Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01188:01189
Extra
PDB:
ATOM 1 O3' C A1187 50.683 104.424 141.230 1.00 41.09 O
ATOM 2 P C A1188 51.230 105.148 139.908 1.00 41.88 P
ATOM 3 OP1 C A1188 51.986 106.338 140.368 1.00 38.93 O
ATOM 4 OP2 C A1188 50.101 105.318 138.959 1.00 41.29 O
ATOM 5 O5' C A1188 52.259 104.094 139.309 1.00 39.99 O
ATOM 6 C5' C A1188 53.463 103.769 140.023 1.00 39.17 C
ATOM 7 C4' C A1188 54.121 102.562 139.414 1.00 38.81 C
ATOM 8 O4' C A1188 53.219 101.431 139.507 1.00 39.28 O
ATOM 9 C3' C A1188 54.438 102.666 137.934 1.00 40.05 C
ATOM 10 O3' C A1188 55.664 103.363 137.736 1.00 42.01 O
ATOM 11 C2' C A1188 54.498 101.200 137.517 1.00 40.00 C
ATOM 12 O2' C A1188 55.713 100.565 137.863 1.00 39.26 O
ATOM 13 C1' C A1188 53.373 100.603 138.368 1.00 39.19 C
ATOM 14 N1 C A1188 52.075 100.533 137.676 1.00 39.79 N
ATOM 15 C2 C A1188 51.737 99.363 136.988 1.00 40.66 C
ATOM 16 O2 C A1188 52.554 98.428 136.948 1.00 42.71 O
ATOM 17 N3 C A1188 50.534 99.283 136.376 1.00 40.34 N
ATOM 18 C4 C A1188 49.692 100.316 136.421 1.00 40.00 C
ATOM 19 N4 C A1188 48.512 100.187 135.814 1.00 40.95 N
ATOM 20 C5 C A1188 50.020 101.526 137.094 1.00 39.84 C
ATOM 21 C6 C A1188 51.207 101.590 137.705 1.00 39.75 C
ATOM 22 P A A1189 55.977 104.058 136.317 1.00 43.68 P
ATOM 23 OP1 A A1189 55.797 103.038 135.249 1.00 43.59 O
ATOM 24 OP2 A A1189 57.282 104.750 136.459 1.00 42.68 O
ATOM 25 O5' A A1189 54.850 105.172 136.144 1.00 41.48 O
TER
ATOM 1 O3' C B1188 55.664 103.363 137.736 1.00 42.01 O
ATOM 2 P A B1189 55.977 104.058 136.317 1.00 43.68 P
ATOM 3 OP1 A B1189 55.797 103.038 135.249 1.00 43.59 O
ATOM 4 OP2 A B1189 57.282 104.750 136.459 1.00 42.68 O
ATOM 5 O5' A B1189 54.850 105.172 136.144 1.00 41.48 O
ATOM 6 C5' A B1189 55.060 106.297 135.271 1.00 40.21 C
ATOM 7 C4' A B1189 53.742 106.809 134.739 1.00 40.57 C
ATOM 8 O4' A B1189 53.149 105.787 133.901 1.00 41.27 O
ATOM 9 C3' A B1189 52.682 107.171 135.774 1.00 40.40 C
ATOM 10 O3' A B1189 51.887 108.245 135.278 1.00 38.66 O
ATOM 11 C2' A B1189 51.863 105.888 135.866 1.00 41.08 C
ATOM 12 O2' A B1189 50.541 106.088 136.319 1.00 40.00 O
ATOM 13 C1' A B1189 51.885 105.417 134.413 1.00 39.83 C
ATOM 14 N9 A B1189 51.764 103.974 134.239 1.00 38.82 N
ATOM 15 C8 A B1189 52.744 103.035 134.441 1.00 40.05 C
ATOM 16 N7 A B1189 52.383 101.818 134.122 1.00 41.46 N
ATOM 17 C5 A B1189 51.070 101.961 133.699 1.00 39.09 C
ATOM 18 C6 A B1189 50.140 101.042 133.199 1.00 38.14 C
ATOM 19 N6 A B1189 50.404 99.746 133.035 1.00 38.44 N
ATOM 20 N1 A B1189 48.917 101.506 132.861 1.00 37.24 N
