Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A32:A19
Extra
PDB:
ATOM 1 O3' G A 31 7.945 -2.183 35.783 1.00108.33 O
ATOM 2 P A A 32 8.247 -1.946 37.325 1.00114.31 P
ATOM 3 OP1 A A 32 9.717 -2.120 37.461 1.00114.51 O
ATOM 4 OP2 A A 32 7.328 -2.834 38.085 1.00114.52 O
ATOM 5 O5' A A 32 7.827 -0.424 37.623 1.00113.77 O
ATOM 6 C5' A A 32 6.520 0.035 37.328 1.00113.99 C
ATOM 7 C4' A A 32 6.049 0.987 38.410 1.00114.30 C
ATOM 8 O4' A A 32 4.724 1.441 38.058 1.00113.20 O
ATOM 9 C3' A A 32 5.942 0.357 39.798 1.00115.14 C
ATOM 10 O3' A A 32 6.976 0.835 40.687 1.00117.97 O
ATOM 11 C2' A A 32 4.501 0.627 40.271 1.00114.09 C
ATOM 12 O2' A A 32 4.404 1.179 41.580 1.00113.90 O
ATOM 13 C1' A A 32 3.932 1.583 39.217 1.00112.18 C
ATOM 14 N9 A A 32 2.558 1.345 38.788 1.00109.24 N
ATOM 15 C8 A A 32 1.549 2.271 38.750 1.00108.97 C
ATOM 16 N7 A A 32 0.409 1.808 38.293 1.00108.23 N
ATOM 17 C5 A A 32 0.697 0.487 38.004 1.00107.17 C
ATOM 18 C6 A A 32 -0.100 -0.552 37.495 1.00105.47 C
ATOM 19 N6 A A 32 -1.380 -0.380 37.189 1.00105.06 N
ATOM 20 N1 A A 32 0.468 -1.759 37.320 1.00104.81 N
ATOM 21 C2 A A 32 1.765 -1.903 37.647 1.00106.02 C
ATOM 22 N3 A A 32 2.623 -1.001 38.140 1.00106.02 N
ATOM 23 C4 A A 32 2.017 0.185 38.299 1.00107.32 C
ATOM 24 P C A 33 7.175 2.338 41.219 1.00120.97 P
ATOM 25 OP1 C A 33 7.569 2.250 42.644 1.00120.65 O
ATOM 26 OP2 C A 33 6.016 3.180 40.844 1.00121.19 O
ATOM 27 O5' C A 33 8.425 2.828 40.338 1.00122.24 O
TER
ATOM 1 O3' U B 18 -3.785 3.837 32.545 1.00123.48 O
ATOM 2 P A B 19 -4.671 2.768 33.320 1.00124.20 P
ATOM 3 OP1 A B 19 -6.011 2.798 32.693 1.00124.17 O
ATOM 4 OP2 A B 19 -4.552 3.014 34.780 1.00124.00 O
ATOM 5 O5' A B 19 -3.947 1.378 32.997 1.00123.36 O
ATOM 6 C5' A B 19 -4.725 0.293 32.510 1.00123.08 C
ATOM 7 C4' A B 19 -4.010 -1.041 32.618 1.00122.74 C
ATOM 8 O4' A B 19 -2.569 -0.931 32.456 1.00122.76 O
ATOM 9 C3' A B 19 -4.209 -1.762 33.947 1.00122.22 C
ATOM 10 O3' A B 19 -4.303 -3.140 33.731 1.00122.41 O
ATOM 11 C2' A B 19 -2.943 -1.492 34.733 1.00122.26 C
ATOM 12 O2' A B 19 -2.671 -2.520 35.684 1.00121.35 O
ATOM 13 C1' A B 19 -1.912 -1.430 33.602 1.00121.66 C
ATOM 14 N9 A B 19 -0.828 -0.521 33.903 1.00120.33 N
ATOM 15 C8 A B 19 -0.962 0.795 34.232 1.00120.21 C
ATOM 16 N7 A B 19 0.173 1.402 34.476 1.00120.19 N
ATOM 17 C5 A B 19 1.108 0.401 34.293 1.00119.66 C
ATOM 18 C6 A B 19 2.508 0.410 34.405 1.00118.98 C
ATOM 19 N6 A B 19 3.183 1.511 34.733 1.00118.29 N
ATOM 20 N1 A B 19 3.162 -0.748 34.153 1.00118.47 N
ATOM 21 C2 A B 19 2.440 -1.834 33.819 1.00118.95 C
ATOM 22 N3 A B 19 1.116 -1.968 33.680 1.00118.99 N
ATOM 23 C4 A B 19 0.509 -0.798 33.938 1.00119.74 C
