Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:B2:B24
Extra
PDB:
ATOM 1 O3' U A 1 54.372 12.777 104.161 1.00122.01 O
ATOM 2 P A A 2 54.413 13.391 102.642 1.00116.69 P
ATOM 3 OP1 A A 2 52.991 13.417 102.284 1.00117.08 O
ATOM 4 OP2 A A 2 55.328 12.714 101.783 1.00117.00 O
ATOM 5 O5' A A 2 55.022 14.880 102.636 1.00111.78 O
ATOM 6 C5' A A 2 54.960 15.689 103.792 1.00103.34 C
ATOM 7 C4' A A 2 56.203 16.556 104.029 1.00 97.17 C
ATOM 8 O4' A A 2 56.977 15.992 105.061 1.00 96.59 O
ATOM 9 C3' A A 2 57.190 16.874 102.947 1.00 93.16 C
ATOM 10 O3' A A 2 58.004 18.058 103.317 1.00 86.69 O
ATOM 11 C2' A A 2 57.982 15.563 103.015 1.00 93.76 C
ATOM 12 O2' A A 2 59.293 15.667 102.591 1.00 93.04 O
ATOM 13 C1' A A 2 58.029 15.254 104.510 1.00 95.81 C
ATOM 14 N9 A A 2 57.887 13.829 104.870 1.00 96.91 N
ATOM 15 C8 A A 2 57.579 12.803 104.011 1.00 97.00 C
ATOM 16 N7 A A 2 57.606 11.608 104.567 1.00 97.19 N
ATOM 17 C5 A A 2 57.918 11.863 105.893 1.00 97.70 C
ATOM 18 C6 A A 2 58.097 11.006 106.985 1.00 98.18 C
ATOM 19 N6 A A 2 58.011 9.679 106.872 1.00 99.19 N
ATOM 20 N1 A A 2 58.391 11.559 108.185 1.00 97.99 N
ATOM 21 C2 A A 2 58.521 12.893 108.259 1.00 97.34 C
ATOM 22 N3 A A 2 58.389 13.815 107.297 1.00 97.46 N
ATOM 23 C4 A A 2 58.083 13.230 106.110 1.00 97.45 C
ATOM 24 P G A 3 58.246 19.322 102.275 1.00 80.07 P
ATOM 25 OP1 G A 3 59.616 19.794 102.256 1.00 79.76 O
ATOM 26 OP2 G A 3 57.171 20.248 102.453 1.00 79.64 O
ATOM 27 O5' G A 3 58.181 18.719 100.825 1.00 76.78 O
TER
ATOM 1 O3' U B 23 61.096 0.974 98.897 1.00142.34 O
ATOM 2 P G B 24 61.844 2.380 98.883 1.00139.95 P
ATOM 3 OP1 G B 24 62.729 2.675 97.751 1.00140.11 O
ATOM 4 OP2 G B 24 62.188 2.566 100.167 1.00139.66 O
ATOM 5 O5' G B 24 60.698 3.405 98.742 1.00136.89 O
ATOM 6 C5' G B 24 59.847 3.288 97.543 1.00132.63 C
ATOM 7 C4' G B 24 58.575 4.132 97.464 1.00129.26 C
ATOM 8 O4' G B 24 57.677 3.973 98.721 1.00129.84 O
ATOM 9 C3' G B 24 58.908 5.651 97.406 1.00126.34 C
ATOM 10 O3' G B 24 59.459 5.994 96.194 1.00119.96 O
ATOM 11 C2' G B 24 57.552 6.300 97.872 1.00127.32 C
ATOM 12 O2' G B 24 56.328 6.112 97.082 1.00127.44 O
ATOM 13 C1' G B 24 57.169 5.302 99.041 1.00129.22 C
ATOM 14 N9 G B 24 57.822 5.709 100.253 1.00130.12 N
ATOM 15 C8 G B 24 58.780 5.062 100.994 1.00130.54 C
ATOM 16 N7 G B 24 59.140 5.742 102.048 1.00130.41 N
ATOM 17 C5 G B 24 58.353 6.907 101.958 1.00130.58 C
ATOM 18 C6 G B 24 58.165 8.048 102.836 1.00130.48 C
ATOM 19 O6 G B 24 58.611 8.233 103.974 1.00130.36 O
ATOM 20 N1 G B 24 57.285 9.001 102.277 1.00130.05 N
ATOM 21 C2 G B 24 56.590 8.869 101.120 1.00130.24 C
ATOM 22 N2 G B 24 55.872 9.989 100.767 1.00130.63 N
