Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01278:0505
Extra
PDB:
ATOM 1 O3' A A1277 19.427 129.236 61.423 1.00 35.74 O
ATOM 2 P G A1278 19.353 129.144 63.022 1.00 35.08 P
ATOM 3 OP1 G A1278 20.005 127.862 63.375 1.00 35.63 O
ATOM 4 OP2 G A1278 17.969 129.412 63.479 1.00 35.48 O
ATOM 5 O5' G A1278 20.270 130.348 63.514 1.00 37.43 O
ATOM 6 C5' G A1278 21.676 130.390 63.196 1.00 35.93 C
ATOM 7 C4' G A1278 22.254 131.720 63.599 1.00 34.13 C
ATOM 8 O4' G A1278 21.596 132.765 62.840 1.00 35.77 O
ATOM 9 C3' G A1278 22.005 132.114 65.042 1.00 35.01 C
ATOM 10 O3' G A1278 22.939 131.512 65.924 1.00 34.45 O
ATOM 11 C2' G A1278 22.129 133.628 64.983 1.00 35.31 C
ATOM 12 O2' G A1278 23.466 134.069 64.939 1.00 35.26 O
ATOM 13 C1' G A1278 21.450 133.926 63.644 1.00 35.48 C
ATOM 14 N9 G A1278 20.024 134.196 63.803 1.00 35.17 N
ATOM 15 C8 G A1278 18.996 133.301 63.641 1.00 34.41 C
ATOM 16 N7 G A1278 17.826 133.812 63.909 1.00 35.74 N
ATOM 17 C5 G A1278 18.092 135.132 64.251 1.00 34.94 C
ATOM 18 C6 G A1278 17.213 136.171 64.638 1.00 34.31 C
ATOM 19 O6 G A1278 15.978 136.141 64.732 1.00 35.84 O
ATOM 20 N1 G A1278 17.899 137.343 64.920 1.00 32.00 N
ATOM 21 C2 G A1278 19.254 137.511 64.818 1.00 33.26 C
ATOM 22 N2 G A1278 19.720 138.744 65.121 1.00 30.23 N
ATOM 23 N3 G A1278 20.090 136.551 64.443 1.00 33.18 N
ATOM 24 C4 G A1278 19.443 135.392 64.182 1.00 35.12 C
ATOM 25 P C A1279 22.464 131.040 67.385 1.00 34.72 P
ATOM 26 OP1 C A1279 23.638 130.359 67.983 1.00 36.45 O
ATOM 27 OP2 C A1279 21.172 130.313 67.273 1.00 32.77 O
ATOM 28 O5' C A1279 22.223 132.396 68.182 1.00 31.19 O
TER
ATOM 1 O3' A B 504 22.997 146.137 61.122 1.00 39.69 O
ATOM 2 P U B 505 22.991 145.957 62.718 1.00 39.11 P
ATOM 3 OP1 U B 505 21.786 146.632 63.261 1.00 39.66 O
ATOM 4 OP2 U B 505 24.329 146.336 63.231 1.00 41.55 O
ATOM 5 O5' U B 505 22.814 144.393 62.924 1.00 35.09 O
ATOM 6 C5' U B 505 21.617 143.719 62.507 1.00 33.42 C
ATOM 7 C4' U B 505 21.811 142.226 62.622 1.00 34.05 C
ATOM 8 O4' U B 505 22.923 141.826 61.775 1.00 31.48 O
ATOM 9 C3' U B 505 22.195 141.755 64.017 1.00 32.00 C
ATOM 10 O3' U B 505 21.028 141.478 64.772 1.00 29.91 O
ATOM 11 C2' U B 505 22.963 140.474 63.742 1.00 30.97 C
ATOM 12 O2' U B 505 22.074 139.399 63.552 1.00 31.10 O
ATOM 13 C1' U B 505 23.663 140.807 62.417 1.00 32.52 C
ATOM 14 N1 U B 505 25.067 141.241 62.509 1.00 34.94 N
ATOM 15 C2 U B 505 26.053 140.260 62.645 1.00 36.15 C
ATOM 16 O2 U B 505 25.804 139.070 62.732 1.00 36.45 O
ATOM 17 N3 U B 505 27.342 140.733 62.677 1.00 36.26 N
ATOM 18 C4 U B 505 27.746 142.050 62.594 1.00 37.26 C
ATOM 19 O4 U B 505 28.948 142.310 62.588 1.00 38.32 O
ATOM 20 C5 U B 505 26.678 143.002 62.478 1.00 36.80 C
ATOM 21 C6 U B 505 25.409 142.577 62.443 1.00 36.27 C
