Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:3109:311
Extra
PDB:
ATOM 1 O3' G A 108 30.548 -63.106 -0.223 1.00 79.99 O
ATOM 2 P G A 109 29.465 -64.236 0.119 1.00 74.70 P
ATOM 3 OP1 G A 109 29.923 -65.482 -0.559 1.00 75.62 O
ATOM 4 OP2 G A 109 28.140 -63.678 -0.197 1.00 74.87 O
ATOM 5 O5' G A 109 29.578 -64.403 1.684 1.00 73.62 O
ATOM 6 C5' G A 109 30.263 -65.494 2.248 1.00 73.56 C
ATOM 7 C4' G A 109 30.245 -65.427 3.748 1.00 72.46 C
ATOM 8 O4' G A 109 29.980 -64.077 4.201 1.00 71.66 O
ATOM 9 C3' G A 109 29.168 -66.216 4.432 1.00 72.41 C
ATOM 10 O3' G A 109 29.401 -67.604 4.386 1.00 72.95 O
ATOM 11 C2' G A 109 29.214 -65.623 5.831 1.00 71.19 C
ATOM 12 O2' G A 109 30.351 -66.113 6.531 1.00 70.76 O
ATOM 13 C1' G A 109 29.458 -64.140 5.509 1.00 70.83 C
ATOM 14 N9 G A 109 28.237 -63.306 5.590 1.00 70.62 N
ATOM 15 C8 G A 109 27.622 -62.682 4.550 1.00 71.19 C
ATOM 16 N7 G A 109 26.605 -61.949 4.913 1.00 70.80 N
ATOM 17 C5 G A 109 26.533 -62.078 6.280 1.00 69.92 C
ATOM 18 C6 G A 109 25.621 -61.493 7.213 1.00 69.20 C
ATOM 19 O6 G A 109 24.656 -60.742 7.017 1.00 69.20 O
ATOM 20 N1 G A 109 25.906 -61.864 8.519 1.00 68.41 N
ATOM 21 C2 G A 109 26.949 -62.682 8.880 1.00 68.32 C
ATOM 22 N2 G A 109 27.038 -62.909 10.206 1.00 67.50 N
ATOM 23 N3 G A 109 27.820 -63.233 8.014 1.00 68.98 N
ATOM 24 C4 G A 109 27.550 -62.896 6.724 1.00 69.77 C
ATOM 25 P U A 110 28.175 -68.616 4.188 1.00 69.90 P
ATOM 26 OP1 U A 110 28.748 -69.958 3.943 1.00 70.55 O
ATOM 27 OP2 U A 110 27.254 -68.028 3.173 1.00 70.50 O
ATOM 28 O5' U A 110 27.504 -68.589 5.604 1.00 68.98 O
TER
ATOM 1 O3' A B 10 27.058 -65.922 16.145 1.00 59.18 O
ATOM 2 P U B 11 28.027 -64.717 15.737 1.00 64.32 P
ATOM 3 OP1 U B 11 29.375 -65.103 16.142 1.00 64.00 O
ATOM 4 OP2 U B 11 27.463 -63.500 16.270 1.00 63.63 O
ATOM 5 O5' U B 11 27.942 -64.703 14.162 1.00 65.34 O
ATOM 6 C5' U B 11 26.699 -64.620 13.484 1.00 65.93 C
ATOM 7 C4' U B 11 26.662 -65.521 12.269 1.00 67.06 C
ATOM 8 O4' U B 11 27.877 -65.352 11.477 1.00 67.35 O
ATOM 9 C3' U B 11 26.568 -67.013 12.565 1.00 67.44 C
ATOM 10 O3' U B 11 25.813 -67.633 11.556 1.00 68.45 O
ATOM 11 C2' U B 11 27.993 -67.483 12.423 1.00 67.51 C
ATOM 12 O2' U B 11 28.111 -68.860 12.134 1.00 68.21 O
ATOM 13 C1' U B 11 28.467 -66.621 11.264 1.00 67.88 C
ATOM 14 N1 U B 11 29.900 -66.466 11.230 1.00 67.65 N
ATOM 15 C2 U B 11 30.594 -67.009 10.194 1.00 68.47 C
ATOM 16 O2 U B 11 30.075 -67.587 9.274 1.00 69.38 O
ATOM 17 N3 U B 11 31.934 -66.854 10.273 1.00 68.19 N
ATOM 18 C4 U B 11 32.602 -66.216 11.279 1.00 67.19 C
ATOM 19 O4 U B 11 33.801 -66.136 11.217 1.00 67.06 O
ATOM 20 C5 U B 11 31.826 -65.682 12.329 1.00 66.38 C
ATOM 21 C6 U B 11 30.510 -65.849 12.276 1.00 66.65 C
