Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:B105:B13
Extra
PDB:
ATOM 1 O3' G A 104 -161.450 -77.055 -0.819 1.00 1.17 O
ATOM 2 P G A 105 -162.451 -76.219 0.112 1.00 0.07 P
ATOM 3 OP1 G A 105 -163.662 -77.062 0.321 1.00 0.07 O
ATOM 4 OP2 G A 105 -162.604 -74.854 -0.523 1.00 0.07 O
ATOM 5 O5' G A 105 -161.639 -76.090 1.481 1.00 0.07 O
ATOM 6 C5' G A 105 -161.798 -77.033 2.525 1.00 0.07 C
ATOM 7 C4' G A 105 -161.144 -76.558 3.807 1.00 0.07 C
ATOM 8 O4' G A 105 -159.946 -75.834 3.507 1.00 0.07 O
ATOM 9 C3' G A 105 -161.940 -75.585 4.638 1.00 0.07 C
ATOM 10 O3' G A 105 -162.894 -76.217 5.443 1.00 0.07 O
ATOM 11 C2' G A 105 -160.886 -74.877 5.438 1.00 0.07 C
ATOM 12 O2' G A 105 -160.508 -75.667 6.539 1.00 0.07 O
ATOM 13 C1' G A 105 -159.740 -74.837 4.467 1.00 0.07 C
ATOM 14 N9 G A 105 -159.631 -73.562 3.775 1.00 0.01 N
ATOM 15 C8 G A 105 -159.826 -73.408 2.441 1.00 0.01 C
ATOM 16 N7 G A 105 -159.599 -72.196 2.038 1.00 0.01 N
ATOM 17 C5 G A 105 -159.217 -71.525 3.177 1.00 0.01 C
ATOM 18 C6 G A 105 -158.845 -70.191 3.326 1.00 0.01 C
ATOM 19 O6 G A 105 -158.755 -69.341 2.481 1.00 0.01 O
ATOM 20 N1 G A 105 -158.537 -69.897 4.616 1.00 0.01 N
ATOM 21 C2 G A 105 -158.563 -70.797 5.644 1.00 0.01 C
ATOM 22 N2 G A 105 -158.215 -70.297 6.834 1.00 0.01 N
ATOM 23 N3 G A 105 -158.902 -72.073 5.538 1.00 0.01 N
ATOM 24 C4 G A 105 -159.212 -72.361 4.265 1.00 0.01 C
ATOM 25 P G A 106 -164.363 -75.617 5.498 1.00 3.65 P
ATOM 26 OP1 G A 106 -165.128 -76.486 6.460 1.00 3.65 O
ATOM 27 OP2 G A 106 -164.839 -75.476 4.089 1.00 3.65 O
ATOM 28 O5' G A 106 -164.122 -74.181 6.121 1.00 3.65 O
TER
ATOM 1 O3' G B 12 -156.911 -68.390 12.967 1.00 3.14 O
ATOM 2 P U B 13 -155.959 -69.629 12.643 1.00 8.13 P
ATOM 3 OP1 U B 13 -156.088 -70.589 13.784 1.00 8.13 O
ATOM 4 OP2 U B 13 -154.625 -69.092 12.316 1.00 8.13 O
ATOM 5 O5' U B 13 -156.625 -70.239 11.332 1.00 8.13 O
ATOM 6 C5' U B 13 -157.172 -69.385 10.337 1.00 8.13 C
ATOM 7 C4' U B 13 -158.651 -69.636 10.114 1.00 8.13 C
ATOM 8 O4' U B 13 -158.844 -70.990 9.614 1.00 8.13 O
ATOM 9 C3' U B 13 -159.536 -69.514 11.356 1.00 8.13 C
ATOM 10 O3' U B 13 -160.825 -68.997 10.990 1.00 8.13 O
ATOM 11 C2' U B 13 -159.659 -70.964 11.809 1.00 8.13 C
ATOM 12 O2' U B 13 -160.782 -71.246 12.598 1.00 8.13 O
ATOM 13 C1' U B 13 -159.702 -71.701 10.480 1.00 8.13 C
ATOM 14 N1 U B 13 -159.213 -73.071 10.568 1.00 8.64 N
ATOM 15 C2 U B 13 -160.084 -74.141 10.579 1.00 8.64 C
ATOM 16 O2 U B 13 -161.280 -74.065 10.512 1.00 8.64 O
ATOM 17 N3 U B 13 -159.514 -75.368 10.668 1.00 8.64 N
ATOM 18 C4 U B 13 -158.164 -75.636 10.758 1.00 8.64 C
ATOM 19 O4 U B 13 -157.798 -76.824 10.843 1.00 8.64 O
ATOM 20 C5 U B 13 -157.324 -74.471 10.744 1.00 8.64 C
ATOM 21 C6 U B 13 -157.870 -73.260 10.660 1.00 8.64 C
ATOM 22 P A B 14 -161.003 -67.422 10.678 1.00 1.63 P
