Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y51:Y53
Extra
PDB:
ATOM 1 O3' G A 50 1.244 8.113 67.774 1.00 39.32 O
ATOM 2 P A A 51 0.103 8.025 66.652 1.00 40.31 P
ATOM 3 OP1 A A 51 -0.565 9.346 66.589 1.00 40.43 O
ATOM 4 OP2 A A 51 -0.689 6.808 66.941 1.00 40.76 O
ATOM 5 O5' A A 51 0.884 7.782 65.278 1.00 40.81 O
ATOM 6 C5' A A 51 0.155 7.406 64.107 1.00 41.41 C
ATOM 7 C4' A A 51 0.852 7.851 62.830 1.00 41.87 C
ATOM 8 O4' A A 51 1.234 9.248 62.935 1.00 42.16 O
ATOM 9 C3' A A 51 2.136 7.104 62.491 1.00 42.39 C
ATOM 10 O3' A A 51 2.339 7.074 61.079 1.00 43.35 O
ATOM 11 C2' A A 51 3.191 7.966 63.176 1.00 41.71 C
ATOM 12 O2' A A 51 4.475 7.810 62.604 1.00 40.55 O
ATOM 13 C1' A A 51 2.645 9.361 62.893 1.00 41.14 C
ATOM 14 N9 A A 51 3.060 10.359 63.875 1.00 41.03 N
ATOM 15 C8 A A 51 2.413 10.699 65.031 1.00 40.84 C
ATOM 16 N7 A A 51 3.020 11.634 65.722 1.00 40.72 N
ATOM 17 C5 A A 51 4.143 11.929 64.966 1.00 40.89 C
ATOM 18 C6 A A 51 5.201 12.841 65.152 1.00 40.65 C
ATOM 19 N6 A A 51 5.294 13.656 66.208 1.00 40.26 N
ATOM 20 N1 A A 51 6.163 12.884 64.206 1.00 40.58 N
ATOM 21 C2 A A 51 6.071 12.065 63.151 1.00 40.56 C
ATOM 22 N3 A A 51 5.127 11.170 62.868 1.00 40.78 N
ATOM 23 C4 A A 51 4.184 11.150 63.825 1.00 41.00 C
ATOM 24 P U A 52 1.524 6.048 60.159 1.00 43.91 P
ATOM 25 OP1 U A 52 0.942 5.008 61.037 1.00 43.70 O
ATOM 26 OP2 U A 52 2.392 5.653 59.024 1.00 43.95 O
ATOM 27 O5' U A 52 0.349 6.964 59.582 1.00 43.85 O
TER
ATOM 1 O3' U B 52 -2.118 10.555 59.380 1.00 43.18 O
ATOM 2 P C B 53 -1.434 11.960 59.727 1.00 42.24 P
ATOM 3 OP1 C B 53 -2.518 12.967 59.765 1.00 42.77 O
ATOM 4 OP2 C B 53 -0.290 12.150 58.808 1.00 41.91 O
ATOM 5 O5' C B 53 -0.855 11.765 61.208 1.00 41.18 O
ATOM 6 C5' C B 53 -1.736 11.701 62.328 1.00 39.29 C
ATOM 7 C4' C B 53 -1.374 12.721 63.394 1.00 37.97 C
ATOM 8 O4' C B 53 -0.019 12.509 63.866 1.00 37.86 O
ATOM 9 C3' C B 53 -1.359 14.172 62.941 1.00 37.18 C
ATOM 10 O3' C B 53 -2.677 14.696 62.862 1.00 36.38 O
ATOM 11 C2' C B 53 -0.551 14.805 64.068 1.00 36.63 C
ATOM 12 O2' C B 53 -1.300 14.972 65.254 1.00 36.17 O
ATOM 13 C1' C B 53 0.532 13.749 64.279 1.00 37.04 C
ATOM 14 N1 C B 53 1.785 14.036 63.506 1.00 36.61 N
ATOM 15 C2 C B 53 2.664 15.026 63.965 1.00 36.85 C
ATOM 16 O2 C B 53 2.395 15.646 65.004 1.00 37.43 O
ATOM 17 N3 C B 53 3.791 15.286 63.257 1.00 36.79 N
ATOM 18 C4 C B 53 4.053 14.601 62.142 1.00 36.40 C
ATOM 19 N4 C B 53 5.180 14.895 61.486 1.00 36.32 N
ATOM 20 C5 C B 53 3.172 13.589 61.656 1.00 36.48 C
ATOM 21 C6 C B 53 2.061 13.342 62.362 1.00 36.57 C
