Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDJ:S2:S6
Extra
PDB:
ATOM 1 O3' G A 1 -10.997 103.145 -4.923 0.60 66.15 O
ATOM 2 P A A 2 -11.279 104.598 -4.267 0.60 63.76 P
ATOM 3 OP1 A A 2 -12.291 105.340 -5.039 0.60 61.12 O
ATOM 4 OP2 A A 2 -9.932 105.237 -4.054 0.60 63.58 O
ATOM 5 O5' A A 2 -11.853 104.296 -2.810 0.60 63.79 O
ATOM 6 C5' A A 2 -12.829 103.253 -2.605 0.60 63.51 C
ATOM 7 C4' A A 2 -12.985 102.970 -1.130 0.60 62.33 C
ATOM 8 O4' A A 2 -11.772 102.361 -0.600 0.60 60.99 O
ATOM 9 C3' A A 2 -13.192 104.214 -0.280 0.60 62.47 C
ATOM 10 O3' A A 2 -14.556 104.564 -0.268 0.60 62.76 O
ATOM 11 C2' A A 2 -12.658 103.815 1.101 0.60 61.17 C
ATOM 12 O2' A A 2 -13.624 103.199 1.949 0.60 60.06 O
ATOM 13 C1' A A 2 -11.549 102.818 0.730 0.60 59.80 C
ATOM 14 N9 A A 2 -10.219 103.427 0.797 0.60 56.99 N
ATOM 15 C8 A A 2 -9.402 103.869 -0.225 0.60 56.58 C
ATOM 16 N7 A A 2 -8.270 104.400 0.193 0.60 56.05 N
ATOM 17 C5 A A 2 -8.349 104.293 1.579 0.60 54.63 C
ATOM 18 C6 A A 2 -7.473 104.676 2.618 0.60 52.75 C
ATOM 19 N6 A A 2 -6.299 105.290 2.423 0.60 52.11 N
ATOM 20 N1 A A 2 -7.857 104.417 3.886 0.60 52.81 N
ATOM 21 C2 A A 2 -9.039 103.821 4.097 0.60 53.02 C
ATOM 22 N3 A A 2 -9.948 103.422 3.214 0.60 53.62 N
ATOM 23 C4 A A 2 -9.538 103.690 1.961 0.60 55.54 C
ATOM 24 P U A 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 25 OP1 U A 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 26 OP2 U A 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 27 O5' U A 3 -15.027 106.272 1.492 0.60 65.41 O
TER
ATOM 1 O3' A B 5 -5.836 103.481 11.793 0.60 71.14 O
ATOM 2 P C B 6 -6.630 102.269 12.466 0.60 78.38 P
ATOM 3 OP1 C B 6 -7.423 102.796 13.615 0.60 78.21 O
ATOM 4 OP2 C B 6 -5.612 101.204 12.733 0.60 79.70 O
ATOM 5 O5' C B 6 -7.610 101.769 11.305 0.60 79.94 O
ATOM 6 C5' C B 6 -7.049 101.147 10.120 0.60 81.89 C
ATOM 7 C4' C B 6 -8.111 100.469 9.303 0.60 83.95 C
ATOM 8 O4' C B 6 -8.614 101.398 8.303 0.60 83.40 O
ATOM 9 C3' C B 6 -7.537 99.310 8.499 0.60 86.46 C
ATOM 10 O3' C B 6 -7.551 98.091 9.213 0.60 91.20 O
ATOM 11 C2' C B 6 -8.393 99.248 7.233 0.60 83.91 C
ATOM 12 O2' C B 6 -9.586 98.457 7.389 0.60 83.22 O
ATOM 13 C1' C B 6 -8.711 100.741 7.022 0.60 81.32 C
ATOM 14 N1 C B 6 -7.671 101.324 6.145 0.60 76.46 N
ATOM 15 C2 C B 6 -7.665 101.020 4.764 0.60 74.19 C
ATOM 16 O2 C B 6 -8.567 100.326 4.307 0.60 73.94 O
ATOM 17 N3 C B 6 -6.674 101.499 3.994 0.60 71.14 N
ATOM 18 C4 C B 6 -5.700 102.263 4.531 0.60 71.18 C
ATOM 19 N4 C B 6 -4.721 102.671 3.748 0.60 70.37 N
ATOM 20 C5 C B 6 -5.709 102.615 5.926 0.60 71.17 C
ATOM 21 C6 C B 6 -6.694 102.131 6.685 0.60 73.69 C