ATOM 23 OP1 A B 14 -161.965 -67.288 9.564 1.00 1.63 O
ATOM 24 OP2 A B 14 -159.655 -66.863 10.518 1.00 1.63 O
ATOM 25 O5' A B 14 -161.642 -66.880 11.999 1.00 1.63 O
TER
ATOM 2 P G A 105 -162.451 -76.219 0.112 1.00 0.07 P
ATOM 3 OP1 G A 105 -163.662 -77.062 0.321 1.00 0.07 O
ATOM 4 OP2 G A 105 -162.604 -74.854 -0.523 1.00 0.07 O
ATOM 5 O5' G A 105 -161.639 -76.090 1.481 1.00 0.07 O
ATOM 6 C5' G A 105 -161.798 -77.033 2.525 1.00 0.07 C
ATOM 7 C4' G A 105 -161.144 -76.558 3.807 1.00 0.07 C
ATOM 8 O4' G A 105 -159.946 -75.834 3.507 1.00 0.07 O
ATOM 9 C3' G A 105 -161.940 -75.585 4.638 1.00 0.07 C
ATOM 10 O3' G A 105 -162.894 -76.217 5.443 1.00 0.07 O
ATOM 11 C2' G A 105 -160.886 -74.877 5.438 1.00 0.07 C
ATOM 12 O2' G A 105 -160.508 -75.667 6.539 1.00 0.07 O
ATOM 13 C1' G A 105 -159.740 -74.837 4.467 1.00 0.07 C
ATOM 14 N9 G A 105 -159.631 -73.562 3.775 1.00 0.01 N
ATOM 15 C8 G A 105 -159.826 -73.408 2.441 1.00 0.01 C
ATOM 16 N7 G A 105 -159.599 -72.196 2.038 1.00 0.01 N
ATOM 17 C5 G A 105 -159.217 -71.525 3.177 1.00 0.01 C
ATOM 18 C6 G A 105 -158.845 -70.191 3.326 1.00 0.01 C
ATOM 19 O6 G A 105 -158.755 -69.341 2.481 1.00 0.01 O
ATOM 20 N1 G A 105 -158.537 -69.897 4.616 1.00 0.01 N
ATOM 21 C2 G A 105 -158.563 -70.797 5.644 1.00 0.01 C
ATOM 22 N2 G A 105 -158.215 -70.297 6.834 1.00 0.01 N
ATOM 23 N3 G A 105 -158.902 -72.073 5.538 1.00 0.01 N
ATOM 24 C4 G A 105 -159.212 -72.361 4.265 1.00 0.01 C
ATOM 25 P G A 106 -164.363 -75.617 5.498 1.00 3.65 P
ATOM 26 OP1 G A 106 -165.128 -76.486 6.460 1.00 3.65 O
ATOM 27 OP2 G A 106 -164.839 -75.476 4.089 1.00 3.65 O
ATOM 28 O5' G A 106 -164.122 -74.181 6.121 1.00 3.65 O
TER
ATOM 1 O3' G B 12 -156.911 -68.390 12.967 1.00 3.14 O
ATOM 2 P U B 13 -155.959 -69.629 12.643 1.00 8.13 P
ATOM 3 OP1 U B 13 -156.088 -70.589 13.784 1.00 8.13 O
ATOM 4 OP2 U B 13 -154.625 -69.092 12.316 1.00 8.13 O
ATOM 5 O5' U B 13 -156.625 -70.239 11.332 1.00 8.13 O
ATOM 6 C5' U B 13 -157.172 -69.385 10.337 1.00 8.13 C
ATOM 7 C4' U B 13 -158.651 -69.636 10.114 1.00 8.13 C
ATOM 8 O4' U B 13 -158.844 -70.990 9.614 1.00 8.13 O
ATOM 9 C3' U B 13 -159.536 -69.514 11.356 1.00 8.13 C
ATOM 10 O3' U B 13 -160.825 -68.997 10.990 1.00 8.13 O
ATOM 11 C2' U B 13 -159.659 -70.964 11.809 1.00 8.13 C
ATOM 12 O2' U B 13 -160.782 -71.246 12.598 1.00 8.13 O
ATOM 13 C1' U B 13 -159.702 -71.701 10.480 1.00 8.13 C
ATOM 14 N1 U B 13 -159.213 -73.071 10.568 1.00 8.64 N
ATOM 15 C2 U B 13 -160.084 -74.141 10.579 1.00 8.64 C
ATOM 16 O2 U B 13 -161.280 -74.065 10.512 1.00 8.64 O
ATOM 17 N3 U B 13 -159.514 -75.368 10.668 1.00 8.64 N
ATOM 18 C4 U B 13 -158.164 -75.636 10.758 1.00 8.64 C
ATOM 19 O4 U B 13 -157.798 -76.824 10.843 1.00 8.64 O
ATOM 20 C5 U B 13 -157.324 -74.471 10.744 1.00 8.64 C
ATOM 21 C6 U B 13 -157.870 -73.260 10.660 1.00 8.64 C