ATOM 22 P G B 506 20.795 142.196 66.188 1.00 34.01 P
ATOM 23 OP1 G B 506 19.663 141.477 66.841 1.00 31.83 O
ATOM 24 OP2 G B 506 20.727 143.672 66.003 1.00 31.57 O
ATOM 25 O5' G B 506 22.118 141.877 67.010 1.00 34.18 O
TER
ATOM 2 P G A1278 19.353 129.144 63.022 1.00 35.08 P
ATOM 3 OP1 G A1278 20.005 127.862 63.375 1.00 35.63 O
ATOM 4 OP2 G A1278 17.969 129.412 63.479 1.00 35.48 O
ATOM 5 O5' G A1278 20.270 130.348 63.514 1.00 37.43 O
ATOM 6 C5' G A1278 21.676 130.390 63.196 1.00 35.93 C
ATOM 7 C4' G A1278 22.254 131.720 63.599 1.00 34.13 C
ATOM 8 O4' G A1278 21.596 132.765 62.840 1.00 35.77 O
ATOM 9 C3' G A1278 22.005 132.114 65.042 1.00 35.01 C
ATOM 10 O3' G A1278 22.939 131.512 65.924 1.00 34.45 O
ATOM 11 C2' G A1278 22.129 133.628 64.983 1.00 35.31 C
ATOM 12 O2' G A1278 23.466 134.069 64.939 1.00 35.26 O
ATOM 13 C1' G A1278 21.450 133.926 63.644 1.00 35.48 C
ATOM 14 N9 G A1278 20.024 134.196 63.803 1.00 35.17 N
ATOM 15 C8 G A1278 18.996 133.301 63.641 1.00 34.41 C
ATOM 16 N7 G A1278 17.826 133.812 63.909 1.00 35.74 N
ATOM 17 C5 G A1278 18.092 135.132 64.251 1.00 34.94 C
ATOM 18 C6 G A1278 17.213 136.171 64.638 1.00 34.31 C
ATOM 19 O6 G A1278 15.978 136.141 64.732 1.00 35.84 O
ATOM 20 N1 G A1278 17.899 137.343 64.920 1.00 32.00 N
ATOM 21 C2 G A1278 19.254 137.511 64.818 1.00 33.26 C
ATOM 22 N2 G A1278 19.720 138.744 65.121 1.00 30.23 N
ATOM 23 N3 G A1278 20.090 136.551 64.443 1.00 33.18 N
ATOM 24 C4 G A1278 19.443 135.392 64.182 1.00 35.12 C
ATOM 25 P C A1279 22.464 131.040 67.385 1.00 34.72 P
ATOM 26 OP1 C A1279 23.638 130.359 67.983 1.00 36.45 O
ATOM 27 OP2 C A1279 21.172 130.313 67.273 1.00 32.77 O
ATOM 28 O5' C A1279 22.223 132.396 68.182 1.00 31.19 O
TER
ATOM 1 O3' A B 504 22.997 146.137 61.122 1.00 39.69 O
ATOM 2 P U B 505 22.991 145.957 62.718 1.00 39.11 P
ATOM 3 OP1 U B 505 21.786 146.632 63.261 1.00 39.66 O
ATOM 4 OP2 U B 505 24.329 146.336 63.231 1.00 41.55 O
ATOM 5 O5' U B 505 22.814 144.393 62.924 1.00 35.09 O
ATOM 6 C5' U B 505 21.617 143.719 62.507 1.00 33.42 C
ATOM 7 C4' U B 505 21.811 142.226 62.622 1.00 34.05 C
ATOM 8 O4' U B 505 22.923 141.826 61.775 1.00 31.48 O
ATOM 9 C3' U B 505 22.195 141.755 64.017 1.00 32.00 C
ATOM 10 O3' U B 505 21.028 141.478 64.772 1.00 29.91 O
ATOM 11 C2' U B 505 22.963 140.474 63.742 1.00 30.97 C
ATOM 12 O2' U B 505 22.074 139.399 63.552 1.00 31.10 O
ATOM 13 C1' U B 505 23.663 140.807 62.417 1.00 32.52 C
ATOM 14 N1 U B 505 25.067 141.241 62.509 1.00 34.94 N
ATOM 15 C2 U B 505 26.053 140.260 62.645 1.00 36.15 C
ATOM 16 O2 U B 505 25.804 139.070 62.732 1.00 36.45 O
ATOM 17 N3 U B 505 27.342 140.733 62.677 1.00 36.26 N
ATOM 18 C4 U B 505 27.746 142.050 62.594 1.00 37.26 C
ATOM 19 O4 U B 505 28.948 142.310 62.588 1.00 38.32 O