ATOM 21 C2 A B1189 48.665 102.810 133.011 1.00 38.20 C
ATOM 22 N3 A B1189 49.464 103.778 133.461 1.00 39.41 N
ATOM 23 C4 A B1189 50.667 103.280 133.791 1.00 38.83 C
ATOM 24 P A B1190 52.330 109.760 135.576 1.00 40.96 P
ATOM 25 OP1 A B1190 52.768 109.877 136.984 1.00 41.06 O
ATOM 26 OP2 A B1190 51.252 110.648 135.076 1.00 40.64 O
ATOM 27 O5' A B1190 53.635 109.948 134.678 1.00 40.74 O
TER
ATOM 2 P C A1188 51.230 105.148 139.908 1.00 41.88 P
ATOM 3 OP1 C A1188 51.986 106.338 140.368 1.00 38.93 O
ATOM 4 OP2 C A1188 50.101 105.318 138.959 1.00 41.29 O
ATOM 5 O5' C A1188 52.259 104.094 139.309 1.00 39.99 O
ATOM 6 C5' C A1188 53.463 103.769 140.023 1.00 39.17 C
ATOM 7 C4' C A1188 54.121 102.562 139.414 1.00 38.81 C
ATOM 8 O4' C A1188 53.219 101.431 139.507 1.00 39.28 O
ATOM 9 C3' C A1188 54.438 102.666 137.934 1.00 40.05 C
ATOM 10 O3' C A1188 55.664 103.363 137.736 1.00 42.01 O
ATOM 11 C2' C A1188 54.498 101.200 137.517 1.00 40.00 C
ATOM 12 O2' C A1188 55.713 100.565 137.863 1.00 39.26 O
ATOM 13 C1' C A1188 53.373 100.603 138.368 1.00 39.19 C
ATOM 14 N1 C A1188 52.075 100.533 137.676 1.00 39.79 N
ATOM 15 C2 C A1188 51.737 99.363 136.988 1.00 40.66 C
ATOM 16 O2 C A1188 52.554 98.428 136.948 1.00 42.71 O
ATOM 17 N3 C A1188 50.534 99.283 136.376 1.00 40.34 N
ATOM 18 C4 C A1188 49.692 100.316 136.421 1.00 40.00 C
ATOM 19 N4 C A1188 48.512 100.187 135.814 1.00 40.95 N
ATOM 20 C5 C A1188 50.020 101.526 137.094 1.00 39.84 C
ATOM 21 C6 C A1188 51.207 101.590 137.705 1.00 39.75 C
ATOM 22 P A A1189 55.977 104.058 136.317 1.00 43.68 P
ATOM 23 OP1 A A1189 55.797 103.038 135.249 1.00 43.59 O
ATOM 24 OP2 A A1189 57.282 104.750 136.459 1.00 42.68 O
ATOM 25 O5' A A1189 54.850 105.172 136.144 1.00 41.48 O
TER
ATOM 1 O3' C B1188 55.664 103.363 137.736 1.00 42.01 O
ATOM 2 P A B1189 55.977 104.058 136.317 1.00 43.68 P
ATOM 3 OP1 A B1189 55.797 103.038 135.249 1.00 43.59 O
ATOM 4 OP2 A B1189 57.282 104.750 136.459 1.00 42.68 O
ATOM 5 O5' A B1189 54.850 105.172 136.144 1.00 41.48 O
ATOM 6 C5' A B1189 55.060 106.297 135.271 1.00 40.21 C
ATOM 7 C4' A B1189 53.742 106.809 134.739 1.00 40.57 C
ATOM 8 O4' A B1189 53.149 105.787 133.901 1.00 41.27 O
ATOM 9 C3' A B1189 52.682 107.171 135.774 1.00 40.40 C
ATOM 10 O3' A B1189 51.887 108.245 135.278 1.00 38.66 O
ATOM 11 C2' A B1189 51.863 105.888 135.866 1.00 41.08 C
ATOM 12 O2' A B1189 50.541 106.088 136.319 1.00 40.00 O
ATOM 13 C1' A B1189 51.885 105.417 134.413 1.00 39.83 C
ATOM 14 N9 A B1189 51.764 103.974 134.239 1.00 38.82 N
ATOM 15 C8 A B1189 52.744 103.035 134.441 1.00 40.05 C