ATOM 22 P A B 14 -161.003 -67.422 10.678 1.00 1.63 P
ATOM 23 OP1 A B 14 -161.965 -67.288 9.564 1.00 1.63 O
ATOM 24 OP2 A B 14 -159.655 -66.863 10.518 1.00 1.63 O
ATOM 25 O5' A B 14 -161.642 -66.880 11.999 1.00 1.63 O
TER
Atoms:
OP1: (-163.662,-77.062,0.321)
OP2: (-162.604,-74.854,-0.523)
C3': (-161.940,-75.585,4.638)
C1': (-159.740,-74.837,4.467)
C5': (-161.798,-77.033,2.525)
O6: (-158.755,-69.341,2.481)
O4': (-159.946,-75.834,3.507)
C8: (-159.826,-73.408,2.441)
C2: (-158.563,-70.797,5.644)
C6: (-158.845,-70.191,3.326)
C5: (-159.217,-71.525,3.177)
C4: (-159.212,-72.361,4.265)
P: (-162.451,-76.219,0.112)
C4': (-161.144,-76.558,3.807)
C2': (-160.886,-74.877,5.438)
O2': (-160.508,-75.667,6.539)
N1: (-158.537,-69.897,4.616)
N2: (-158.215,-70.297,6.834)
N3: (-158.902,-72.073,5.538)
N7: (-159.599,-72.196,2.038)
N9: (-159.631,-73.562,3.775)
O5': (-161.639,-76.090,1.481)
O3': (-162.894,-76.217,5.443)
OP2: (-162.604,-74.854,-0.523)
C3': (-161.940,-75.585,4.638)
C1': (-159.740,-74.837,4.467)
C5': (-161.798,-77.033,2.525)
O6: (-158.755,-69.341,2.481)
O4': (-159.946,-75.834,3.507)
C8: (-159.826,-73.408,2.441)
C2: (-158.563,-70.797,5.644)
C6: (-158.845,-70.191,3.326)
C5: (-159.217,-71.525,3.177)
C4: (-159.212,-72.361,4.265)
P: (-162.451,-76.219,0.112)
C4': (-161.144,-76.558,3.807)
C2': (-160.886,-74.877,5.438)
O2': (-160.508,-75.667,6.539)
N1: (-158.537,-69.897,4.616)
N2: (-158.215,-70.297,6.834)
N3: (-158.902,-72.073,5.538)
N7: (-159.599,-72.196,2.038)
N9: (-159.631,-73.562,3.775)
O5': (-161.639,-76.090,1.481)
O3': (-162.894,-76.217,5.443)
C4: (-158.164,-75.636,10.758)
N3: (-159.514,-75.368,10.668)
OP1: (-156.088,-70.589,13.784)
OP2: (-154.625,-69.092,12.316)
C2: (-160.084,-74.141,10.579)
C1': (-159.702,-71.701,10.480)
C3': (-159.536,-69.514,11.356)
O5': (-156.625,-70.239,11.332)
O4': (-158.844,-70.990,9.614)
C5': (-157.172,-69.385,10.337)
P: (-155.959,-69.629,12.643)
C4': (-158.651,-69.636,10.114)
C2': (-159.659,-70.964,11.809)
O2': (-160.782,-71.246,12.598)
N1: (-159.213,-73.071,10.568)
O4: (-157.798,-76.824,10.843)
O2: (-161.280,-74.065,10.512)
C6: (-157.870,-73.260,10.660)
C5: (-157.324,-74.471,10.744)
O3': (-160.825,-68.997,10.990)
N3: (-159.514,-75.368,10.668)
OP1: (-156.088,-70.589,13.784)
OP2: (-154.625,-69.092,12.316)
C2: (-160.084,-74.141,10.579)
C1': (-159.702,-71.701,10.480)
C3': (-159.536,-69.514,11.356)
O5': (-156.625,-70.239,11.332)
O4': (-158.844,-70.990,9.614)
C5': (-157.172,-69.385,10.337)
P: (-155.959,-69.629,12.643)
C4': (-158.651,-69.636,10.114)
C2': (-159.659,-70.964,11.809)
O2': (-160.782,-71.246,12.598)
N1: (-159.213,-73.071,10.568)
O4: (-157.798,-76.824,10.843)
O2: (-161.280,-74.065,10.512)
C6: (-157.870,-73.260,10.660)
C5: (-157.324,-74.471,10.744)
O3': (-160.825,-68.997,10.990)
Image (generated by PyMOL):