Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01278:0505
Extra
PDB:
ATOM 1 O3' A A1277 19.513 129.237 61.418 1.00 40.53 O
ATOM 2 P G A1278 19.399 129.156 63.012 1.00 40.92 P
ATOM 3 OP1 G A1278 20.001 127.862 63.399 1.00 41.33 O
ATOM 4 OP2 G A1278 18.011 129.460 63.417 1.00 41.28 O
ATOM 5 O5' G A1278 20.336 130.346 63.498 1.00 40.33 O
ATOM 6 C5' G A1278 21.739 130.371 63.148 1.00 40.19 C
ATOM 7 C4' G A1278 22.346 131.699 63.526 1.00 38.49 C
ATOM 8 O4' G A1278 21.707 132.747 62.756 1.00 40.54 O
ATOM 9 C3' G A1278 22.107 132.113 64.961 1.00 37.70 C
ATOM 10 O3' G A1278 23.019 131.493 65.844 1.00 36.56 O
ATOM 11 C2' G A1278 22.232 133.626 64.888 1.00 38.15 C
ATOM 12 O2' G A1278 23.560 134.083 64.786 1.00 38.26 O
ATOM 13 C1' G A1278 21.535 133.905 63.561 1.00 39.49 C
ATOM 14 N9 G A1278 20.104 134.138 63.732 1.00 39.65 N
ATOM 15 C8 G A1278 19.096 133.221 63.566 1.00 40.25 C
ATOM 16 N7 G A1278 17.915 133.707 63.831 1.00 41.92 N
ATOM 17 C5 G A1278 18.157 135.028 64.183 1.00 40.40 C
ATOM 18 C6 G A1278 17.261 136.044 64.581 1.00 39.70 C
ATOM 19 O6 G A1278 16.034 135.985 64.683 1.00 40.58 O
ATOM 20 N1 G A1278 17.924 137.227 64.868 1.00 39.02 N
ATOM 21 C2 G A1278 19.277 137.416 64.766 1.00 40.30 C
ATOM 22 N2 G A1278 19.733 138.648 65.083 1.00 40.75 N
ATOM 23 N3 G A1278 20.126 136.475 64.382 1.00 39.69 N
ATOM 24 C4 G A1278 19.501 135.313 64.115 1.00 39.48 C
ATOM 25 P C A1279 22.521 131.052 67.303 1.00 37.32 P
ATOM 26 OP1 C A1279 23.691 130.434 67.963 1.00 38.20 O
ATOM 27 OP2 C A1279 21.257 130.286 67.188 1.00 36.21 O
ATOM 28 O5' C A1279 22.226 132.431 68.035 1.00 35.19 O
TER
ATOM 1 O3' A B 504 23.152 146.281 61.086 1.00 44.82 O
ATOM 2 P U B 505 22.974 145.941 62.645 1.00 46.33 P
ATOM 3 OP1 U B 505 21.651 146.462 63.061 1.00 45.84 O
ATOM 4 OP2 U B 505 24.191 146.388 63.364 1.00 46.05 O
ATOM 5 O5' U B 505 22.906 144.352 62.689 1.00 42.91 O
ATOM 6 C5' U B 505 21.709 143.652 62.326 1.00 39.26 C
ATOM 7 C4' U B 505 21.912 142.170 62.496 1.00 39.11 C
ATOM 8 O4' U B 505 23.023 141.753 61.667 1.00 37.55 O
ATOM 9 C3' U B 505 22.282 141.727 63.901 1.00 37.40 C
ATOM 10 O3' U B 505 21.110 141.459 64.655 1.00 37.56 O
ATOM 11 C2' U B 505 23.048 140.440 63.657 1.00 37.30 C
ATOM 12 O2' U B 505 22.162 139.355 63.503 1.00 36.18 O
ATOM 13 C1' U B 505 23.756 140.744 62.329 1.00 38.74 C
ATOM 14 N1 U B 505 25.158 141.187 62.425 1.00 41.89 N
ATOM 15 C2 U B 505 26.142 140.219 62.598 1.00 43.57 C
ATOM 16 O2 U B 505 25.902 139.029 62.686 1.00 45.04 O
ATOM 17 N3 U B 505 27.425 140.700 62.656 1.00 44.75 N
ATOM 18 C4 U B 505 27.826 142.015 62.555 1.00 44.82 C
ATOM 19 O4 U B 505 29.031 142.279 62.569 1.00 44.88 O
ATOM 20 C5 U B 505 26.758 142.956 62.385 1.00 43.84 C
ATOM 21 C6 U B 505 25.494 142.524 62.331 1.00 42.93 C
