Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD3:A23:A68
Extra
PDB:
ATOM 1 O3' A A 22 0.695 4.286 26.061 1.00 31.52 O
ATOM 2 P G A 23 1.936 3.447 26.636 1.00 35.27 P
ATOM 3 OP1 G A 23 1.377 2.426 27.559 1.00 39.41 O
ATOM 4 OP2 G A 23 2.915 4.425 27.164 1.00 36.58 O
ATOM 5 O5' G A 23 2.525 2.740 25.336 1.00 32.53 O
ATOM 6 C5' G A 23 1.784 1.744 24.647 1.00 33.05 C
ATOM 7 C4' G A 23 2.407 1.411 23.312 1.00 34.77 C
ATOM 8 O4' G A 23 2.550 2.620 22.518 1.00 33.55 O
ATOM 9 C3' G A 23 3.814 0.831 23.355 1.00 33.40 C
ATOM 10 O3' G A 23 3.834 -0.558 23.637 1.00 34.32 O
ATOM 11 C2' G A 23 4.355 1.177 21.975 1.00 30.29 C
ATOM 12 O2' G A 23 3.842 0.283 20.998 1.00 28.87 O
ATOM 13 C1' G A 23 3.731 2.554 21.746 1.00 31.56 C
ATOM 14 N9 G A 23 4.630 3.640 22.175 1.00 31.13 N
ATOM 15 C8 G A 23 4.571 4.327 23.361 1.00 32.63 C
ATOM 16 N7 G A 23 5.501 5.238 23.473 1.00 33.00 N
ATOM 17 C5 G A 23 6.218 5.139 22.291 1.00 30.61 C
ATOM 18 C6 G A 23 7.344 5.875 21.846 1.00 28.68 C
ATOM 19 O6 G A 23 7.948 6.785 22.429 1.00 26.61 O
ATOM 20 N1 G A 23 7.760 5.457 20.586 1.00 28.36 N
ATOM 21 C2 G A 23 7.169 4.464 19.845 1.00 28.95 C
ATOM 22 N2 G A 23 7.725 4.221 18.649 1.00 28.14 N
ATOM 23 N3 G A 23 6.115 3.767 20.249 1.00 29.01 N
ATOM 24 C4 G A 23 5.696 4.157 21.475 1.00 30.33 C
ATOM 25 P C A 24 5.071 -1.206 24.435 1.00 36.67 P
ATOM 26 OP1 C A 24 4.848 -2.671 24.464 1.00 39.74 O
ATOM 27 OP2 C A 24 5.190 -0.479 25.719 1.00 38.30 O
ATOM 28 O5' C A 24 6.320 -0.866 23.504 1.00 23.12 O
TER
ATOM 1 O3' G B 67 10.923 1.393 16.256 1.00 39.99 O
ATOM 2 P U B 68 10.111 0.016 16.163 1.00 33.34 P
ATOM 3 OP1 U B 68 10.632 -0.880 17.223 1.00 27.53 O
ATOM 4 OP2 U B 68 10.182 -0.433 14.750 1.00 37.52 O
ATOM 5 O5' U B 68 8.626 0.464 16.506 1.00 27.06 O
ATOM 6 C5' U B 68 8.270 0.903 17.804 1.00 26.92 C
ATOM 7 C4' U B 68 6.775 0.929 17.963 1.00 26.15 C
ATOM 8 O4' U B 68 6.221 1.954 17.103 1.00 25.59 O
ATOM 9 C3' U B 68 6.054 -0.348 17.549 1.00 25.28 C
ATOM 10 O3' U B 68 6.022 -1.314 18.585 1.00 25.68 O
ATOM 11 C2' U B 68 4.675 0.152 17.141 1.00 23.81 C
ATOM 12 O2' U B 68 3.860 0.348 18.283 1.00 24.82 O
ATOM 13 C1' U B 68 5.002 1.521 16.547 1.00 24.71 C
ATOM 14 N1 U B 68 5.147 1.481 15.072 1.00 23.12 N
ATOM 15 C2 U B 68 4.031 1.209 14.306 1.00 24.41 C
ATOM 16 O2 U B 68 2.934 0.984 14.785 1.00 23.17 O
ATOM 17 N3 U B 68 4.245 1.204 12.948 1.00 26.49 N
ATOM 18 C4 U B 68 5.430 1.447 12.287 1.00 26.78 C
ATOM 19 O4 U B 68 5.455 1.411 11.053 1.00 27.01 O
ATOM 20 C5 U B 68 6.539 1.730 13.147 1.00 26.94 C
ATOM 21 C6 U B 68 6.359 1.744 14.474 1.00 25.30 C