ATOM 20 C5 U B 505 26.678 143.002 62.478 1.00 36.80 C
ATOM 21 C6 U B 505 25.409 142.577 62.443 1.00 36.27 C
ATOM 22 P G B 506 20.795 142.196 66.188 1.00 34.01 P
ATOM 23 OP1 G B 506 19.663 141.477 66.841 1.00 31.83 O
ATOM 24 OP2 G B 506 20.727 143.672 66.003 1.00 31.57 O
ATOM 25 O5' G B 506 22.118 141.877 67.010 1.00 34.18 O
TER
Atoms:
OP1: (20.005,127.862,63.375)
OP2: (17.969,129.412,63.479)
C3': (22.005,132.114,65.042)
C1': (21.450,133.926,63.644)
C5': (21.676,130.390,63.196)
O6: (15.978,136.141,64.732)
O4': (21.596,132.765,62.840)
C8: (18.996,133.301,63.641)
C2: (19.254,137.511,64.818)
C6: (17.213,136.171,64.638)
C5: (18.092,135.132,64.251)
C4: (19.443,135.392,64.182)
P: (19.353,129.144,63.022)
C4': (22.254,131.720,63.599)
C2': (22.129,133.628,64.983)
O2': (23.466,134.069,64.939)
N1: (17.899,137.343,64.920)
N2: (19.720,138.744,65.121)
N3: (20.090,136.551,64.443)
N7: (17.826,133.812,63.909)
N9: (20.024,134.196,63.803)
O5': (20.270,130.348,63.514)
O3': (22.939,131.512,65.924)
OP2: (17.969,129.412,63.479)
C3': (22.005,132.114,65.042)
C1': (21.450,133.926,63.644)
C5': (21.676,130.390,63.196)
O6: (15.978,136.141,64.732)
O4': (21.596,132.765,62.840)
C8: (18.996,133.301,63.641)
C2: (19.254,137.511,64.818)
C6: (17.213,136.171,64.638)
C5: (18.092,135.132,64.251)
C4: (19.443,135.392,64.182)
P: (19.353,129.144,63.022)
C4': (22.254,131.720,63.599)
C2': (22.129,133.628,64.983)
O2': (23.466,134.069,64.939)
N1: (17.899,137.343,64.920)
N2: (19.720,138.744,65.121)
N3: (20.090,136.551,64.443)
N7: (17.826,133.812,63.909)
N9: (20.024,134.196,63.803)
O5': (20.270,130.348,63.514)
O3': (22.939,131.512,65.924)
C4: (27.746,142.050,62.594)
N3: (27.342,140.733,62.677)
OP1: (21.786,146.632,63.261)
OP2: (24.329,146.336,63.231)
C2: (26.053,140.260,62.645)
C1': (23.663,140.807,62.417)
C3': (22.195,141.755,64.017)
O5': (22.814,144.393,62.924)
O4': (22.923,141.826,61.775)
C5': (21.617,143.719,62.507)
P: (22.991,145.957,62.718)
C4': (21.811,142.226,62.622)
C2': (22.963,140.474,63.742)
O2': (22.074,139.399,63.552)
N1: (25.067,141.241,62.509)
O4: (28.948,142.310,62.588)
O2: (25.804,139.070,62.732)
C6: (25.409,142.577,62.443)
C5: (26.678,143.002,62.478)
O3': (21.028,141.478,64.772)
N3: (27.342,140.733,62.677)
OP1: (21.786,146.632,63.261)
OP2: (24.329,146.336,63.231)
C2: (26.053,140.260,62.645)
C1': (23.663,140.807,62.417)
C3': (22.195,141.755,64.017)
O5': (22.814,144.393,62.924)
O4': (22.923,141.826,61.775)
C5': (21.617,143.719,62.507)
P: (22.991,145.957,62.718)
C4': (21.811,142.226,62.622)
C2': (22.963,140.474,63.742)
O2': (22.074,139.399,63.552)
N1: (25.067,141.241,62.509)
O4: (28.948,142.310,62.588)
O2: (25.804,139.070,62.732)
C6: (25.409,142.577,62.443)
C5: (26.678,143.002,62.478)
O3': (21.028,141.478,64.772)
Image (generated by PyMOL):