Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A677:A718
Extra
PDB:
ATOM 1 O3' A A 676 49.986 72.762 43.208 1.00 60.65 O
ATOM 2 P G A 677 50.503 74.034 44.049 1.00 59.79 P
ATOM 3 OP1 G A 677 49.318 74.856 44.421 1.00 59.54 O
ATOM 4 OP2 G A 677 51.651 74.670 43.353 1.00 58.09 O
ATOM 5 O5' G A 677 51.064 73.364 45.381 1.00 59.17 O
ATOM 6 C5' G A 677 50.207 72.532 46.193 1.00 58.35 C
ATOM 7 C4' G A 677 50.757 71.128 46.282 1.00 57.62 C
ATOM 8 O4' G A 677 50.825 70.529 44.956 1.00 58.76 O
ATOM 9 C3' G A 677 52.186 71.017 46.771 1.00 58.01 C
ATOM 10 O3' G A 677 52.270 71.114 48.182 1.00 56.11 O
ATOM 11 C2' G A 677 52.569 69.628 46.287 1.00 59.03 C
ATOM 12 O2' G A 677 52.041 68.617 47.130 1.00 61.50 O
ATOM 13 C1' G A 677 51.903 69.591 44.905 1.00 58.80 C
ATOM 14 N9 G A 677 52.806 69.961 43.809 1.00 57.30 N
ATOM 15 C8 G A 677 52.857 71.184 43.192 1.00 57.85 C
ATOM 16 N7 G A 677 53.774 71.259 42.265 1.00 57.76 N
ATOM 17 C5 G A 677 54.363 70.006 42.252 1.00 56.14 C
ATOM 18 C6 G A 677 55.428 69.506 41.447 1.00 56.56 C
ATOM 19 O6 G A 677 56.076 70.094 40.572 1.00 57.21 O
ATOM 20 N1 G A 677 55.721 68.186 41.749 1.00 56.59 N
ATOM 21 C2 G A 677 55.074 67.443 42.707 1.00 56.87 C
ATOM 22 N2 G A 677 55.496 66.164 42.840 1.00 56.19 N
ATOM 23 N3 G A 677 54.081 67.905 43.479 1.00 56.17 N
ATOM 24 C4 G A 677 53.780 69.182 43.195 1.00 56.29 C
ATOM 25 P G A 678 53.552 71.804 48.868 1.00 54.16 P
ATOM 26 OP1 G A 678 53.139 71.954 50.288 1.00 53.43 O
ATOM 27 OP2 G A 678 53.943 73.000 48.090 1.00 53.68 O
ATOM 28 O5' G A 678 54.717 70.722 48.739 1.00 52.81 O
TER
ATOM 1 O3' G B 717 54.003 61.154 42.842 1.00 56.53 O
ATOM 2 P U B 718 55.426 60.491 43.096 1.00 55.09 P
ATOM 3 OP1 U B 718 55.957 60.266 41.739 1.00 56.83 O
ATOM 4 OP2 U B 718 55.233 59.349 44.016 1.00 53.52 O
ATOM 5 O5' U B 718 56.265 61.616 43.846 1.00 55.73 O
ATOM 6 C5' U B 718 56.426 62.934 43.289 1.00 54.99 C
ATOM 7 C4' U B 718 56.999 63.857 44.342 1.00 54.61 C
ATOM 8 O4' U B 718 56.014 64.061 45.395 1.00 54.04 O
ATOM 9 C3' U B 718 58.190 63.253 45.073 1.00 53.98 C
ATOM 10 O3' U B 718 59.387 63.549 44.379 1.00 55.68 O
ATOM 11 C2' U B 718 58.169 63.976 46.404 1.00 53.13 C
ATOM 12 O2' U B 718 58.755 65.249 46.249 1.00 53.94 O
ATOM 13 C1' U B 718 56.664 64.096 46.656 1.00 53.04 C
ATOM 14 N1 U B 718 56.155 62.993 47.487 1.00 53.48 N
ATOM 15 C2 U B 718 56.308 63.113 48.853 1.00 53.73 C
ATOM 16 O2 U B 718 56.803 64.086 49.380 1.00 53.57 O
ATOM 17 N3 U B 718 55.862 62.046 49.587 1.00 54.44 N
ATOM 18 C4 U B 718 55.290 60.884 49.112 1.00 54.66 C
ATOM 19 O4 U B 718 55.026 59.974 49.906 1.00 54.80 O
ATOM 20 C5 U B 718 55.138 60.836 47.686 1.00 55.18 C
ATOM 21 C6 U B 718 55.563 61.868 46.939 1.00 54.46 C