ATOM 22 P G B 506 20.881 142.186 66.067 1.00 40.64 P
ATOM 23 OP1 G B 506 19.779 141.474 66.749 1.00 38.59 O
ATOM 24 OP2 G B 506 20.783 143.651 65.833 1.00 38.59 O
ATOM 25 O5' G B 506 22.215 141.877 66.872 1.00 41.35 O
TER
ATOM 2 P G A1278 19.399 129.156 63.012 1.00 40.92 P
ATOM 3 OP1 G A1278 20.001 127.862 63.399 1.00 41.33 O
ATOM 4 OP2 G A1278 18.011 129.460 63.417 1.00 41.28 O
ATOM 5 O5' G A1278 20.336 130.346 63.498 1.00 40.33 O
ATOM 6 C5' G A1278 21.739 130.371 63.148 1.00 40.19 C
ATOM 7 C4' G A1278 22.346 131.699 63.526 1.00 38.49 C
ATOM 8 O4' G A1278 21.707 132.747 62.756 1.00 40.54 O
ATOM 9 C3' G A1278 22.107 132.113 64.961 1.00 37.70 C
ATOM 10 O3' G A1278 23.019 131.493 65.844 1.00 36.56 O
ATOM 11 C2' G A1278 22.232 133.626 64.888 1.00 38.15 C
ATOM 12 O2' G A1278 23.560 134.083 64.786 1.00 38.26 O
ATOM 13 C1' G A1278 21.535 133.905 63.561 1.00 39.49 C
ATOM 14 N9 G A1278 20.104 134.138 63.732 1.00 39.65 N
ATOM 15 C8 G A1278 19.096 133.221 63.566 1.00 40.25 C
ATOM 16 N7 G A1278 17.915 133.707 63.831 1.00 41.92 N
ATOM 17 C5 G A1278 18.157 135.028 64.183 1.00 40.40 C
ATOM 18 C6 G A1278 17.261 136.044 64.581 1.00 39.70 C
ATOM 19 O6 G A1278 16.034 135.985 64.683 1.00 40.58 O
ATOM 20 N1 G A1278 17.924 137.227 64.868 1.00 39.02 N
ATOM 21 C2 G A1278 19.277 137.416 64.766 1.00 40.30 C
ATOM 22 N2 G A1278 19.733 138.648 65.083 1.00 40.75 N
ATOM 23 N3 G A1278 20.126 136.475 64.382 1.00 39.69 N
ATOM 24 C4 G A1278 19.501 135.313 64.115 1.00 39.48 C
ATOM 25 P C A1279 22.521 131.052 67.303 1.00 37.32 P
ATOM 26 OP1 C A1279 23.691 130.434 67.963 1.00 38.20 O
ATOM 27 OP2 C A1279 21.257 130.286 67.188 1.00 36.21 O
ATOM 28 O5' C A1279 22.226 132.431 68.035 1.00 35.19 O
TER
ATOM 1 O3' A B 504 23.152 146.281 61.086 1.00 44.82 O
ATOM 2 P U B 505 22.974 145.941 62.645 1.00 46.33 P
ATOM 3 OP1 U B 505 21.651 146.462 63.061 1.00 45.84 O
ATOM 4 OP2 U B 505 24.191 146.388 63.364 1.00 46.05 O
ATOM 5 O5' U B 505 22.906 144.352 62.689 1.00 42.91 O
ATOM 6 C5' U B 505 21.709 143.652 62.326 1.00 39.26 C
ATOM 7 C4' U B 505 21.912 142.170 62.496 1.00 39.11 C
ATOM 8 O4' U B 505 23.023 141.753 61.667 1.00 37.55 O
ATOM 9 C3' U B 505 22.282 141.727 63.901 1.00 37.40 C
ATOM 10 O3' U B 505 21.110 141.459 64.655 1.00 37.56 O
ATOM 11 C2' U B 505 23.048 140.440 63.657 1.00 37.30 C
ATOM 12 O2' U B 505 22.162 139.355 63.503 1.00 36.18 O
ATOM 13 C1' U B 505 23.756 140.744 62.329 1.00 38.74 C
ATOM 14 N1 U B 505 25.158 141.187 62.425 1.00 41.89 N
ATOM 15 C2 U B 505 26.142 140.219 62.598 1.00 43.57 C
ATOM 16 O2 U B 505 25.902 139.029 62.686 1.00 45.04 O
ATOM 17 N3 U B 505 27.425 140.700 62.656 1.00 44.75 N
ATOM 18 C4 U B 505 27.826 142.015 62.555 1.00 44.82 C
ATOM 19 O4 U B 505 29.031 142.279 62.569 1.00 44.88 O