ATOM 22 P C B 7 -6.479 96.956 8.826 0.60 97.19 P
ATOM 23 OP1 C B 7 -6.632 95.833 9.800 0.60 96.57 O
ATOM 24 OP2 C B 7 -5.114 97.637 8.719 0.60 96.23 O
ATOM 25 O5' C B 7 -6.863 96.498 7.337 0.60 96.56 O
TER
ATOM 2 P A A 2 -11.279 104.598 -4.267 0.60 63.76 P
ATOM 3 OP1 A A 2 -12.291 105.340 -5.039 0.60 61.12 O
ATOM 4 OP2 A A 2 -9.932 105.237 -4.054 0.60 63.58 O
ATOM 5 O5' A A 2 -11.853 104.296 -2.810 0.60 63.79 O
ATOM 6 C5' A A 2 -12.829 103.253 -2.605 0.60 63.51 C
ATOM 7 C4' A A 2 -12.985 102.970 -1.130 0.60 62.33 C
ATOM 8 O4' A A 2 -11.772 102.361 -0.600 0.60 60.99 O
ATOM 9 C3' A A 2 -13.192 104.214 -0.280 0.60 62.47 C
ATOM 10 O3' A A 2 -14.556 104.564 -0.268 0.60 62.76 O
ATOM 11 C2' A A 2 -12.658 103.815 1.101 0.60 61.17 C
ATOM 12 O2' A A 2 -13.624 103.199 1.949 0.60 60.06 O
ATOM 13 C1' A A 2 -11.549 102.818 0.730 0.60 59.80 C
ATOM 14 N9 A A 2 -10.219 103.427 0.797 0.60 56.99 N
ATOM 15 C8 A A 2 -9.402 103.869 -0.225 0.60 56.58 C
ATOM 16 N7 A A 2 -8.270 104.400 0.193 0.60 56.05 N
ATOM 17 C5 A A 2 -8.349 104.293 1.579 0.60 54.63 C
ATOM 18 C6 A A 2 -7.473 104.676 2.618 0.60 52.75 C
ATOM 19 N6 A A 2 -6.299 105.290 2.423 0.60 52.11 N
ATOM 20 N1 A A 2 -7.857 104.417 3.886 0.60 52.81 N
ATOM 21 C2 A A 2 -9.039 103.821 4.097 0.60 53.02 C
ATOM 22 N3 A A 2 -9.948 103.422 3.214 0.60 53.62 N
ATOM 23 C4 A A 2 -9.538 103.690 1.961 0.60 55.54 C
ATOM 24 P U A 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 25 OP1 U A 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 26 OP2 U A 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 27 O5' U A 3 -15.027 106.272 1.492 0.60 65.41 O
TER
ATOM 1 O3' A B 5 -5.836 103.481 11.793 0.60 71.14 O
ATOM 2 P C B 6 -6.630 102.269 12.466 0.60 78.38 P
ATOM 3 OP1 C B 6 -7.423 102.796 13.615 0.60 78.21 O
ATOM 4 OP2 C B 6 -5.612 101.204 12.733 0.60 79.70 O
ATOM 5 O5' C B 6 -7.610 101.769 11.305 0.60 79.94 O
ATOM 6 C5' C B 6 -7.049 101.147 10.120 0.60 81.89 C
ATOM 7 C4' C B 6 -8.111 100.469 9.303 0.60 83.95 C
ATOM 8 O4' C B 6 -8.614 101.398 8.303 0.60 83.40 O
ATOM 9 C3' C B 6 -7.537 99.310 8.499 0.60 86.46 C
ATOM 10 O3' C B 6 -7.551 98.091 9.213 0.60 91.20 O
ATOM 11 C2' C B 6 -8.393 99.248 7.233 0.60 83.91 C
ATOM 12 O2' C B 6 -9.586 98.457 7.389 0.60 83.22 O
ATOM 13 C1' C B 6 -8.711 100.741 7.022 0.60 81.32 C
ATOM 14 N1 C B 6 -7.671 101.324 6.145 0.60 76.46 N
ATOM 15 C2 C B 6 -7.665 101.020 4.764 0.60 74.19 C
ATOM 16 O2 C B 6 -8.567 100.326 4.307 0.60 73.94 O
ATOM 17 N3 C B 6 -6.674 101.499 3.994 0.60 71.14 N
ATOM 18 C4 C B 6 -5.700 102.263 4.531 0.60 71.18 C
ATOM 19 N4 C B 6 -4.721 102.671 3.748 0.60 70.37 N
ATOM 20 C5 C B 6 -5.709 102.615 5.926 0.60 71.17 C