ATOM 22 P C B 719 60.764 62.859 44.826 1.00 57.43 P
ATOM 23 OP1 C B 719 61.777 63.258 43.833 1.00 58.22 O
ATOM 24 OP2 C B 719 60.460 61.424 45.029 1.00 58.52 O
ATOM 25 O5' C B 719 61.148 63.537 46.220 1.00 57.49 O
TER
ATOM 2 P G A 677 50.503 74.034 44.049 1.00 59.79 P
ATOM 3 OP1 G A 677 49.318 74.856 44.421 1.00 59.54 O
ATOM 4 OP2 G A 677 51.651 74.670 43.353 1.00 58.09 O
ATOM 5 O5' G A 677 51.064 73.364 45.381 1.00 59.17 O
ATOM 6 C5' G A 677 50.207 72.532 46.193 1.00 58.35 C
ATOM 7 C4' G A 677 50.757 71.128 46.282 1.00 57.62 C
ATOM 8 O4' G A 677 50.825 70.529 44.956 1.00 58.76 O
ATOM 9 C3' G A 677 52.186 71.017 46.771 1.00 58.01 C
ATOM 10 O3' G A 677 52.270 71.114 48.182 1.00 56.11 O
ATOM 11 C2' G A 677 52.569 69.628 46.287 1.00 59.03 C
ATOM 12 O2' G A 677 52.041 68.617 47.130 1.00 61.50 O
ATOM 13 C1' G A 677 51.903 69.591 44.905 1.00 58.80 C
ATOM 14 N9 G A 677 52.806 69.961 43.809 1.00 57.30 N
ATOM 15 C8 G A 677 52.857 71.184 43.192 1.00 57.85 C
ATOM 16 N7 G A 677 53.774 71.259 42.265 1.00 57.76 N
ATOM 17 C5 G A 677 54.363 70.006 42.252 1.00 56.14 C
ATOM 18 C6 G A 677 55.428 69.506 41.447 1.00 56.56 C
ATOM 19 O6 G A 677 56.076 70.094 40.572 1.00 57.21 O
ATOM 20 N1 G A 677 55.721 68.186 41.749 1.00 56.59 N
ATOM 21 C2 G A 677 55.074 67.443 42.707 1.00 56.87 C
ATOM 22 N2 G A 677 55.496 66.164 42.840 1.00 56.19 N
ATOM 23 N3 G A 677 54.081 67.905 43.479 1.00 56.17 N
ATOM 24 C4 G A 677 53.780 69.182 43.195 1.00 56.29 C
ATOM 25 P G A 678 53.552 71.804 48.868 1.00 54.16 P
ATOM 26 OP1 G A 678 53.139 71.954 50.288 1.00 53.43 O
ATOM 27 OP2 G A 678 53.943 73.000 48.090 1.00 53.68 O
ATOM 28 O5' G A 678 54.717 70.722 48.739 1.00 52.81 O
TER
ATOM 1 O3' G B 717 54.003 61.154 42.842 1.00 56.53 O
ATOM 2 P U B 718 55.426 60.491 43.096 1.00 55.09 P
ATOM 3 OP1 U B 718 55.957 60.266 41.739 1.00 56.83 O
ATOM 4 OP2 U B 718 55.233 59.349 44.016 1.00 53.52 O
ATOM 5 O5' U B 718 56.265 61.616 43.846 1.00 55.73 O
ATOM 6 C5' U B 718 56.426 62.934 43.289 1.00 54.99 C
ATOM 7 C4' U B 718 56.999 63.857 44.342 1.00 54.61 C
ATOM 8 O4' U B 718 56.014 64.061 45.395 1.00 54.04 O
ATOM 9 C3' U B 718 58.190 63.253 45.073 1.00 53.98 C
ATOM 10 O3' U B 718 59.387 63.549 44.379 1.00 55.68 O
ATOM 11 C2' U B 718 58.169 63.976 46.404 1.00 53.13 C
ATOM 12 O2' U B 718 58.755 65.249 46.249 1.00 53.94 O
ATOM 13 C1' U B 718 56.664 64.096 46.656 1.00 53.04 C
ATOM 14 N1 U B 718 56.155 62.993 47.487 1.00 53.48 N
ATOM 15 C2 U B 718 56.308 63.113 48.853 1.00 53.73 C
ATOM 16 O2 U B 718 56.803 64.086 49.380 1.00 53.57 O
ATOM 17 N3 U B 718 55.862 62.046 49.587 1.00 54.44 N
ATOM 18 C4 U B 718 55.290 60.884 49.112 1.00 54.66 C
ATOM 19 O4 U B 718 55.026 59.974 49.906 1.00 54.80 O