ATOM 20 C5 U B 505 26.758 142.956 62.385 1.00 43.84 C
ATOM 21 C6 U B 505 25.494 142.524 62.331 1.00 42.93 C
ATOM 22 P G B 506 20.881 142.186 66.067 1.00 40.64 P
ATOM 23 OP1 G B 506 19.779 141.474 66.749 1.00 38.59 O
ATOM 24 OP2 G B 506 20.783 143.651 65.833 1.00 38.59 O
ATOM 25 O5' G B 506 22.215 141.877 66.872 1.00 41.35 O
TER
Atoms:
OP1: (20.001,127.862,63.399)
OP2: (18.011,129.460,63.417)
C3': (22.107,132.113,64.961)
C1': (21.535,133.905,63.561)
C5': (21.739,130.371,63.148)
O6: (16.034,135.985,64.683)
O4': (21.707,132.747,62.756)
C8: (19.096,133.221,63.566)
C2: (19.277,137.416,64.766)
C6: (17.261,136.044,64.581)
C5: (18.157,135.028,64.183)
C4: (19.501,135.313,64.115)
P: (19.399,129.156,63.012)
C4': (22.346,131.699,63.526)
C2': (22.232,133.626,64.888)
O2': (23.560,134.083,64.786)
N1: (17.924,137.227,64.868)
N2: (19.733,138.648,65.083)
N3: (20.126,136.475,64.382)
N7: (17.915,133.707,63.831)
N9: (20.104,134.138,63.732)
O5': (20.336,130.346,63.498)
O3': (23.019,131.493,65.844)
OP2: (18.011,129.460,63.417)
C3': (22.107,132.113,64.961)
C1': (21.535,133.905,63.561)
C5': (21.739,130.371,63.148)
O6: (16.034,135.985,64.683)
O4': (21.707,132.747,62.756)
C8: (19.096,133.221,63.566)
C2: (19.277,137.416,64.766)
C6: (17.261,136.044,64.581)
C5: (18.157,135.028,64.183)
C4: (19.501,135.313,64.115)
P: (19.399,129.156,63.012)
C4': (22.346,131.699,63.526)
C2': (22.232,133.626,64.888)
O2': (23.560,134.083,64.786)
N1: (17.924,137.227,64.868)
N2: (19.733,138.648,65.083)
N3: (20.126,136.475,64.382)
N7: (17.915,133.707,63.831)
N9: (20.104,134.138,63.732)
O5': (20.336,130.346,63.498)
O3': (23.019,131.493,65.844)
C4: (27.826,142.015,62.555)
N3: (27.425,140.700,62.656)
OP1: (21.651,146.462,63.061)
OP2: (24.191,146.388,63.364)
C2: (26.142,140.219,62.598)
C1': (23.756,140.744,62.329)
C3': (22.282,141.727,63.901)
O5': (22.906,144.352,62.689)
O4': (23.023,141.753,61.667)
C5': (21.709,143.652,62.326)
P: (22.974,145.941,62.645)
C4': (21.912,142.170,62.496)
C2': (23.048,140.440,63.657)
O2': (22.162,139.355,63.503)
N1: (25.158,141.187,62.425)
O4: (29.031,142.279,62.569)
O2: (25.902,139.029,62.686)
C6: (25.494,142.524,62.331)
C5: (26.758,142.956,62.385)
O3': (21.110,141.459,64.655)
N3: (27.425,140.700,62.656)
OP1: (21.651,146.462,63.061)
OP2: (24.191,146.388,63.364)
C2: (26.142,140.219,62.598)
C1': (23.756,140.744,62.329)
C3': (22.282,141.727,63.901)
O5': (22.906,144.352,62.689)
O4': (23.023,141.753,61.667)
C5': (21.709,143.652,62.326)
P: (22.974,145.941,62.645)
C4': (21.912,142.170,62.496)
C2': (23.048,140.440,63.657)
O2': (22.162,139.355,63.503)
N1: (25.158,141.187,62.425)
O4: (29.031,142.279,62.569)
O2: (25.902,139.029,62.686)
C6: (25.494,142.524,62.331)
C5: (26.758,142.956,62.385)
O3': (21.110,141.459,64.655)
Image (generated by PyMOL):