Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A23:A68
Extra
PDB:
ATOM 1 O3' A A 22 -13.111 4.204 25.279 1.00 25.77 O
ATOM 2 P G A 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 3 OP1 G A 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 4 OP2 G A 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 5 O5' G A 23 -11.454 2.492 24.506 1.00 25.90 O
ATOM 6 C5' G A 23 -12.189 1.472 23.847 1.00 24.57 C
ATOM 7 C4' G A 23 -11.521 1.046 22.562 1.00 25.58 C
ATOM 8 O4' G A 23 -11.342 2.198 21.690 1.00 28.39 O
ATOM 9 C3' G A 23 -10.117 0.478 22.689 1.00 23.92 C
ATOM 10 O3' G A 23 -10.089 -0.870 23.115 1.00 23.34 O
ATOM 11 C2' G A 23 -9.567 0.686 21.291 1.00 23.04 C
ATOM 12 O2' G A 23 -10.139 -0.247 20.387 1.00 22.89 O
ATOM 13 C1' G A 23 -10.127 2.069 20.976 1.00 23.65 C
ATOM 14 N9 G A 23 -9.208 3.127 21.428 1.00 23.18 N
ATOM 15 C8 G A 23 -9.274 3.832 22.603 1.00 22.72 C
ATOM 16 N7 G A 23 -8.299 4.686 22.739 1.00 23.21 N
ATOM 17 C5 G A 23 -7.539 4.527 21.590 1.00 24.98 C
ATOM 18 C6 G A 23 -6.354 5.184 21.176 1.00 23.69 C
ATOM 19 O6 G A 23 -5.717 6.067 21.762 1.00 24.97 O
ATOM 20 N1 G A 23 -5.917 4.713 19.944 1.00 22.23 N
ATOM 21 C2 G A 23 -6.533 3.737 19.201 1.00 22.79 C
ATOM 22 N2 G A 23 -5.950 3.427 18.033 1.00 20.70 N
ATOM 23 N3 G A 23 -7.641 3.118 19.575 1.00 22.40 N
ATOM 24 C4 G A 23 -8.083 3.560 20.772 1.00 23.83 C
ATOM 25 P U A 24 -8.882 -1.392 24.038 1.00 27.35 P
ATOM 26 OP1 U A 24 -9.041 -2.861 24.173 1.00 30.07 O
ATOM 27 OP2 U A 24 -8.881 -0.556 25.264 1.00 25.30 O
ATOM 28 O5' U A 24 -7.591 -1.062 23.164 1.00 26.85 O
TER
ATOM 1 O3' G B 67 -2.527 0.098 16.140 1.00 28.05 O
ATOM 2 P U B 68 -3.596 -1.099 16.110 1.00 27.20 P
ATOM 3 OP1 U B 68 -3.331 -1.960 17.292 1.00 26.47 O
ATOM 4 OP2 U B 68 -3.532 -1.705 14.757 1.00 29.20 O
ATOM 5 O5' U B 68 -4.979 -0.337 16.287 1.00 22.98 O
ATOM 6 C5' U B 68 -5.376 0.185 17.544 1.00 22.16 C
ATOM 7 C4' U B 68 -6.874 0.286 17.631 1.00 21.99 C
ATOM 8 O4' U B 68 -7.345 1.294 16.703 1.00 19.99 O
ATOM 9 C3' U B 68 -7.634 -0.973 17.242 1.00 23.24 C
ATOM 10 O3' U B 68 -7.738 -1.898 18.312 1.00 26.11 O
ATOM 11 C2' U B 68 -8.977 -0.437 16.762 1.00 21.80 C
ATOM 12 O2' U B 68 -9.837 -0.178 17.860 1.00 22.41 O
ATOM 13 C1' U B 68 -8.576 0.901 16.140 1.00 22.89 C
ATOM 14 N1 U B 68 -8.416 0.820 14.674 1.00 23.44 N
ATOM 15 C2 U B 68 -9.545 0.622 13.906 1.00 24.57 C
ATOM 16 O2 U B 68 -10.654 0.489 14.392 1.00 26.63 O
ATOM 17 N3 U B 68 -9.327 0.580 12.552 1.00 24.13 N
ATOM 18 C4 U B 68 -8.117 0.725 11.903 1.00 25.96 C
ATOM 19 O4 U B 68 -8.075 0.666 10.673 1.00 27.72 O
ATOM 20 C5 U B 68 -6.996 0.936 12.766 1.00 24.16 C
ATOM 21 C6 U B 68 -7.182 0.981 14.089 1.00 25.04 C