ATOM 20 C5 U B 718 55.138 60.836 47.686 1.00 55.18 C
ATOM 21 C6 U B 718 55.563 61.868 46.939 1.00 54.46 C
ATOM 22 P C B 719 60.764 62.859 44.826 1.00 57.43 P
ATOM 23 OP1 C B 719 61.777 63.258 43.833 1.00 58.22 O
ATOM 24 OP2 C B 719 60.460 61.424 45.029 1.00 58.52 O
ATOM 25 O5' C B 719 61.148 63.537 46.220 1.00 57.49 O
TER
Atoms:
OP1: (49.318,74.856,44.421)
OP2: (51.651,74.670,43.353)
C3': (52.186,71.017,46.771)
C1': (51.903,69.591,44.905)
C5': (50.207,72.532,46.193)
O6: (56.076,70.094,40.572)
O4': (50.825,70.529,44.956)
C8: (52.857,71.184,43.192)
C2: (55.074,67.443,42.707)
C6: (55.428,69.506,41.447)
C5: (54.363,70.006,42.252)
C4: (53.780,69.182,43.195)
P: (50.503,74.034,44.049)
C4': (50.757,71.128,46.282)
C2': (52.569,69.628,46.287)
O2': (52.041,68.617,47.130)
N1: (55.721,68.186,41.749)
N2: (55.496,66.164,42.840)
N3: (54.081,67.905,43.479)
N7: (53.774,71.259,42.265)
N9: (52.806,69.961,43.809)
O5': (51.064,73.364,45.381)
O3': (52.270,71.114,48.182)
OP2: (51.651,74.670,43.353)
C3': (52.186,71.017,46.771)
C1': (51.903,69.591,44.905)
C5': (50.207,72.532,46.193)
O6: (56.076,70.094,40.572)
O4': (50.825,70.529,44.956)
C8: (52.857,71.184,43.192)
C2: (55.074,67.443,42.707)
C6: (55.428,69.506,41.447)
C5: (54.363,70.006,42.252)
C4: (53.780,69.182,43.195)
P: (50.503,74.034,44.049)
C4': (50.757,71.128,46.282)
C2': (52.569,69.628,46.287)
O2': (52.041,68.617,47.130)
N1: (55.721,68.186,41.749)
N2: (55.496,66.164,42.840)
N3: (54.081,67.905,43.479)
N7: (53.774,71.259,42.265)
N9: (52.806,69.961,43.809)
O5': (51.064,73.364,45.381)
O3': (52.270,71.114,48.182)
C4: (55.290,60.884,49.112)
N3: (55.862,62.046,49.587)
OP1: (55.957,60.266,41.739)
OP2: (55.233,59.349,44.016)
C2: (56.308,63.113,48.853)
C1': (56.664,64.096,46.656)
C3': (58.190,63.253,45.073)
O5': (56.265,61.616,43.846)
O4': (56.014,64.061,45.395)
C5': (56.426,62.934,43.289)
P: (55.426,60.491,43.096)
C4': (56.999,63.857,44.342)
C2': (58.169,63.976,46.404)
O2': (58.755,65.249,46.249)
N1: (56.155,62.993,47.487)
O4: (55.026,59.974,49.906)
O2: (56.803,64.086,49.380)
C6: (55.563,61.868,46.939)
C5: (55.138,60.836,47.686)
O3': (59.387,63.549,44.379)
N3: (55.862,62.046,49.587)
OP1: (55.957,60.266,41.739)
OP2: (55.233,59.349,44.016)
C2: (56.308,63.113,48.853)
C1': (56.664,64.096,46.656)
C3': (58.190,63.253,45.073)
O5': (56.265,61.616,43.846)
O4': (56.014,64.061,45.395)
C5': (56.426,62.934,43.289)
P: (55.426,60.491,43.096)
C4': (56.999,63.857,44.342)
C2': (58.169,63.976,46.404)
O2': (58.755,65.249,46.249)
N1: (56.155,62.993,47.487)
O4: (55.026,59.974,49.906)
O2: (56.803,64.086,49.380)
C6: (55.563,61.868,46.939)
C5: (55.138,60.836,47.686)
O3': (59.387,63.549,44.379)
Image (generated by PyMOL):