Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBR:F4:C8
Extra
PDB:
ATOM 1 O3' A A 3 34.419 2.450 -0.914 1.00 52.62 O
ATOM 2 P C A 4 35.152 3.388 -1.990 1.00 54.46 P
ATOM 3 OP1 C A 4 36.471 3.760 -1.416 1.00 55.15 O
ATOM 4 OP2 C A 4 34.211 4.454 -2.402 1.00 56.02 O
ATOM 5 O5' C A 4 35.394 2.428 -3.239 1.00 55.77 O
ATOM 6 C5' C A 4 36.453 1.473 -3.231 1.00 55.93 C
ATOM 7 C4' C A 4 36.312 0.516 -4.388 1.00 55.65 C
ATOM 8 O4' C A 4 34.960 -0.012 -4.446 1.00 59.93 O
ATOM 9 C3' C A 4 36.485 1.117 -5.768 1.00 56.72 C
ATOM 10 O3' C A 4 37.848 1.342 -6.074 1.00 56.69 O
ATOM 11 C2' C A 4 35.831 0.067 -6.660 1.00 57.29 C
ATOM 12 O2' C A 4 36.629 -1.056 -6.954 1.00 60.29 O
ATOM 13 C1' C A 4 34.657 -0.376 -5.790 1.00 59.02 C
ATOM 14 N1 C A 4 33.386 0.250 -6.203 1.00 59.89 N
ATOM 15 C2 C A 4 32.756 -0.223 -7.371 1.00 59.24 C
ATOM 16 O2 C A 4 33.293 -1.133 -8.023 1.00 59.99 O
ATOM 17 N3 C A 4 31.586 0.324 -7.756 1.00 58.55 N
ATOM 18 C4 C A 4 31.041 1.307 -7.037 1.00 56.33 C
ATOM 19 N4 C A 4 29.880 1.811 -7.457 1.00 54.42 N
ATOM 20 C5 C A 4 31.661 1.814 -5.855 1.00 56.61 C
ATOM 21 C6 C A 4 32.820 1.263 -5.478 1.00 57.72 C
ATOM 22 P C A 5 38.284 2.744 -6.716 1.00 54.81 P
ATOM 23 OP1 C A 5 39.757 2.722 -6.881 1.00 53.96 O
ATOM 24 OP2 C A 5 37.653 3.833 -5.922 1.00 55.74 O
ATOM 25 O5' C A 5 37.598 2.719 -8.152 1.00 55.49 O
TER
ATOM 1 O3' U B 7 24.018 7.682 -10.373 1.00 37.99 O
ATOM 2 P C B 8 23.134 6.408 -9.943 1.00 44.14 P
ATOM 3 OP1 C B 8 22.351 6.040 -11.153 1.00 43.42 O
ATOM 4 OP2 C B 8 22.429 6.682 -8.661 1.00 37.47 O
ATOM 5 O5' C B 8 24.192 5.249 -9.669 1.00 41.50 O
ATOM 6 C5' C B 8 25.093 4.824 -10.684 1.00 46.15 C
ATOM 7 C4' C B 8 26.103 3.862 -10.111 1.00 47.64 C
ATOM 8 O4' C B 8 27.057 4.594 -9.301 1.00 48.16 O
ATOM 9 C3' C B 8 25.533 2.808 -9.176 1.00 51.43 C
ATOM 10 O3' C B 8 25.070 1.692 -9.928 1.00 54.90 O
ATOM 11 C2' C B 8 26.735 2.454 -8.310 1.00 49.42 C
ATOM 12 O2' C B 8 27.593 1.520 -8.932 1.00 51.40 O
ATOM 13 C1' C B 8 27.425 3.814 -8.174 1.00 46.89 C
ATOM 14 N1 C B 8 27.088 4.567 -6.947 1.00 43.37 N
ATOM 15 C2 C B 8 27.980 4.527 -5.851 1.00 41.94 C
ATOM 16 O2 C B 8 29.010 3.854 -5.934 1.00 42.37 O
ATOM 17 N3 C B 8 27.684 5.226 -4.733 1.00 39.78 N
ATOM 18 C4 C B 8 26.561 5.938 -4.672 1.00 36.87 C
ATOM 19 N4 C B 8 26.313 6.603 -3.551 1.00 34.49 N
ATOM 20 C5 C B 8 25.640 5.995 -5.763 1.00 36.89 C
ATOM 21 C6 C B 8 25.939 5.302 -6.866 1.00 36.14 C
