 12.433 1.00 33.31 O
ATOM 13 C1' C B 53 -30.501 -17.531 11.296 1.00 32.59 C
ATOM 14 N1 C B 53 -29.384 -17.511 10.319 1.00 32.36 N
ATOM 15 C2 C B 53 -29.470 -18.322 9.181 1.00 31.87 C
ATOM 16 O2 C B 53 -30.471 -19.033 9.018 1.00 31.29 O
ATOM 17 N3 C B 53 -28.448 -18.308 8.294 1.00 30.93 N
ATOM 18 C4 C B 53 -27.383 -17.534 8.510 1.00 31.26 C
ATOM 19 N4 C B 53 -26.403 -17.557 7.601 1.00 30.62 N
ATOM 20 C5 C B 53 -27.275 -16.704 9.666 1.00 30.88 C
ATOM 21 C6 C B 53 -28.288 -16.725 10.539 1.00 31.06 C
ATOM 22 P U B 54 -29.068 -20.275 14.968 1.00 36.34 P
ATOM 23 OP1 U B 54 -29.537 -20.817 16.262 1.00 37.00 O
ATOM 24 OP2 U B 54 -27.682 -19.775 14.829 1.00 36.35 O
ATOM 25 O5' U B 54 -29.275 -21.380 13.828 1.00 36.22 O
TER
ATOM 2 P A A 51 -33.450 -11.844 11.439 1.00 38.01 P
ATOM 3 OP1 A A 51 -33.906 -12.913 12.354 1.00 37.79 O
ATOM 4 OP2 A A 51 -33.821 -10.438 11.707 1.00 38.84 O
ATOM 5 O5' A A 51 -31.859 -11.906 11.324 1.00 36.91 O
ATOM 6 C5' A A 51 -31.069 -11.686 12.488 1.00 35.95 C
ATOM 7 C4' A A 51 -29.588 -11.770 12.167 1.00 34.88 C
ATOM 8 O4' A A 51 -29.287 -13.041 11.536 1.00 34.46 O
ATOM 9 C3' A A 51 -29.077 -10.702 11.209 1.00 35.03 C
ATOM 10 O3' A A 51 -27.718 -10.413 11.497 1.00 35.79 O
ATOM 11 C2' A A 51 -29.196 -11.389 9.853 1.00 34.15 C
ATOM 12 O2' A A 51 -28.280 -10.869 8.906 1.00 33.56 O
ATOM 13 C1' A A 51 -28.849 -12.833 10.204 1.00 33.34 C
ATOM 14 N9 A A 51 -29.530 -13.793 9.340 1.00 33.02 N
ATOM 15 C8 A A 51 -30.765 -14.340 9.546 1.00 32.65 C
ATOM 16 N7 A A 51 -31.146 -15.163 8.601 1.00 32.42 N
ATOM 17 C5 A A 51 -30.089 -15.155 7.709 1.00 32.51 C
ATOM 18 C6 A A 51 -29.877 -15.830 6.491 1.00 31.38 C
ATOM 19 N6 A A 51 -30.765 -16.671 5.952 1.00 30.97 N
ATOM 20 N1 A A 51 -28.715 -15.603 5.849 1.00 31.80 N
ATOM 21 C2 A A 51 -27.828 -14.755 6.390 1.00 31.78 C
ATOM 22 N3 A A 51 -27.914 -14.067 7.528 1.00 32.01 N
ATOM 23 C4 A A 51 -29.083 -14.310 8.144 1.00 32.70 C
ATOM 24 P U A 52 -27.327 -9.439 12.704 1.00 36.42 P
ATOM 25 OP1 U A 52 -28.532 -8.675 13.098 1.00 35.89 O
ATOM 26 OP2 U A 52 -26.084 -8.736 12.315 1.00 35.58 O
ATOM 27 O5' U A 52 -26.965 -10.465 13.876 1.00 36.78 O
TER
ATOM 1 O3' U B 52 -26.993 -14.539 15.570 1.00 36.40 O
ATOM 2 P C B 53 -26.885 -15.858 14.677 1.00 35.76 P
ATOM 3 OP1 C B 53 -27.019 -17.014 15.594 1.00 36.97 O
ATOM 4 OP2 C B 53 -25.700 -15.744 13.802 1.00 36.23 O
ATOM 5 O5' C B 53 -28.192 -15.767 13.761 1.00 35.93 O
ATOM 6 C5' C B 53 -29.481 -15.939 14.357 1.00 34.57 C
ATOM 7 C4' C B 53 -30.323 -16.897 13.538 1.00 34.36 C
ATOM 8 O4' C B 53 -30.389 -16.422 12.170 1.00 33.77 O
ATOM 9 C3' C B 53 -29.759 -18.304 13.399 1.00 34.34 C
ATOM 10 O3' C B 53 -30.070 -19.104 14.536 1.00 35.38 O
ATOM 11 C2' C B 53 -30.498 -18.788 12.157 1.00 33.89 C
ATOM 12 O2' C B 53 -31.825 -19.190 12.433 1.00 33.31 O
ATOM 13 C1' C B 53 -30.501 -17.531 11.296 1.00 32.59 C
ATOM 14 N1 C B 53 -29.384 -17.511 10.319 1.00 32.36 N
ATOM 15 C2 C B 53 -29.470 -18.322 9.181 1.00 31.87 C
