Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1481:1498
Extra
PDB:
ATOM 1 O3' U A 480 51.580 2.768 -38.337 1.00 83.92 O
ATOM 2 P A A 481 50.792 3.398 -39.577 1.00 96.93 P
ATOM 3 OP1 A A 481 51.089 4.847 -39.594 1.00 96.99 O
ATOM 4 OP2 A A 481 49.381 2.957 -39.459 1.00 96.91 O
ATOM 5 O5' A A 481 51.480 2.696 -40.823 1.00 97.70 O
ATOM 6 C5' A A 481 52.570 3.316 -41.483 1.00 98.11 C
ATOM 7 C4' A A 481 53.081 2.473 -42.622 1.00 98.83 C
ATOM 8 O4' A A 481 53.055 1.074 -42.244 1.00 98.54 O
ATOM 9 C3' A A 481 52.270 2.507 -43.908 1.00 99.73 C
ATOM 10 O3' A A 481 52.495 3.676 -44.688 1.00100.29 O
ATOM 11 C2' A A 481 52.697 1.210 -44.587 1.00100.14 C
ATOM 12 O2' A A 481 53.988 1.339 -45.170 1.00100.50 O
ATOM 13 C1' A A 481 52.806 0.274 -43.379 1.00 99.30 C
ATOM 14 N9 A A 481 51.558 -0.482 -43.159 1.00 99.19 N
ATOM 15 C8 A A 481 50.591 -0.384 -42.180 1.00 98.58 C
ATOM 16 N7 A A 481 49.605 -1.239 -42.336 1.00 98.72 N
ATOM 17 C5 A A 481 49.955 -1.932 -43.493 1.00 99.48 C
ATOM 18 C6 A A 481 49.348 -2.968 -44.231 1.00100.02 C
ATOM 19 N6 A A 481 48.191 -3.543 -43.896 1.00 99.86 N
ATOM 20 N1 A A 481 49.968 -3.417 -45.343 1.00100.76 N
ATOM 21 C2 A A 481 51.120 -2.854 -45.700 1.00100.95 C
ATOM 22 N3 A A 481 51.795 -1.884 -45.107 1.00100.50 N
ATOM 23 C4 A A 481 51.147 -1.469 -44.005 1.00 99.78 C
ATOM 24 P G A 482 51.255 4.608 -45.138 1.00127.13 P
ATOM 25 OP1 G A 482 51.818 5.918 -45.538 1.00127.44 O
ATOM 26 OP2 G A 482 50.242 4.572 -44.055 1.00126.43 O
ATOM 27 O5' G A 482 50.703 3.844 -46.415 1.00128.01 O
TER
ATOM 1 O3' U B 497 39.834 -7.297 -45.054 1.00126.63 O
ATOM 2 P A B 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 3 OP1 A B 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 4 OP2 A B 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 5 O5' A B 498 42.166 -7.905 -44.388 1.00132.52 O
ATOM 6 C5' A B 498 42.791 -7.615 -45.630 1.00133.32 C
ATOM 7 C4' A B 498 44.038 -6.808 -45.423 1.00133.06 C
ATOM 8 O4' A B 498 43.702 -5.576 -44.748 1.00132.58 O
ATOM 9 C3' A B 498 45.094 -7.461 -44.553 1.00132.39 C
ATOM 10 O3' A B 498 45.960 -8.283 -45.308 1.00132.88 O
ATOM 11 C2' A B 498 45.808 -6.282 -43.910 1.00131.86 C
ATOM 12 O2' A B 498 46.833 -5.802 -44.769 1.00132.38 O
ATOM 13 C1' A B 498 44.703 -5.228 -43.836 1.00131.87 C
ATOM 14 N9 A B 498 44.088 -5.125 -42.504 1.00131.00 N
ATOM 15 C8 A B 498 43.027 -5.841 -42.008 1.00130.76 C
ATOM 16 N7 A B 498 42.676 -5.483 -40.795 1.00129.96 N
ATOM 17 C5 A B 498 43.558 -4.449 -40.488 1.00129.67 C
ATOM 18 C6 A B 498 43.723 -3.633 -39.351 1.00128.90 C
ATOM 19 N6 A B 498 42.961 -3.740 -38.259 1.00128.24 N
ATOM 20 N1 A B 498 44.700 -2.691 -39.372 1.00128.84 N
ATOM 21 C2 A B 498 45.468 -2.578 -40.461 1.00129.51 C
ATOM 22 N3 A B 498 45.409 -3.286 -41.587 1.00130.27 N
ATOM 23 C4 A B 498 44.427 -4.211 -41.537 1.00130.31 C