ATOM 22 P A B 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 23 OP1 A B 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 24 OP2 A B 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 25 O5' A B 9 22.931 1.627 -8.500 1.00 55.99 O
TER
ATOM 2 P C A 4 35.152 3.388 -1.990 1.00 54.46 P
ATOM 3 OP1 C A 4 36.471 3.760 -1.416 1.00 55.15 O
ATOM 4 OP2 C A 4 34.211 4.454 -2.402 1.00 56.02 O
ATOM 5 O5' C A 4 35.394 2.428 -3.239 1.00 55.77 O
ATOM 6 C5' C A 4 36.453 1.473 -3.231 1.00 55.93 C
ATOM 7 C4' C A 4 36.312 0.516 -4.388 1.00 55.65 C
ATOM 8 O4' C A 4 34.960 -0.012 -4.446 1.00 59.93 O
ATOM 9 C3' C A 4 36.485 1.117 -5.768 1.00 56.72 C
ATOM 10 O3' C A 4 37.848 1.342 -6.074 1.00 56.69 O
ATOM 11 C2' C A 4 35.831 0.067 -6.660 1.00 57.29 C
ATOM 12 O2' C A 4 36.629 -1.056 -6.954 1.00 60.29 O
ATOM 13 C1' C A 4 34.657 -0.376 -5.790 1.00 59.02 C
ATOM 14 N1 C A 4 33.386 0.250 -6.203 1.00 59.89 N
ATOM 15 C2 C A 4 32.756 -0.223 -7.371 1.00 59.24 C
ATOM 16 O2 C A 4 33.293 -1.133 -8.023 1.00 59.99 O
ATOM 17 N3 C A 4 31.586 0.324 -7.756 1.00 58.55 N
ATOM 18 C4 C A 4 31.041 1.307 -7.037 1.00 56.33 C
ATOM 19 N4 C A 4 29.880 1.811 -7.457 1.00 54.42 N
ATOM 20 C5 C A 4 31.661 1.814 -5.855 1.00 56.61 C
ATOM 21 C6 C A 4 32.820 1.263 -5.478 1.00 57.72 C
ATOM 22 P C A 5 38.284 2.744 -6.716 1.00 54.81 P
ATOM 23 OP1 C A 5 39.757 2.722 -6.881 1.00 53.96 O
ATOM 24 OP2 C A 5 37.653 3.833 -5.922 1.00 55.74 O
ATOM 25 O5' C A 5 37.598 2.719 -8.152 1.00 55.49 O
TER
ATOM 1 O3' U B 7 24.018 7.682 -10.373 1.00 37.99 O
ATOM 2 P C B 8 23.134 6.408 -9.943 1.00 44.14 P
ATOM 3 OP1 C B 8 22.351 6.040 -11.153 1.00 43.42 O
ATOM 4 OP2 C B 8 22.429 6.682 -8.661 1.00 37.47 O
ATOM 5 O5' C B 8 24.192 5.249 -9.669 1.00 41.50 O
ATOM 6 C5' C B 8 25.093 4.824 -10.684 1.00 46.15 C
ATOM 7 C4' C B 8 26.103 3.862 -10.111 1.00 47.64 C
ATOM 8 O4' C B 8 27.057 4.594 -9.301 1.00 48.16 O
ATOM 9 C3' C B 8 25.533 2.808 -9.176 1.00 51.43 C
ATOM 10 O3' C B 8 25.070 1.692 -9.928 1.00 54.90 O
ATOM 11 C2' C B 8 26.735 2.454 -8.310 1.00 49.42 C
ATOM 12 O2' C B 8 27.593 1.520 -8.932 1.00 51.40 O
ATOM 13 C1' C B 8 27.425 3.814 -8.174 1.00 46.89 C
ATOM 14 N1 C B 8 27.088 4.567 -6.947 1.00 43.37 N
ATOM 15 C2 C B 8 27.980 4.527 -5.851 1.00 41.94 C
ATOM 16 O2 C B 8 29.010 3.854 -5.934 1.00 42.37 O
ATOM 17 N3 C B 8 27.684 5.226 -4.733 1.00 39.78 N
ATOM 18 C4 C B 8 26.561 5.938 -4.672 1.00 36.87 C
ATOM 19 N4 C B 8 26.313 6.603 -3.551 1.00 34.49 N
ATOM 20 C5 C B 8 25.640 5.995 -5.763 1.00 36.89 C