ATOM 22 P U B 54 -2.988 15.885 61.836 1.00 35.97 P
ATOM 23 OP1 U B 54 -4.458 16.033 61.749 1.00 35.23 O
ATOM 24 OP2 U B 54 -2.202 15.647 60.604 1.00 35.36 O
ATOM 25 O5' U B 54 -2.365 17.171 62.562 1.00 35.56 O
TER
ATOM 2 P A A 51 0.103 8.025 66.652 1.00 40.31 P
ATOM 3 OP1 A A 51 -0.565 9.346 66.589 1.00 40.43 O
ATOM 4 OP2 A A 51 -0.689 6.808 66.941 1.00 40.76 O
ATOM 5 O5' A A 51 0.884 7.782 65.278 1.00 40.81 O
ATOM 6 C5' A A 51 0.155 7.406 64.107 1.00 41.41 C
ATOM 7 C4' A A 51 0.852 7.851 62.830 1.00 41.87 C
ATOM 8 O4' A A 51 1.234 9.248 62.935 1.00 42.16 O
ATOM 9 C3' A A 51 2.136 7.104 62.491 1.00 42.39 C
ATOM 10 O3' A A 51 2.339 7.074 61.079 1.00 43.35 O
ATOM 11 C2' A A 51 3.191 7.966 63.176 1.00 41.71 C
ATOM 12 O2' A A 51 4.475 7.810 62.604 1.00 40.55 O
ATOM 13 C1' A A 51 2.645 9.361 62.893 1.00 41.14 C
ATOM 14 N9 A A 51 3.060 10.359 63.875 1.00 41.03 N
ATOM 15 C8 A A 51 2.413 10.699 65.031 1.00 40.84 C
ATOM 16 N7 A A 51 3.020 11.634 65.722 1.00 40.72 N
ATOM 17 C5 A A 51 4.143 11.929 64.966 1.00 40.89 C
ATOM 18 C6 A A 51 5.201 12.841 65.152 1.00 40.65 C
ATOM 19 N6 A A 51 5.294 13.656 66.208 1.00 40.26 N
ATOM 20 N1 A A 51 6.163 12.884 64.206 1.00 40.58 N
ATOM 21 C2 A A 51 6.071 12.065 63.151 1.00 40.56 C
ATOM 22 N3 A A 51 5.127 11.170 62.868 1.00 40.78 N
ATOM 23 C4 A A 51 4.184 11.150 63.825 1.00 41.00 C
ATOM 24 P U A 52 1.524 6.048 60.159 1.00 43.91 P
ATOM 25 OP1 U A 52 0.942 5.008 61.037 1.00 43.70 O
ATOM 26 OP2 U A 52 2.392 5.653 59.024 1.00 43.95 O
ATOM 27 O5' U A 52 0.349 6.964 59.582 1.00 43.85 O
TER
ATOM 1 O3' U B 52 -2.118 10.555 59.380 1.00 43.18 O
ATOM 2 P C B 53 -1.434 11.960 59.727 1.00 42.24 P
ATOM 3 OP1 C B 53 -2.518 12.967 59.765 1.00 42.77 O
ATOM 4 OP2 C B 53 -0.290 12.150 58.808 1.00 41.91 O
ATOM 5 O5' C B 53 -0.855 11.765 61.208 1.00 41.18 O
ATOM 6 C5' C B 53 -1.736 11.701 62.328 1.00 39.29 C
ATOM 7 C4' C B 53 -1.374 12.721 63.394 1.00 37.97 C
ATOM 8 O4' C B 53 -0.019 12.509 63.866 1.00 37.86 O
ATOM 9 C3' C B 53 -1.359 14.172 62.941 1.00 37.18 C
ATOM 10 O3' C B 53 -2.677 14.696 62.862 1.00 36.38 O
ATOM 11 C2' C B 53 -0.551 14.805 64.068 1.00 36.63 C
ATOM 12 O2' C B 53 -1.300 14.972 65.254 1.00 36.17 O
ATOM 13 C1' C B 53 0.532 13.749 64.279 1.00 37.04 C
ATOM 14 N1 C B 53 1.785 14.036 63.506 1.00 36.61 N
ATOM 15 C2 C B 53 2.664 15.026 63.965 1.00 36.85 C
ATOM 16 O2 C B 53 2.395 15.646 65.004 1.00 37.43 O
ATOM 17 N3 C B 53 3.791 15.286 63.257 1.00 36.79 N
ATOM 18 C4 C B 53 4.053 14.601 62.142 1.00 36.40 C
ATOM 19 N4 C B 53 5.180 14.895 61.486 1.00 36.32 N