ATOM 24 P U B 499 46.293 -9.777 -44.836 1.00107.80 P
ATOM 25 OP1 U B 499 47.443 -10.246 -45.663 1.00108.33 O
ATOM 26 OP2 U B 499 45.027 -10.545 -44.863 1.00107.94 O
ATOM 27 O5' U B 499 46.762 -9.587 -43.331 1.00106.73 O
TER
ATOM 2 P A A 481 50.792 3.398 -39.577 1.00 96.93 P
ATOM 3 OP1 A A 481 51.089 4.847 -39.594 1.00 96.99 O
ATOM 4 OP2 A A 481 49.381 2.957 -39.459 1.00 96.91 O
ATOM 5 O5' A A 481 51.480 2.696 -40.823 1.00 97.70 O
ATOM 6 C5' A A 481 52.570 3.316 -41.483 1.00 98.11 C
ATOM 7 C4' A A 481 53.081 2.473 -42.622 1.00 98.83 C
ATOM 8 O4' A A 481 53.055 1.074 -42.244 1.00 98.54 O
ATOM 9 C3' A A 481 52.270 2.507 -43.908 1.00 99.73 C
ATOM 10 O3' A A 481 52.495 3.676 -44.688 1.00100.29 O
ATOM 11 C2' A A 481 52.697 1.210 -44.587 1.00100.14 C
ATOM 12 O2' A A 481 53.988 1.339 -45.170 1.00100.50 O
ATOM 13 C1' A A 481 52.806 0.274 -43.379 1.00 99.30 C
ATOM 14 N9 A A 481 51.558 -0.482 -43.159 1.00 99.19 N
ATOM 15 C8 A A 481 50.591 -0.384 -42.180 1.00 98.58 C
ATOM 16 N7 A A 481 49.605 -1.239 -42.336 1.00 98.72 N
ATOM 17 C5 A A 481 49.955 -1.932 -43.493 1.00 99.48 C
ATOM 18 C6 A A 481 49.348 -2.968 -44.231 1.00100.02 C
ATOM 19 N6 A A 481 48.191 -3.543 -43.896 1.00 99.86 N
ATOM 20 N1 A A 481 49.968 -3.417 -45.343 1.00100.76 N
ATOM 21 C2 A A 481 51.120 -2.854 -45.700 1.00100.95 C
ATOM 22 N3 A A 481 51.795 -1.884 -45.107 1.00100.50 N
ATOM 23 C4 A A 481 51.147 -1.469 -44.005 1.00 99.78 C
ATOM 24 P G A 482 51.255 4.608 -45.138 1.00127.13 P
ATOM 25 OP1 G A 482 51.818 5.918 -45.538 1.00127.44 O
ATOM 26 OP2 G A 482 50.242 4.572 -44.055 1.00126.43 O
ATOM 27 O5' G A 482 50.703 3.844 -46.415 1.00128.01 O
TER
ATOM 1 O3' U B 497 39.834 -7.297 -45.054 1.00126.63 O
ATOM 2 P A B 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 3 OP1 A B 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 4 OP2 A B 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 5 O5' A B 498 42.166 -7.905 -44.388 1.00132.52 O
ATOM 6 C5' A B 498 42.791 -7.615 -45.630 1.00133.32 C
ATOM 7 C4' A B 498 44.038 -6.808 -45.423 1.00133.06 C
ATOM 8 O4' A B 498 43.702 -5.576 -44.748 1.00132.58 O
ATOM 9 C3' A B 498 45.094 -7.461 -44.553 1.00132.39 C
ATOM 10 O3' A B 498 45.960 -8.283 -45.308 1.00132.88 O
ATOM 11 C2' A B 498 45.808 -6.282 -43.910 1.00131.86 C
ATOM 12 O2' A B 498 46.833 -5.802 -44.769 1.00132.38 O
ATOM 13 C1' A B 498 44.703 -5.228 -43.836 1.00131.87 C
ATOM 14 N9 A B 498 44.088 -5.125 -42.504 1.00131.00 N
ATOM 15 C8 A B 498 43.027 -5.841 -42.008 1.00130.76 C
ATOM 16 N7 A B 498 42.676 -5.483 -40.795 1.00129.96 N
ATOM 17 C5 A B 498 43.558 -4.449 -40.488 1.00129.67 C
ATOM 18 C6 A B 498 43.723 -3.633 -39.351 1.00128.90 C
ATOM 19 N6 A B 498 42.961 -3.740 -38.259 1.00128.24 N
ATOM 20 N1 A B 498 44.700 -2.691 -39.372 1.00128.84 N
ATOM 21 C2 A B 498 45.468 -2.578 -40.461 1.00129.51 C