ATOM 21 C6 C B 8 25.939 5.302 -6.866 1.00 36.14 C
ATOM 22 P A B 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 23 OP1 A B 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 24 OP2 A B 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 25 O5' A B 9 22.931 1.627 -8.500 1.00 55.99 O
TER
Atoms:
C2: (32.756,-0.223,-7.371)
OP1: (36.471,3.760,-1.416)
OP2: (34.211,4.454,-2.402)
C4: (31.041,1.307,-7.037)
O5': (35.394,2.428,-3.239)
C3': (36.485,1.117,-5.768)
C1': (34.657,-0.376,-5.790)
O4': (34.960,-0.012,-4.446)
C5': (36.453,1.473,-3.231)
P: (35.152,3.388,-1.990)
O2: (33.293,-1.133,-8.023)
C4': (36.312,0.516,-4.388)
C2': (35.831,0.067,-6.660)
O2': (36.629,-1.056,-6.954)
N1: (33.386,0.250,-6.203)
N3: (31.586,0.324,-7.756)
N4: (29.880,1.811,-7.457)
C6: (32.820,1.263,-5.478)
C5: (31.661,1.814,-5.855)
O3': (37.848,1.342,-6.074)
OP1: (36.471,3.760,-1.416)
OP2: (34.211,4.454,-2.402)
C4: (31.041,1.307,-7.037)
O5': (35.394,2.428,-3.239)
C3': (36.485,1.117,-5.768)
C1': (34.657,-0.376,-5.790)
O4': (34.960,-0.012,-4.446)
C5': (36.453,1.473,-3.231)
P: (35.152,3.388,-1.990)
O2: (33.293,-1.133,-8.023)
C4': (36.312,0.516,-4.388)
C2': (35.831,0.067,-6.660)
O2': (36.629,-1.056,-6.954)
N1: (33.386,0.250,-6.203)
N3: (31.586,0.324,-7.756)
N4: (29.880,1.811,-7.457)
C6: (32.820,1.263,-5.478)
C5: (31.661,1.814,-5.855)
O3': (37.848,1.342,-6.074)
C2: (27.980,4.527,-5.851)
OP1: (22.351,6.040,-11.153)
OP2: (22.429,6.682,-8.661)
C4: (26.561,5.938,-4.672)
O5': (24.192,5.249,-9.669)
C3': (25.533,2.808,-9.176)
C1': (27.425,3.814,-8.174)
O4': (27.057,4.594,-9.301)
C5': (25.093,4.824,-10.684)
P: (23.134,6.408,-9.943)
O2: (29.010,3.854,-5.934)
C4': (26.103,3.862,-10.111)
C2': (26.735,2.454,-8.310)
O2': (27.593,1.520,-8.932)
N1: (27.088,4.567,-6.947)
N3: (27.684,5.226,-4.733)
N4: (26.313,6.603,-3.551)
C6: (25.939,5.302,-6.866)
C5: (25.640,5.995,-5.763)
O3': (25.070,1.692,-9.928)
OP1: (22.351,6.040,-11.153)
OP2: (22.429,6.682,-8.661)
C4: (26.561,5.938,-4.672)
O5': (24.192,5.249,-9.669)
C3': (25.533,2.808,-9.176)
C1': (27.425,3.814,-8.174)
O4': (27.057,4.594,-9.301)
C5': (25.093,4.824,-10.684)
P: (23.134,6.408,-9.943)
O2: (29.010,3.854,-5.934)
C4': (26.103,3.862,-10.111)
C2': (26.735,2.454,-8.310)
O2': (27.593,1.520,-8.932)
N1: (27.088,4.567,-6.947)
N3: (27.684,5.226,-4.733)
N4: (26.313,6.603,-3.551)
C6: (25.939,5.302,-6.866)
C5: (25.640,5.995,-5.763)
O3': (25.070,1.692,-9.928)
Image (generated by PyMOL):