ATOM 20 C5 C B 53 3.172 13.589 61.656 1.00 36.48 C
ATOM 21 C6 C B 53 2.061 13.342 62.362 1.00 36.57 C
ATOM 22 P U B 54 -2.988 15.885 61.836 1.00 35.97 P
ATOM 23 OP1 U B 54 -4.458 16.033 61.749 1.00 35.23 O
ATOM 24 OP2 U B 54 -2.202 15.647 60.604 1.00 35.36 O
ATOM 25 O5' U B 54 -2.365 17.171 62.562 1.00 35.56 O
TER
Atoms:
OP1: (-0.565,9.346,66.589)
OP2: (-0.689,6.808,66.941)
C3': (2.136,7.104,62.491)
C1': (2.645,9.361,62.893)
C5': (0.155,7.406,64.107)
O4': (1.234,9.248,62.935)
C8: (2.413,10.699,65.031)
O2': (4.475,7.810,62.604)
C6: (5.201,12.841,65.152)
C5: (4.143,11.929,64.966)
C4: (4.184,11.150,63.825)
P: (0.103,8.025,66.652)
C4': (0.852,7.851,62.830)
C2': (3.191,7.966,63.176)
C2: (6.071,12.065,63.151)
N1: (6.163,12.884,64.206)
N3: (5.127,11.170,62.868)
N6: (5.294,13.656,66.208)
N7: (3.020,11.634,65.722)
N9: (3.060,10.359,63.875)
O5': (0.884,7.782,65.278)
O3': (2.339,7.074,61.079)
OP2: (-0.689,6.808,66.941)
C3': (2.136,7.104,62.491)
C1': (2.645,9.361,62.893)
C5': (0.155,7.406,64.107)
O4': (1.234,9.248,62.935)
C8: (2.413,10.699,65.031)
O2': (4.475,7.810,62.604)
C6: (5.201,12.841,65.152)
C5: (4.143,11.929,64.966)
C4: (4.184,11.150,63.825)
P: (0.103,8.025,66.652)
C4': (0.852,7.851,62.830)
C2': (3.191,7.966,63.176)
C2: (6.071,12.065,63.151)
N1: (6.163,12.884,64.206)
N3: (5.127,11.170,62.868)
N6: (5.294,13.656,66.208)
N7: (3.020,11.634,65.722)
N9: (3.060,10.359,63.875)
O5': (0.884,7.782,65.278)
O3': (2.339,7.074,61.079)
C2: (2.664,15.026,63.965)
OP1: (-2.518,12.967,59.765)
OP2: (-0.290,12.150,58.808)
C4: (4.053,14.601,62.142)
O5': (-0.855,11.765,61.208)
C3': (-1.359,14.172,62.941)
C1': (0.532,13.749,64.279)
O4': (-0.019,12.509,63.866)
C5': (-1.736,11.701,62.328)
P: (-1.434,11.960,59.727)
O2: (2.395,15.646,65.004)
C4': (-1.374,12.721,63.394)
C2': (-0.551,14.805,64.068)
O2': (-1.300,14.972,65.254)
N1: (1.785,14.036,63.506)
N3: (3.791,15.286,63.257)
N4: (5.180,14.895,61.486)
C6: (2.061,13.342,62.362)
C5: (3.172,13.589,61.656)
O3': (-2.677,14.696,62.862)
OP1: (-2.518,12.967,59.765)
OP2: (-0.290,12.150,58.808)
C4: (4.053,14.601,62.142)
O5': (-0.855,11.765,61.208)
C3': (-1.359,14.172,62.941)
C1': (0.532,13.749,64.279)
O4': (-0.019,12.509,63.866)
C5': (-1.736,11.701,62.328)
P: (-1.434,11.960,59.727)
O2: (2.395,15.646,65.004)
C4': (-1.374,12.721,63.394)
C2': (-0.551,14.805,64.068)
O2': (-1.300,14.972,65.254)
N1: (1.785,14.036,63.506)
N3: (3.791,15.286,63.257)
N4: (5.180,14.895,61.486)
C6: (2.061,13.342,62.362)
C5: (3.172,13.589,61.656)
O3': (-2.677,14.696,62.862)
Image (generated by PyMOL):