ATOM 22 P G B 69 6.027 -2.888 18.240 1.00 32.34 P
ATOM 23 OP1 G B 69 6.656 -3.582 19.387 1.00 34.80 O
ATOM 24 OP2 G B 69 6.632 -3.040 16.895 1.00 28.13 O
ATOM 25 O5' G B 69 4.478 -3.241 18.178 1.00 31.02 O
TER
ATOM 2 P G A 23 1.936 3.447 26.636 1.00 35.27 P
ATOM 3 OP1 G A 23 1.377 2.426 27.559 1.00 39.41 O
ATOM 4 OP2 G A 23 2.915 4.425 27.164 1.00 36.58 O
ATOM 5 O5' G A 23 2.525 2.740 25.336 1.00 32.53 O
ATOM 6 C5' G A 23 1.784 1.744 24.647 1.00 33.05 C
ATOM 7 C4' G A 23 2.407 1.411 23.312 1.00 34.77 C
ATOM 8 O4' G A 23 2.550 2.620 22.518 1.00 33.55 O
ATOM 9 C3' G A 23 3.814 0.831 23.355 1.00 33.40 C
ATOM 10 O3' G A 23 3.834 -0.558 23.637 1.00 34.32 O
ATOM 11 C2' G A 23 4.355 1.177 21.975 1.00 30.29 C
ATOM 12 O2' G A 23 3.842 0.283 20.998 1.00 28.87 O
ATOM 13 C1' G A 23 3.731 2.554 21.746 1.00 31.56 C
ATOM 14 N9 G A 23 4.630 3.640 22.175 1.00 31.13 N
ATOM 15 C8 G A 23 4.571 4.327 23.361 1.00 32.63 C
ATOM 16 N7 G A 23 5.501 5.238 23.473 1.00 33.00 N
ATOM 17 C5 G A 23 6.218 5.139 22.291 1.00 30.61 C
ATOM 18 C6 G A 23 7.344 5.875 21.846 1.00 28.68 C
ATOM 19 O6 G A 23 7.948 6.785 22.429 1.00 26.61 O
ATOM 20 N1 G A 23 7.760 5.457 20.586 1.00 28.36 N
ATOM 21 C2 G A 23 7.169 4.464 19.845 1.00 28.95 C
ATOM 22 N2 G A 23 7.725 4.221 18.649 1.00 28.14 N
ATOM 23 N3 G A 23 6.115 3.767 20.249 1.00 29.01 N
ATOM 24 C4 G A 23 5.696 4.157 21.475 1.00 30.33 C
ATOM 25 P C A 24 5.071 -1.206 24.435 1.00 36.67 P
ATOM 26 OP1 C A 24 4.848 -2.671 24.464 1.00 39.74 O
ATOM 27 OP2 C A 24 5.190 -0.479 25.719 1.00 38.30 O
ATOM 28 O5' C A 24 6.320 -0.866 23.504 1.00 23.12 O
TER
ATOM 1 O3' G B 67 10.923 1.393 16.256 1.00 39.99 O
ATOM 2 P U B 68 10.111 0.016 16.163 1.00 33.34 P
ATOM 3 OP1 U B 68 10.632 -0.880 17.223 1.00 27.53 O
ATOM 4 OP2 U B 68 10.182 -0.433 14.750 1.00 37.52 O
ATOM 5 O5' U B 68 8.626 0.464 16.506 1.00 27.06 O
ATOM 6 C5' U B 68 8.270 0.903 17.804 1.00 26.92 C
ATOM 7 C4' U B 68 6.775 0.929 17.963 1.00 26.15 C
ATOM 8 O4' U B 68 6.221 1.954 17.103 1.00 25.59 O
ATOM 9 C3' U B 68 6.054 -0.348 17.549 1.00 25.28 C
ATOM 10 O3' U B 68 6.022 -1.314 18.585 1.00 25.68 O
ATOM 11 C2' U B 68 4.675 0.152 17.141 1.00 23.81 C
ATOM 12 O2' U B 68 3.860 0.348 18.283 1.00 24.82 O
ATOM 13 C1' U B 68 5.002 1.521 16.547 1.00 24.71 C
ATOM 14 N1 U B 68 5.147 1.481 15.072 1.00 23.12 N
ATOM 15 C2 U B 68 4.031 1.209 14.306 1.00 24.41 C
ATOM 16 O2 U B 68 2.934 0.984 14.785 1.00 23.17 O
ATOM 17 N3 U B 68 4.245 1.204 12.948 1.00 26.49 N
ATOM 18 C4 U B 68 5.430 1.447 12.287 1.00 26.78 C