ATOM 22 P A B 12 24.332 -68.027 11.871 1.00 67.82 P
ATOM 23 OP1 A B 12 23.642 -68.341 10.572 1.00 68.90 O
ATOM 24 OP2 A B 12 23.800 -66.944 12.736 1.00 66.92 O
ATOM 25 O5' A B 12 24.483 -69.344 12.704 1.00 67.76 O
TER
ATOM 2 P G A 109 29.465 -64.236 0.119 1.00 74.70 P
ATOM 3 OP1 G A 109 29.923 -65.482 -0.559 1.00 75.62 O
ATOM 4 OP2 G A 109 28.140 -63.678 -0.197 1.00 74.87 O
ATOM 5 O5' G A 109 29.578 -64.403 1.684 1.00 73.62 O
ATOM 6 C5' G A 109 30.263 -65.494 2.248 1.00 73.56 C
ATOM 7 C4' G A 109 30.245 -65.427 3.748 1.00 72.46 C
ATOM 8 O4' G A 109 29.980 -64.077 4.201 1.00 71.66 O
ATOM 9 C3' G A 109 29.168 -66.216 4.432 1.00 72.41 C
ATOM 10 O3' G A 109 29.401 -67.604 4.386 1.00 72.95 O
ATOM 11 C2' G A 109 29.214 -65.623 5.831 1.00 71.19 C
ATOM 12 O2' G A 109 30.351 -66.113 6.531 1.00 70.76 O
ATOM 13 C1' G A 109 29.458 -64.140 5.509 1.00 70.83 C
ATOM 14 N9 G A 109 28.237 -63.306 5.590 1.00 70.62 N
ATOM 15 C8 G A 109 27.622 -62.682 4.550 1.00 71.19 C
ATOM 16 N7 G A 109 26.605 -61.949 4.913 1.00 70.80 N
ATOM 17 C5 G A 109 26.533 -62.078 6.280 1.00 69.92 C
ATOM 18 C6 G A 109 25.621 -61.493 7.213 1.00 69.20 C
ATOM 19 O6 G A 109 24.656 -60.742 7.017 1.00 69.20 O
ATOM 20 N1 G A 109 25.906 -61.864 8.519 1.00 68.41 N
ATOM 21 C2 G A 109 26.949 -62.682 8.880 1.00 68.32 C
ATOM 22 N2 G A 109 27.038 -62.909 10.206 1.00 67.50 N
ATOM 23 N3 G A 109 27.820 -63.233 8.014 1.00 68.98 N
ATOM 24 C4 G A 109 27.550 -62.896 6.724 1.00 69.77 C
ATOM 25 P U A 110 28.175 -68.616 4.188 1.00 69.90 P
ATOM 26 OP1 U A 110 28.748 -69.958 3.943 1.00 70.55 O
ATOM 27 OP2 U A 110 27.254 -68.028 3.173 1.00 70.50 O
ATOM 28 O5' U A 110 27.504 -68.589 5.604 1.00 68.98 O
TER
ATOM 1 O3' A B 10 27.058 -65.922 16.145 1.00 59.18 O
ATOM 2 P U B 11 28.027 -64.717 15.737 1.00 64.32 P
ATOM 3 OP1 U B 11 29.375 -65.103 16.142 1.00 64.00 O
ATOM 4 OP2 U B 11 27.463 -63.500 16.270 1.00 63.63 O
ATOM 5 O5' U B 11 27.942 -64.703 14.162 1.00 65.34 O
ATOM 6 C5' U B 11 26.699 -64.620 13.484 1.00 65.93 C
ATOM 7 C4' U B 11 26.662 -65.521 12.269 1.00 67.06 C
ATOM 8 O4' U B 11 27.877 -65.352 11.477 1.00 67.35 O
ATOM 9 C3' U B 11 26.568 -67.013 12.565 1.00 67.44 C
ATOM 10 O3' U B 11 25.813 -67.633 11.556 1.00 68.45 O
ATOM 11 C2' U B 11 27.993 -67.483 12.423 1.00 67.51 C
ATOM 12 O2' U B 11 28.111 -68.860 12.134 1.00 68.21 O
ATOM 13 C1' U B 11 28.467 -66.621 11.264 1.00 67.88 C
ATOM 14 N1 U B 11 29.900 -66.466 11.230 1.00 67.65 N
ATOM 15 C2 U B 11 30.594 -67.009 10.194 1.00 68.47 C
ATOM 16 O2 U B 11 30.075 -67.587 9.274 1.00 69.38 O
ATOM 17 N3 U B 11 31.934 -66.854 10.273 1.00 68.19 N
ATOM 18 C4 U B 11 32.602 -66.216 11.279 1.00 67.19 C
ATOM 19 O4 U B 11 33.801 -66.136 11.217 1.00 67.06 O