ATOM 22 P G B 69 -7.822 -3.474 18.016 1.00 22.73 P
ATOM 23 OP1 G B 69 -7.299 -4.173 19.214 1.00 26.11 O
ATOM 24 OP2 G B 69 -7.160 -3.707 16.709 1.00 29.48 O
ATOM 25 O5' G B 69 -9.388 -3.722 17.884 1.00 23.27 O
TER
ATOM 2 P G A 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 3 OP1 G A 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 4 OP2 G A 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 5 O5' G A 23 -11.454 2.492 24.506 1.00 25.90 O
ATOM 6 C5' G A 23 -12.189 1.472 23.847 1.00 24.57 C
ATOM 7 C4' G A 23 -11.521 1.046 22.562 1.00 25.58 C
ATOM 8 O4' G A 23 -11.342 2.198 21.690 1.00 28.39 O
ATOM 9 C3' G A 23 -10.117 0.478 22.689 1.00 23.92 C
ATOM 10 O3' G A 23 -10.089 -0.870 23.115 1.00 23.34 O
ATOM 11 C2' G A 23 -9.567 0.686 21.291 1.00 23.04 C
ATOM 12 O2' G A 23 -10.139 -0.247 20.387 1.00 22.89 O
ATOM 13 C1' G A 23 -10.127 2.069 20.976 1.00 23.65 C
ATOM 14 N9 G A 23 -9.208 3.127 21.428 1.00 23.18 N
ATOM 15 C8 G A 23 -9.274 3.832 22.603 1.00 22.72 C
ATOM 16 N7 G A 23 -8.299 4.686 22.739 1.00 23.21 N
ATOM 17 C5 G A 23 -7.539 4.527 21.590 1.00 24.98 C
ATOM 18 C6 G A 23 -6.354 5.184 21.176 1.00 23.69 C
ATOM 19 O6 G A 23 -5.717 6.067 21.762 1.00 24.97 O
ATOM 20 N1 G A 23 -5.917 4.713 19.944 1.00 22.23 N
ATOM 21 C2 G A 23 -6.533 3.737 19.201 1.00 22.79 C
ATOM 22 N2 G A 23 -5.950 3.427 18.033 1.00 20.70 N
ATOM 23 N3 G A 23 -7.641 3.118 19.575 1.00 22.40 N
ATOM 24 C4 G A 23 -8.083 3.560 20.772 1.00 23.83 C
ATOM 25 P U A 24 -8.882 -1.392 24.038 1.00 27.35 P
ATOM 26 OP1 U A 24 -9.041 -2.861 24.173 1.00 30.07 O
ATOM 27 OP2 U A 24 -8.881 -0.556 25.264 1.00 25.30 O
ATOM 28 O5' U A 24 -7.591 -1.062 23.164 1.00 26.85 O
TER
ATOM 1 O3' G B 67 -2.527 0.098 16.140 1.00 28.05 O
ATOM 2 P U B 68 -3.596 -1.099 16.110 1.00 27.20 P
ATOM 3 OP1 U B 68 -3.331 -1.960 17.292 1.00 26.47 O
ATOM 4 OP2 U B 68 -3.532 -1.705 14.757 1.00 29.20 O
ATOM 5 O5' U B 68 -4.979 -0.337 16.287 1.00 22.98 O
ATOM 6 C5' U B 68 -5.376 0.185 17.544 1.00 22.16 C
ATOM 7 C4' U B 68 -6.874 0.286 17.631 1.00 21.99 C
ATOM 8 O4' U B 68 -7.345 1.294 16.703 1.00 19.99 O
ATOM 9 C3' U B 68 -7.634 -0.973 17.242 1.00 23.24 C
ATOM 10 O3' U B 68 -7.738 -1.898 18.312 1.00 26.11 O
ATOM 11 C2' U B 68 -8.977 -0.437 16.762 1.00 21.80 C
ATOM 12 O2' U B 68 -9.837 -0.178 17.860 1.00 22.41 O
ATOM 13 C1' U B 68 -8.576 0.901 16.140 1.00 22.89 C
ATOM 14 N1 U B 68 -8.416 0.820 14.674 1.00 23.44 N
ATOM 15 C2 U B 68 -9.545 0.622 13.906 1.00 24.57 C
ATOM 16 O2 U B 68 -10.654 0.489 14.392 1.00 26.63 O
ATOM 17 N3 U B 68 -9.327 0.580 12.552 1.00 24.13 N
ATOM 18 C4 U B 68 -8.117 0.725 11.903 1.00 25.96 C
ATOM 19 O4 U B 68 -8.075 0.666 10.673 1.00 27.72 O