ATOM 24 P G B 20 -5.586 -3.685 32.978 1.00124.13 P
ATOM 25 OP1 G B 20 -6.657 -2.666 33.167 1.00123.78 O
ATOM 26 OP2 G B 20 -5.799 -5.086 33.421 1.00123.78 O
ATOM 27 O5' G B 20 -5.094 -3.697 31.444 1.00122.58 O
TER
ATOM 2 P A A 32 8.247 -1.946 37.325 1.00114.31 P
ATOM 3 OP1 A A 32 9.717 -2.120 37.461 1.00114.51 O
ATOM 4 OP2 A A 32 7.328 -2.834 38.085 1.00114.52 O
ATOM 5 O5' A A 32 7.827 -0.424 37.623 1.00113.77 O
ATOM 6 C5' A A 32 6.520 0.035 37.328 1.00113.99 C
ATOM 7 C4' A A 32 6.049 0.987 38.410 1.00114.30 C
ATOM 8 O4' A A 32 4.724 1.441 38.058 1.00113.20 O
ATOM 9 C3' A A 32 5.942 0.357 39.798 1.00115.14 C
ATOM 10 O3' A A 32 6.976 0.835 40.687 1.00117.97 O
ATOM 11 C2' A A 32 4.501 0.627 40.271 1.00114.09 C
ATOM 12 O2' A A 32 4.404 1.179 41.580 1.00113.90 O
ATOM 13 C1' A A 32 3.932 1.583 39.217 1.00112.18 C
ATOM 14 N9 A A 32 2.558 1.345 38.788 1.00109.24 N
ATOM 15 C8 A A 32 1.549 2.271 38.750 1.00108.97 C
ATOM 16 N7 A A 32 0.409 1.808 38.293 1.00108.23 N
ATOM 17 C5 A A 32 0.697 0.487 38.004 1.00107.17 C
ATOM 18 C6 A A 32 -0.100 -0.552 37.495 1.00105.47 C
ATOM 19 N6 A A 32 -1.380 -0.380 37.189 1.00105.06 N
ATOM 20 N1 A A 32 0.468 -1.759 37.320 1.00104.81 N
ATOM 21 C2 A A 32 1.765 -1.903 37.647 1.00106.02 C
ATOM 22 N3 A A 32 2.623 -1.001 38.140 1.00106.02 N
ATOM 23 C4 A A 32 2.017 0.185 38.299 1.00107.32 C
ATOM 24 P C A 33 7.175 2.338 41.219 1.00120.97 P
ATOM 25 OP1 C A 33 7.569 2.250 42.644 1.00120.65 O
ATOM 26 OP2 C A 33 6.016 3.180 40.844 1.00121.19 O
ATOM 27 O5' C A 33 8.425 2.828 40.338 1.00122.24 O
TER
ATOM 1 O3' U B 18 -3.785 3.837 32.545 1.00123.48 O
ATOM 2 P A B 19 -4.671 2.768 33.320 1.00124.20 P
ATOM 3 OP1 A B 19 -6.011 2.798 32.693 1.00124.17 O
ATOM 4 OP2 A B 19 -4.552 3.014 34.780 1.00124.00 O
ATOM 5 O5' A B 19 -3.947 1.378 32.997 1.00123.36 O
ATOM 6 C5' A B 19 -4.725 0.293 32.510 1.00123.08 C
ATOM 7 C4' A B 19 -4.010 -1.041 32.618 1.00122.74 C
ATOM 8 O4' A B 19 -2.569 -0.931 32.456 1.00122.76 O
ATOM 9 C3' A B 19 -4.209 -1.762 33.947 1.00122.22 C
ATOM 10 O3' A B 19 -4.303 -3.140 33.731 1.00122.41 O
ATOM 11 C2' A B 19 -2.943 -1.492 34.733 1.00122.26 C
ATOM 12 O2' A B 19 -2.671 -2.520 35.684 1.00121.35 O
ATOM 13 C1' A B 19 -1.912 -1.430 33.602 1.00121.66 C
ATOM 14 N9 A B 19 -0.828 -0.521 33.903 1.00120.33 N
ATOM 15 C8 A B 19 -0.962 0.795 34.232 1.00120.21 C
ATOM 16 N7 A B 19 0.173 1.402 34.476 1.00120.19 N
ATOM 17 C5 A B 19 1.108 0.401 34.293 1.00119.66 C
ATOM 18 C6 A B 19 2.508 0.410 34.405 1.00118.98 C
ATOM 19 N6 A B 19 3.183 1.511 34.733 1.00118.29 N
ATOM 20 N1 A B 19 3.162 -0.748 34.153 1.00118.47 N
ATOM 21 C2 A B 19 2.440 -1.834 33.819 1.00118.95 C