ATOM 16 O2 C B 53 -30.471 -19.033 9.018 1.00 31.29 O
ATOM 17 N3 C B 53 -28.448 -18.308 8.294 1.00 30.93 N
ATOM 18 C4 C B 53 -27.383 -17.534 8.510 1.00 31.26 C
ATOM 19 N4 C B 53 -26.403 -17.557 7.601 1.00 30.62 N
ATOM 20 C5 C B 53 -27.275 -16.704 9.666 1.00 30.88 C
ATOM 21 C6 C B 53 -28.288 -16.725 10.539 1.00 31.06 C
ATOM 22 P U B 54 -29.068 -20.275 14.968 1.00 36.34 P
ATOM 23 OP1 U B 54 -29.537 -20.817 16.262 1.00 37.00 O
ATOM 24 OP2 U B 54 -27.682 -19.775 14.829 1.00 36.35 O
ATOM 25 O5' U B 54 -29.275 -21.380 13.828 1.00 36.22 O
TER
Atoms:
OP1: (-33.906,-12.913,12.354)
OP2: (-33.821,-10.438,11.707)
C3': (-29.077,-10.702,11.209)
C1': (-28.849,-12.833,10.204)
C5': (-31.069,-11.686,12.488)
O4': (-29.287,-13.041,11.536)
C8: (-30.765,-14.340,9.546)
O2': (-28.280,-10.869,8.906)
C6: (-29.877,-15.830,6.491)
C5: (-30.089,-15.155,7.709)
C4: (-29.083,-14.310,8.144)
P: (-33.450,-11.844,11.439)
C4': (-29.588,-11.770,12.167)
C2': (-29.196,-11.389,9.853)
C2: (-27.828,-14.755,6.390)
N1: (-28.715,-15.603,5.849)
N3: (-27.914,-14.067,7.528)
N6: (-30.765,-16.671,5.952)
N7: (-31.146,-15.163,8.601)
N9: (-29.530,-13.793,9.340)
O5': (-31.859,-11.906,11.324)
O3': (-27.718,-10.413,11.497)
OP2: (-33.821,-10.438,11.707)
C3': (-29.077,-10.702,11.209)
C1': (-28.849,-12.833,10.204)
C5': (-31.069,-11.686,12.488)
O4': (-29.287,-13.041,11.536)
C8: (-30.765,-14.340,9.546)
O2': (-28.280,-10.869,8.906)
C6: (-29.877,-15.830,6.491)
C5: (-30.089,-15.155,7.709)
C4: (-29.083,-14.310,8.144)
P: (-33.450,-11.844,11.439)
C4': (-29.588,-11.770,12.167)
C2': (-29.196,-11.389,9.853)
C2: (-27.828,-14.755,6.390)
N1: (-28.715,-15.603,5.849)
N3: (-27.914,-14.067,7.528)
N6: (-30.765,-16.671,5.952)
N7: (-31.146,-15.163,8.601)
N9: (-29.530,-13.793,9.340)
O5': (-31.859,-11.906,11.324)
O3': (-27.718,-10.413,11.497)
C2: (-29.470,-18.322,9.181)
OP1: (-27.019,-17.014,15.594)
OP2: (-25.700,-15.744,13.802)
C4: (-27.383,-17.534,8.510)
O5': (-28.192,-15.767,13.761)
C3': (-29.759,-18.304,13.399)
C1': (-30.501,-17.531,11.296)
O4': (-30.389,-16.422,12.170)
C5': (-29.481,-15.939,14.357)
P: (-26.885,-15.858,14.677)
O2: (-30.471,-19.033,9.018)
C4': (-30.323,-16.897,13.538)
C2': (-30.498,-18.788,12.157)
O2': (-31.825,-19.190,12.433)
N1: (-29.384,-17.511,10.319)
N3: (-28.448,-18.308,8.294)
N4: (-26.403,-17.557,7.601)
C6: (-28.288,-16.725,10.539)
C5: (-27.275,-16.704,9.666)
O3': (-30.070,-19.104,14.536)
OP1: (-27.019,-17.014,15.594)
OP2: (-25.700,-15.744,13.802)
C4: (-27.383,-17.534,8.510)
O5': (-28.192,-15.767,13.761)
C3': (-29.759,-18.304,13.399)
C1': (-30.501,-17.531,11.296)
O4': (-30.389,-16.422,12.170)
C5': (-29.481,-15.939,14.357)
P: (-26.885,-15.858,14.677)
O2: (-30.471,-19.033,9.018)
C4': (-30.323,-16.897,13.538)
C2': (-30.498,-18.788,12.157)
O2': (-31.825,-19.190,12.433)
N1: (-29.384,-17.511,10.319)
N3: (-28.448,-18.308,8.294)
N4: (-26.403,-17.557,7.601)
C6: (-28.288,-16.725,10.539)
C5: (-27.275,-16.704,9.666)
O3': (-30.070,-19.104,14.536)
Image (generated by PyMOL):