ATOM 23 N3 G B 24 56.630 7.773 100.376 1.00130.51 N
ATOM 24 C4 G B 24 57.558 6.867 100.840 1.00130.43 C
TER
ATOM 2 P A A 2 54.413 13.391 102.642 1.00116.69 P
ATOM 3 OP1 A A 2 52.991 13.417 102.284 1.00117.08 O
ATOM 4 OP2 A A 2 55.328 12.714 101.783 1.00117.00 O
ATOM 5 O5' A A 2 55.022 14.880 102.636 1.00111.78 O
ATOM 6 C5' A A 2 54.960 15.689 103.792 1.00103.34 C
ATOM 7 C4' A A 2 56.203 16.556 104.029 1.00 97.17 C
ATOM 8 O4' A A 2 56.977 15.992 105.061 1.00 96.59 O
ATOM 9 C3' A A 2 57.190 16.874 102.947 1.00 93.16 C
ATOM 10 O3' A A 2 58.004 18.058 103.317 1.00 86.69 O
ATOM 11 C2' A A 2 57.982 15.563 103.015 1.00 93.76 C
ATOM 12 O2' A A 2 59.293 15.667 102.591 1.00 93.04 O
ATOM 13 C1' A A 2 58.029 15.254 104.510 1.00 95.81 C
ATOM 14 N9 A A 2 57.887 13.829 104.870 1.00 96.91 N
ATOM 15 C8 A A 2 57.579 12.803 104.011 1.00 97.00 C
ATOM 16 N7 A A 2 57.606 11.608 104.567 1.00 97.19 N
ATOM 17 C5 A A 2 57.918 11.863 105.893 1.00 97.70 C
ATOM 18 C6 A A 2 58.097 11.006 106.985 1.00 98.18 C
ATOM 19 N6 A A 2 58.011 9.679 106.872 1.00 99.19 N
ATOM 20 N1 A A 2 58.391 11.559 108.185 1.00 97.99 N
ATOM 21 C2 A A 2 58.521 12.893 108.259 1.00 97.34 C
ATOM 22 N3 A A 2 58.389 13.815 107.297 1.00 97.46 N
ATOM 23 C4 A A 2 58.083 13.230 106.110 1.00 97.45 C
ATOM 24 P G A 3 58.246 19.322 102.275 1.00 80.07 P
ATOM 25 OP1 G A 3 59.616 19.794 102.256 1.00 79.76 O
ATOM 26 OP2 G A 3 57.171 20.248 102.453 1.00 79.64 O
ATOM 27 O5' G A 3 58.181 18.719 100.825 1.00 76.78 O
TER
ATOM 1 O3' U B 23 61.096 0.974 98.897 1.00142.34 O
ATOM 2 P G B 24 61.844 2.380 98.883 1.00139.95 P
ATOM 3 OP1 G B 24 62.729 2.675 97.751 1.00140.11 O
ATOM 4 OP2 G B 24 62.188 2.566 100.167 1.00139.66 O
ATOM 5 O5' G B 24 60.698 3.405 98.742 1.00136.89 O
ATOM 6 C5' G B 24 59.847 3.288 97.543 1.00132.63 C
ATOM 7 C4' G B 24 58.575 4.132 97.464 1.00129.26 C
ATOM 8 O4' G B 24 57.677 3.973 98.721 1.00129.84 O
ATOM 9 C3' G B 24 58.908 5.651 97.406 1.00126.34 C
ATOM 10 O3' G B 24 59.459 5.994 96.194 1.00119.96 O
ATOM 11 C2' G B 24 57.552 6.300 97.872 1.00127.32 C
ATOM 12 O2' G B 24 56.328 6.112 97.082 1.00127.44 O
ATOM 13 C1' G B 24 57.169 5.302 99.041 1.00129.22 C
ATOM 14 N9 G B 24 57.822 5.709 100.253 1.00130.12 N
ATOM 15 C8 G B 24 58.780 5.062 100.994 1.00130.54 C
ATOM 16 N7 G B 24 59.140 5.742 102.048 1.00130.41 N
ATOM 17 C5 G B 24 58.353 6.907 101.958 1.00130.58 C
ATOM 18 C6 G B 24 58.165 8.048 102.836 1.00130.48 C
ATOM 19 O6 G B 24 58.611 8.233 103.974 1.00130.36 O
ATOM 20 N1 G B 24 57.285 9.001 102.277 1.00130.05 N
ATOM 21 C2 G B 24 56.590 8.869 101.120 1.00130.24 C
ATOM 22 N2 G B 24 55.872 9.989 100.767 1.00130.63 N