ATOM 19 O4 U B 68 5.455 1.411 11.053 1.00 27.01 O
ATOM 20 C5 U B 68 6.539 1.730 13.147 1.00 26.94 C
ATOM 21 C6 U B 68 6.359 1.744 14.474 1.00 25.30 C
ATOM 22 P G B 69 6.027 -2.888 18.240 1.00 32.34 P
ATOM 23 OP1 G B 69 6.656 -3.582 19.387 1.00 34.80 O
ATOM 24 OP2 G B 69 6.632 -3.040 16.895 1.00 28.13 O
ATOM 25 O5' G B 69 4.478 -3.241 18.178 1.00 31.02 O
TER
Atoms:
OP1: (1.377,2.426,27.559)
OP2: (2.915,4.425,27.164)
C3': (3.814,0.831,23.355)
C1': (3.731,2.554,21.746)
C5': (1.784,1.744,24.647)
O6: (7.948,6.785,22.429)
O4': (2.550,2.620,22.518)
C8: (4.571,4.327,23.361)
C2: (7.169,4.464,19.845)
C6: (7.344,5.875,21.846)
C5: (6.218,5.139,22.291)
C4: (5.696,4.157,21.475)
P: (1.936,3.447,26.636)
C4': (2.407,1.411,23.312)
C2': (4.355,1.177,21.975)
O2': (3.842,0.283,20.998)
N1: (7.760,5.457,20.586)
N2: (7.725,4.221,18.649)
N3: (6.115,3.767,20.249)
N7: (5.501,5.238,23.473)
N9: (4.630,3.640,22.175)
O5': (2.525,2.740,25.336)
O3': (3.834,-0.558,23.637)
OP2: (2.915,4.425,27.164)
C3': (3.814,0.831,23.355)
C1': (3.731,2.554,21.746)
C5': (1.784,1.744,24.647)
O6: (7.948,6.785,22.429)
O4': (2.550,2.620,22.518)
C8: (4.571,4.327,23.361)
C2: (7.169,4.464,19.845)
C6: (7.344,5.875,21.846)
C5: (6.218,5.139,22.291)
C4: (5.696,4.157,21.475)
P: (1.936,3.447,26.636)
C4': (2.407,1.411,23.312)
C2': (4.355,1.177,21.975)
O2': (3.842,0.283,20.998)
N1: (7.760,5.457,20.586)
N2: (7.725,4.221,18.649)
N3: (6.115,3.767,20.249)
N7: (5.501,5.238,23.473)
N9: (4.630,3.640,22.175)
O5': (2.525,2.740,25.336)
O3': (3.834,-0.558,23.637)
C4: (5.430,1.447,12.287)
N3: (4.245,1.204,12.948)
OP1: (10.632,-0.880,17.223)
OP2: (10.182,-0.433,14.750)
C2: (4.031,1.209,14.306)
C1': (5.002,1.521,16.547)
C3': (6.054,-0.348,17.549)
O5': (8.626,0.464,16.506)
O4': (6.221,1.954,17.103)
C5': (8.270,0.903,17.804)
P: (10.111,0.016,16.163)
C4': (6.775,0.929,17.963)
C2': (4.675,0.152,17.141)
O2': (3.860,0.348,18.283)
N1: (5.147,1.481,15.072)
O4: (5.455,1.411,11.053)
O2: (2.934,0.984,14.785)
C6: (6.359,1.744,14.474)
C5: (6.539,1.730,13.147)
O3': (6.022,-1.314,18.585)
N3: (4.245,1.204,12.948)
OP1: (10.632,-0.880,17.223)
OP2: (10.182,-0.433,14.750)
C2: (4.031,1.209,14.306)
C1': (5.002,1.521,16.547)
C3': (6.054,-0.348,17.549)
O5': (8.626,0.464,16.506)
O4': (6.221,1.954,17.103)
C5': (8.270,0.903,17.804)
P: (10.111,0.016,16.163)
C4': (6.775,0.929,17.963)
C2': (4.675,0.152,17.141)
O2': (3.860,0.348,18.283)
N1: (5.147,1.481,15.072)
O4: (5.455,1.411,11.053)
O2: (2.934,0.984,14.785)
C6: (6.359,1.744,14.474)
C5: (6.539,1.730,13.147)
O3': (6.022,-1.314,18.585)
Image (generated by PyMOL):