ATOM 20 C5 U B 68 -6.996 0.936 12.766 1.00 24.16 C
ATOM 21 C6 U B 68 -7.182 0.981 14.089 1.00 25.04 C
ATOM 22 P G B 69 -7.822 -3.474 18.016 1.00 22.73 P
ATOM 23 OP1 G B 69 -7.299 -4.173 19.214 1.00 26.11 O
ATOM 24 OP2 G B 69 -7.160 -3.707 16.709 1.00 29.48 O
ATOM 25 O5' G B 69 -9.388 -3.722 17.884 1.00 23.27 O
TER
Atoms:
OP1: (-12.731,2.166,26.653)
OP2: (-10.941,3.976,26.474)
C3': (-10.117,0.478,22.689)
C1': (-10.127,2.069,20.976)
C5': (-12.189,1.472,23.847)
O6: (-5.717,6.067,21.762)
O4': (-11.342,2.198,21.690)
C8: (-9.274,3.832,22.603)
C2: (-6.533,3.737,19.201)
C6: (-6.354,5.184,21.176)
C5: (-7.539,4.527,21.590)
C4: (-8.083,3.560,20.772)
P: (-12.010,3.173,25.835)
C4': (-11.521,1.046,22.562)
C2': (-9.567,0.686,21.291)
O2': (-10.139,-0.247,20.387)
N1: (-5.917,4.713,19.944)
N2: (-5.950,3.427,18.033)
N3: (-7.641,3.118,19.575)
N7: (-8.299,4.686,22.739)
N9: (-9.208,3.127,21.428)
O5': (-11.454,2.492,24.506)
O3': (-10.089,-0.870,23.115)
OP2: (-10.941,3.976,26.474)
C3': (-10.117,0.478,22.689)
C1': (-10.127,2.069,20.976)
C5': (-12.189,1.472,23.847)
O6: (-5.717,6.067,21.762)
O4': (-11.342,2.198,21.690)
C8: (-9.274,3.832,22.603)
C2: (-6.533,3.737,19.201)
C6: (-6.354,5.184,21.176)
C5: (-7.539,4.527,21.590)
C4: (-8.083,3.560,20.772)
P: (-12.010,3.173,25.835)
C4': (-11.521,1.046,22.562)
C2': (-9.567,0.686,21.291)
O2': (-10.139,-0.247,20.387)
N1: (-5.917,4.713,19.944)
N2: (-5.950,3.427,18.033)
N3: (-7.641,3.118,19.575)
N7: (-8.299,4.686,22.739)
N9: (-9.208,3.127,21.428)
O5': (-11.454,2.492,24.506)
O3': (-10.089,-0.870,23.115)
C4: (-8.117,0.725,11.903)
N3: (-9.327,0.580,12.552)
OP1: (-3.331,-1.960,17.292)
OP2: (-3.532,-1.705,14.757)
C2: (-9.545,0.622,13.906)
C1': (-8.576,0.901,16.140)
C3': (-7.634,-0.973,17.242)
O5': (-4.979,-0.337,16.287)
O4': (-7.345,1.294,16.703)
C5': (-5.376,0.185,17.544)
P: (-3.596,-1.099,16.110)
C4': (-6.874,0.286,17.631)
C2': (-8.977,-0.437,16.762)
O2': (-9.837,-0.178,17.860)
N1: (-8.416,0.820,14.674)
O4: (-8.075,0.666,10.673)
O2: (-10.654,0.489,14.392)
C6: (-7.182,0.981,14.089)
C5: (-6.996,0.936,12.766)
O3': (-7.738,-1.898,18.312)
N3: (-9.327,0.580,12.552)
OP1: (-3.331,-1.960,17.292)
OP2: (-3.532,-1.705,14.757)
C2: (-9.545,0.622,13.906)
C1': (-8.576,0.901,16.140)
C3': (-7.634,-0.973,17.242)
O5': (-4.979,-0.337,16.287)
O4': (-7.345,1.294,16.703)
C5': (-5.376,0.185,17.544)
P: (-3.596,-1.099,16.110)
C4': (-6.874,0.286,17.631)
C2': (-8.977,-0.437,16.762)
O2': (-9.837,-0.178,17.860)
N1: (-8.416,0.820,14.674)
O4: (-8.075,0.666,10.673)
O2: (-10.654,0.489,14.392)
C6: (-7.182,0.981,14.089)
C5: (-6.996,0.936,12.766)
O3': (-7.738,-1.898,18.312)
Image (generated by PyMOL):