ATOM 23 N3 G B 24 56.630 7.773 100.376 1.00130.51 N
ATOM 24 C4 G B 24 57.558 6.867 100.840 1.00130.43 C
TER
Atoms:
OP1: (52.991,13.417,102.284)
OP2: (55.328,12.714,101.783)
C3': (57.190,16.874,102.947)
C1': (58.029,15.254,104.510)
C5': (54.960,15.689,103.792)
O4': (56.977,15.992,105.061)
C8: (57.579,12.803,104.011)
O2': (59.293,15.667,102.591)
C6: (58.097,11.006,106.985)
C5: (57.918,11.863,105.893)
C4: (58.083,13.230,106.110)
P: (54.413,13.391,102.642)
C4': (56.203,16.556,104.029)
C2': (57.982,15.563,103.015)
C2: (58.521,12.893,108.259)
N1: (58.391,11.559,108.185)
N3: (58.389,13.815,107.297)
N6: (58.011,9.679,106.872)
N7: (57.606,11.608,104.567)
N9: (57.887,13.829,104.870)
O5': (55.022,14.880,102.636)
O3': (58.004,18.058,103.317)
OP2: (55.328,12.714,101.783)
C3': (57.190,16.874,102.947)
C1': (58.029,15.254,104.510)
C5': (54.960,15.689,103.792)
O4': (56.977,15.992,105.061)
C8: (57.579,12.803,104.011)
O2': (59.293,15.667,102.591)
C6: (58.097,11.006,106.985)
C5: (57.918,11.863,105.893)
C4: (58.083,13.230,106.110)
P: (54.413,13.391,102.642)
C4': (56.203,16.556,104.029)
C2': (57.982,15.563,103.015)
C2: (58.521,12.893,108.259)
N1: (58.391,11.559,108.185)
N3: (58.389,13.815,107.297)
N6: (58.011,9.679,106.872)
N7: (57.606,11.608,104.567)
N9: (57.887,13.829,104.870)
O5': (55.022,14.880,102.636)
O3': (58.004,18.058,103.317)
OP1: (62.729,2.675,97.751)
OP2: (62.188,2.566,100.167)
C3': (58.908,5.651,97.406)
C1': (57.169,5.302,99.041)
C5': (59.847,3.288,97.543)
O6: (58.611,8.233,103.974)
O4': (57.677,3.973,98.721)
C8: (58.780,5.062,100.994)
C2: (56.590,8.869,101.120)
C6: (58.165,8.048,102.836)
C5: (58.353,6.907,101.958)
C4: (57.558,6.867,100.840)
P: (61.844,2.380,98.883)
C4': (58.575,4.132,97.464)
C2': (57.552,6.300,97.872)
O2': (56.328,6.112,97.082)
N1: (57.285,9.001,102.277)
N2: (55.872,9.989,100.767)
N3: (56.630,7.773,100.376)
N7: (59.140,5.742,102.048)
N9: (57.822,5.709,100.253)
O5': (60.698,3.405,98.742)
O3': (59.459,5.994,96.194)
OP2: (62.188,2.566,100.167)
C3': (58.908,5.651,97.406)
C1': (57.169,5.302,99.041)
C5': (59.847,3.288,97.543)
O6: (58.611,8.233,103.974)
O4': (57.677,3.973,98.721)
C8: (58.780,5.062,100.994)
C2: (56.590,8.869,101.120)
C6: (58.165,8.048,102.836)
C5: (58.353,6.907,101.958)
C4: (57.558,6.867,100.840)
P: (61.844,2.380,98.883)
C4': (58.575,4.132,97.464)
C2': (57.552,6.300,97.872)
O2': (56.328,6.112,97.082)
N1: (57.285,9.001,102.277)
N2: (55.872,9.989,100.767)
N3: (56.630,7.773,100.376)
N7: (59.140,5.742,102.048)
N9: (57.822,5.709,100.253)
O5': (60.698,3.405,98.742)
O3': (59.459,5.994,96.194)
Image (generated by PyMOL):