ATOM 22 N3 A B 498 45.409 -3.286 -41.587 1.00130.27 N
ATOM 23 C4 A B 498 44.427 -4.211 -41.537 1.00130.31 C
ATOM 24 P U B 499 46.293 -9.777 -44.836 1.00107.80 P
ATOM 25 OP1 U B 499 47.443 -10.246 -45.663 1.00108.33 O
ATOM 26 OP2 U B 499 45.027 -10.545 -44.863 1.00107.94 O
ATOM 27 O5' U B 499 46.762 -9.587 -43.331 1.00106.73 O
TER
Atoms:
OP1: (51.089,4.847,-39.594)
OP2: (49.381,2.957,-39.459)
C3': (52.270,2.507,-43.908)
C1': (52.806,0.274,-43.379)
C5': (52.570,3.316,-41.483)
O4': (53.055,1.074,-42.244)
C8: (50.591,-0.384,-42.180)
O2': (53.988,1.339,-45.170)
C6: (49.348,-2.968,-44.231)
C5: (49.955,-1.932,-43.493)
C4: (51.147,-1.469,-44.005)
P: (50.792,3.398,-39.577)
C4': (53.081,2.473,-42.622)
C2': (52.697,1.210,-44.587)
C2: (51.120,-2.854,-45.700)
N1: (49.968,-3.417,-45.343)
N3: (51.795,-1.884,-45.107)
N6: (48.191,-3.543,-43.896)
N7: (49.605,-1.239,-42.336)
N9: (51.558,-0.482,-43.159)
O5': (51.480,2.696,-40.823)
O3': (52.495,3.676,-44.688)
OP2: (49.381,2.957,-39.459)
C3': (52.270,2.507,-43.908)
C1': (52.806,0.274,-43.379)
C5': (52.570,3.316,-41.483)
O4': (53.055,1.074,-42.244)
C8: (50.591,-0.384,-42.180)
O2': (53.988,1.339,-45.170)
C6: (49.348,-2.968,-44.231)
C5: (49.955,-1.932,-43.493)
C4: (51.147,-1.469,-44.005)
P: (50.792,3.398,-39.577)
C4': (53.081,2.473,-42.622)
C2': (52.697,1.210,-44.587)
C2: (51.120,-2.854,-45.700)
N1: (49.968,-3.417,-45.343)
N3: (51.795,-1.884,-45.107)
N6: (48.191,-3.543,-43.896)
N7: (49.605,-1.239,-42.336)
N9: (51.558,-0.482,-43.159)
O5': (51.480,2.696,-40.823)
O3': (52.495,3.676,-44.688)
OP1: (40.558,-9.681,-45.179)
OP2: (40.214,-8.523,-42.913)
C3': (45.094,-7.461,-44.553)
C1': (44.703,-5.228,-43.836)
C5': (42.791,-7.615,-45.630)
O4': (43.702,-5.576,-44.748)
C8: (43.027,-5.841,-42.008)
O2': (46.833,-5.802,-44.769)
C6: (43.723,-3.633,-39.351)
C5: (43.558,-4.449,-40.488)
C4: (44.427,-4.211,-41.537)
P: (40.675,-8.461,-44.330)
C4': (44.038,-6.808,-45.423)
C2': (45.808,-6.282,-43.910)
C2: (45.468,-2.578,-40.461)
N1: (44.700,-2.691,-39.372)
N3: (45.409,-3.286,-41.587)
N6: (42.961,-3.740,-38.259)
N7: (42.676,-5.483,-40.795)
N9: (44.088,-5.125,-42.504)
O5': (42.166,-7.905,-44.388)
O3': (45.960,-8.283,-45.308)
OP2: (40.214,-8.523,-42.913)
C3': (45.094,-7.461,-44.553)
C1': (44.703,-5.228,-43.836)
C5': (42.791,-7.615,-45.630)
O4': (43.702,-5.576,-44.748)
C8: (43.027,-5.841,-42.008)
O2': (46.833,-5.802,-44.769)
C6: (43.723,-3.633,-39.351)
C5: (43.558,-4.449,-40.488)
C4: (44.427,-4.211,-41.537)
P: (40.675,-8.461,-44.330)
C4': (44.038,-6.808,-45.423)
C2': (45.808,-6.282,-43.910)
C2: (45.468,-2.578,-40.461)
N1: (44.700,-2.691,-39.372)
N3: (45.409,-3.286,-41.587)
N6: (42.961,-3.740,-38.259)
N7: (42.676,-5.483,-40.795)
N9: (44.088,-5.125,-42.504)
O5': (42.166,-7.905,-44.388)
O3': (45.960,-8.283,-45.308)
Image (generated by PyMOL):