ATOM 20 C5 U B 11 31.826 -65.682 12.329 1.00 66.38 C
ATOM 21 C6 U B 11 30.510 -65.849 12.276 1.00 66.65 C
ATOM 22 P A B 12 24.332 -68.027 11.871 1.00 67.82 P
ATOM 23 OP1 A B 12 23.642 -68.341 10.572 1.00 68.90 O
ATOM 24 OP2 A B 12 23.800 -66.944 12.736 1.00 66.92 O
ATOM 25 O5' A B 12 24.483 -69.344 12.704 1.00 67.76 O
TER
Atoms:
OP1: (29.923,-65.482,-0.559)
OP2: (28.140,-63.678,-0.197)
C3': (29.168,-66.216,4.432)
C1': (29.458,-64.140,5.509)
C5': (30.263,-65.494,2.248)
O6: (24.656,-60.742,7.017)
O4': (29.980,-64.077,4.201)
C8: (27.622,-62.682,4.550)
C2: (26.949,-62.682,8.880)
C6: (25.621,-61.493,7.213)
C5: (26.533,-62.078,6.280)
C4: (27.550,-62.896,6.724)
P: (29.465,-64.236,0.119)
C4': (30.245,-65.427,3.748)
C2': (29.214,-65.623,5.831)
O2': (30.351,-66.113,6.531)
N1: (25.906,-61.864,8.519)
N2: (27.038,-62.909,10.206)
N3: (27.820,-63.233,8.014)
N7: (26.605,-61.949,4.913)
N9: (28.237,-63.306,5.590)
O5': (29.578,-64.403,1.684)
O3': (29.401,-67.604,4.386)
OP2: (28.140,-63.678,-0.197)
C3': (29.168,-66.216,4.432)
C1': (29.458,-64.140,5.509)
C5': (30.263,-65.494,2.248)
O6: (24.656,-60.742,7.017)
O4': (29.980,-64.077,4.201)
C8: (27.622,-62.682,4.550)
C2: (26.949,-62.682,8.880)
C6: (25.621,-61.493,7.213)
C5: (26.533,-62.078,6.280)
C4: (27.550,-62.896,6.724)
P: (29.465,-64.236,0.119)
C4': (30.245,-65.427,3.748)
C2': (29.214,-65.623,5.831)
O2': (30.351,-66.113,6.531)
N1: (25.906,-61.864,8.519)
N2: (27.038,-62.909,10.206)
N3: (27.820,-63.233,8.014)
N7: (26.605,-61.949,4.913)
N9: (28.237,-63.306,5.590)
O5': (29.578,-64.403,1.684)
O3': (29.401,-67.604,4.386)
C4: (32.602,-66.216,11.279)
N3: (31.934,-66.854,10.273)
OP1: (29.375,-65.103,16.142)
OP2: (27.463,-63.500,16.270)
C2: (30.594,-67.009,10.194)
C1': (28.467,-66.621,11.264)
C3': (26.568,-67.013,12.565)
O5': (27.942,-64.703,14.162)
O4': (27.877,-65.352,11.477)
C5': (26.699,-64.620,13.484)
P: (28.027,-64.717,15.737)
C4': (26.662,-65.521,12.269)
C2': (27.993,-67.483,12.423)
O2': (28.111,-68.860,12.134)
N1: (29.900,-66.466,11.230)
O4: (33.801,-66.136,11.217)
O2: (30.075,-67.587,9.274)
C6: (30.510,-65.849,12.276)
C5: (31.826,-65.682,12.329)
O3': (25.813,-67.633,11.556)
N3: (31.934,-66.854,10.273)
OP1: (29.375,-65.103,16.142)
OP2: (27.463,-63.500,16.270)
C2: (30.594,-67.009,10.194)
C1': (28.467,-66.621,11.264)
C3': (26.568,-67.013,12.565)
O5': (27.942,-64.703,14.162)
O4': (27.877,-65.352,11.477)
C5': (26.699,-64.620,13.484)
P: (28.027,-64.717,15.737)
C4': (26.662,-65.521,12.269)
C2': (27.993,-67.483,12.423)
O2': (28.111,-68.860,12.134)
N1: (29.900,-66.466,11.230)
O4: (33.801,-66.136,11.217)
O2: (30.075,-67.587,9.274)
C6: (30.510,-65.849,12.276)
C5: (31.826,-65.682,12.329)
O3': (25.813,-67.633,11.556)
Image (generated by PyMOL):