ATOM 22 N3 A B 19 1.116 -1.968 33.680 1.00118.99 N
ATOM 23 C4 A B 19 0.509 -0.798 33.938 1.00119.74 C
ATOM 24 P G B 20 -5.586 -3.685 32.978 1.00124.13 P
ATOM 25 OP1 G B 20 -6.657 -2.666 33.167 1.00123.78 O
ATOM 26 OP2 G B 20 -5.799 -5.086 33.421 1.00123.78 O
ATOM 27 O5' G B 20 -5.094 -3.697 31.444 1.00122.58 O
TER
Atoms:
OP1: (9.717,-2.120,37.461)
OP2: (7.328,-2.834,38.085)
C3': (5.942,0.357,39.798)
C1': (3.932,1.583,39.217)
C5': (6.520,0.035,37.328)
O4': (4.724,1.441,38.058)
C8: (1.549,2.271,38.750)
O2': (4.404,1.179,41.580)
C6: (-0.100,-0.552,37.495)
C5: (0.697,0.487,38.004)
C4: (2.017,0.185,38.299)
P: (8.247,-1.946,37.325)
C4': (6.049,0.987,38.410)
C2': (4.501,0.627,40.271)
C2: (1.765,-1.903,37.647)
N1: (0.468,-1.759,37.320)
N3: (2.623,-1.001,38.140)
N6: (-1.380,-0.380,37.189)
N7: (0.409,1.808,38.293)
N9: (2.558,1.345,38.788)
O5': (7.827,-0.424,37.623)
O3': (6.976,0.835,40.687)
OP2: (7.328,-2.834,38.085)
C3': (5.942,0.357,39.798)
C1': (3.932,1.583,39.217)
C5': (6.520,0.035,37.328)
O4': (4.724,1.441,38.058)
C8: (1.549,2.271,38.750)
O2': (4.404,1.179,41.580)
C6: (-0.100,-0.552,37.495)
C5: (0.697,0.487,38.004)
C4: (2.017,0.185,38.299)
P: (8.247,-1.946,37.325)
C4': (6.049,0.987,38.410)
C2': (4.501,0.627,40.271)
C2: (1.765,-1.903,37.647)
N1: (0.468,-1.759,37.320)
N3: (2.623,-1.001,38.140)
N6: (-1.380,-0.380,37.189)
N7: (0.409,1.808,38.293)
N9: (2.558,1.345,38.788)
O5': (7.827,-0.424,37.623)
O3': (6.976,0.835,40.687)
OP1: (-6.011,2.798,32.693)
OP2: (-4.552,3.014,34.780)
C3': (-4.209,-1.762,33.947)
C1': (-1.912,-1.430,33.602)
C5': (-4.725,0.293,32.510)
O4': (-2.569,-0.931,32.456)
C8: (-0.962,0.795,34.232)
O2': (-2.671,-2.520,35.684)
C6: (2.508,0.410,34.405)
C5: (1.108,0.401,34.293)
C4: (0.509,-0.798,33.938)
P: (-4.671,2.768,33.320)
C4': (-4.010,-1.041,32.618)
C2': (-2.943,-1.492,34.733)
C2: (2.440,-1.834,33.819)
N1: (3.162,-0.748,34.153)
N3: (1.116,-1.968,33.680)
N6: (3.183,1.511,34.733)
N7: (0.173,1.402,34.476)
N9: (-0.828,-0.521,33.903)
O5': (-3.947,1.378,32.997)
O3': (-4.303,-3.140,33.731)
OP2: (-4.552,3.014,34.780)
C3': (-4.209,-1.762,33.947)
C1': (-1.912,-1.430,33.602)
C5': (-4.725,0.293,32.510)
O4': (-2.569,-0.931,32.456)
C8: (-0.962,0.795,34.232)
O2': (-2.671,-2.520,35.684)
C6: (2.508,0.410,34.405)
C5: (1.108,0.401,34.293)
C4: (0.509,-0.798,33.938)
P: (-4.671,2.768,33.320)
C4': (-4.010,-1.041,32.618)
C2': (-2.943,-1.492,34.733)
C2: (2.440,-1.834,33.819)
N1: (3.162,-0.748,34.153)
N3: (1.116,-1.968,33.680)
N6: (3.183,1.511,34.733)
N7: (0.173,1.402,34.476)
N9: (-0.828,-0.521,33.903)
O5': (-3.947,1.378,32.997)
O3': (-4.303,-3.140,33.731)
Image (generated by PyMOL):