ATOM 21 C6 C B 6 -6.694 102.131 6.685 0.60 73.69 C
ATOM 22 P C B 7 -6.479 96.956 8.826 0.60 97.19 P
ATOM 23 OP1 C B 7 -6.632 95.833 9.800 0.60 96.57 O
ATOM 24 OP2 C B 7 -5.114 97.637 8.719 0.60 96.23 O
ATOM 25 O5' C B 7 -6.863 96.498 7.337 0.60 96.56 O
TER
Atoms:
OP1: (-12.291,105.340,-5.039)
OP2: (-9.932,105.237,-4.054)
C3': (-13.192,104.214,-0.280)
C1': (-11.549,102.818,0.730)
C5': (-12.829,103.253,-2.605)
O4': (-11.772,102.361,-0.600)
C8: (-9.402,103.869,-0.225)
O2': (-13.624,103.199,1.949)
C6: (-7.473,104.676,2.618)
C5: (-8.349,104.293,1.579)
C4: (-9.538,103.690,1.961)
P: (-11.279,104.598,-4.267)
C4': (-12.985,102.970,-1.130)
C2': (-12.658,103.815,1.101)
C2: (-9.039,103.821,4.097)
N1: (-7.857,104.417,3.886)
N3: (-9.948,103.422,3.214)
N6: (-6.299,105.290,2.423)
N7: (-8.270,104.400,0.193)
N9: (-10.219,103.427,0.797)
O5': (-11.853,104.296,-2.810)
O3': (-14.556,104.564,-0.268)
OP2: (-9.932,105.237,-4.054)
C3': (-13.192,104.214,-0.280)
C1': (-11.549,102.818,0.730)
C5': (-12.829,103.253,-2.605)
O4': (-11.772,102.361,-0.600)
C8: (-9.402,103.869,-0.225)
O2': (-13.624,103.199,1.949)
C6: (-7.473,104.676,2.618)
C5: (-8.349,104.293,1.579)
C4: (-9.538,103.690,1.961)
P: (-11.279,104.598,-4.267)
C4': (-12.985,102.970,-1.130)
C2': (-12.658,103.815,1.101)
C2: (-9.039,103.821,4.097)
N1: (-7.857,104.417,3.886)
N3: (-9.948,103.422,3.214)
N6: (-6.299,105.290,2.423)
N7: (-8.270,104.400,0.193)
N9: (-10.219,103.427,0.797)
O5': (-11.853,104.296,-2.810)
O3': (-14.556,104.564,-0.268)
C2: (-7.665,101.020,4.764)
OP1: (-7.423,102.796,13.615)
OP2: (-5.612,101.204,12.733)
C4: (-5.700,102.263,4.531)
O5': (-7.610,101.769,11.305)
C3': (-7.537,99.310,8.499)
C1': (-8.711,100.741,7.022)
O4': (-8.614,101.398,8.303)
C5': (-7.049,101.147,10.120)
P: (-6.630,102.269,12.466)
O2: (-8.567,100.326,4.307)
C4': (-8.111,100.469,9.303)
C2': (-8.393,99.248,7.233)
O2': (-9.586,98.457,7.389)
N1: (-7.671,101.324,6.145)
N3: (-6.674,101.499,3.994)
N4: (-4.721,102.671,3.748)
C6: (-6.694,102.131,6.685)
C5: (-5.709,102.615,5.926)
O3': (-7.551,98.091,9.213)
OP1: (-7.423,102.796,13.615)
OP2: (-5.612,101.204,12.733)
C4: (-5.700,102.263,4.531)
O5': (-7.610,101.769,11.305)
C3': (-7.537,99.310,8.499)
C1': (-8.711,100.741,7.022)
O4': (-8.614,101.398,8.303)
C5': (-7.049,101.147,10.120)
P: (-6.630,102.269,12.466)
O2: (-8.567,100.326,4.307)
C4': (-8.111,100.469,9.303)
C2': (-8.393,99.248,7.233)
O2': (-9.586,98.457,7.389)
N1: (-7.671,101.324,6.145)
N3: (-6.674,101.499,3.994)
N4: (-4.721,102.671,3.748)
C6: (-6.694,102.131,6.685)
C5: (-5.709,102.615,5.926)
O3': (-7.551,98.091,9.213)
Image (generated by PyMOL):