ATOM 16 N7 A B1189 52.383 101.818 134.122 1.00 41.46 N
ATOM 17 C5 A B1189 51.070 101.961 133.699 1.00 39.09 C
ATOM 18 C6 A B1189 50.140 101.042 133.199 1.00 38.14 C
ATOM 19 N6 A B1189 50.404 99.746 133.035 1.00 38.44 N
ATOM 20 N1 A B1189 48.917 101.506 132.861 1.00 37.24 N
ATOM 21 C2 A B1189 48.665 102.810 133.011 1.00 38.20 C
ATOM 22 N3 A B1189 49.464 103.778 133.461 1.00 39.41 N
ATOM 23 C4 A B1189 50.667 103.280 133.791 1.00 38.83 C
ATOM 24 P A B1190 52.330 109.760 135.576 1.00 40.96 P
ATOM 25 OP1 A B1190 52.768 109.877 136.984 1.00 41.06 O
ATOM 26 OP2 A B1190 51.252 110.648 135.076 1.00 40.64 O
ATOM 27 O5' A B1190 53.635 109.948 134.678 1.00 40.74 O
TER
Atoms:
C2: (51.737,99.363,136.988)
OP1: (51.986,106.338,140.368)
OP2: (50.101,105.318,138.959)
C4: (49.692,100.316,136.421)
O5': (52.259,104.094,139.309)
C3': (54.438,102.666,137.934)
C1': (53.373,100.603,138.368)
O4': (53.219,101.431,139.507)
C5': (53.463,103.769,140.023)
P: (51.230,105.148,139.908)
O2: (52.554,98.428,136.948)
C4': (54.121,102.562,139.414)
C2': (54.498,101.200,137.517)
O2': (55.713,100.565,137.863)
N1: (52.075,100.533,137.676)
N3: (50.534,99.283,136.376)
N4: (48.512,100.187,135.814)
C6: (51.207,101.590,137.705)
C5: (50.020,101.526,137.094)
O3': (55.664,103.363,137.736)
OP1: (51.986,106.338,140.368)
OP2: (50.101,105.318,138.959)
C4: (49.692,100.316,136.421)
O5': (52.259,104.094,139.309)
C3': (54.438,102.666,137.934)
C1': (53.373,100.603,138.368)
O4': (53.219,101.431,139.507)
C5': (53.463,103.769,140.023)
P: (51.230,105.148,139.908)
O2: (52.554,98.428,136.948)
C4': (54.121,102.562,139.414)
C2': (54.498,101.200,137.517)
O2': (55.713,100.565,137.863)
N1: (52.075,100.533,137.676)
N3: (50.534,99.283,136.376)
N4: (48.512,100.187,135.814)
C6: (51.207,101.590,137.705)
C5: (50.020,101.526,137.094)
O3': (55.664,103.363,137.736)
OP1: (55.797,103.038,135.249)
OP2: (57.282,104.750,136.459)
C3': (52.682,107.171,135.774)
C1': (51.885,105.417,134.413)
C5': (55.060,106.297,135.271)
O4': (53.149,105.787,133.901)
C8: (52.744,103.035,134.441)
O2': (50.541,106.088,136.319)
C6: (50.140,101.042,133.199)
C5: (51.070,101.961,133.699)
C4: (50.667,103.280,133.791)
P: (55.977,104.058,136.317)
C4': (53.742,106.809,134.739)
C2': (51.863,105.888,135.866)
C2: (48.665,102.810,133.011)
N1: (48.917,101.506,132.861)
N3: (49.464,103.778,133.461)
N6: (50.404,99.746,133.035)
N7: (52.383,101.818,134.122)
N9: (51.764,103.974,134.239)
O5': (54.850,105.172,136.144)
O3': (51.887,108.245,135.278)
OP2: (57.282,104.750,136.459)
C3': (52.682,107.171,135.774)
C1': (51.885,105.417,134.413)
C5': (55.060,106.297,135.271)
O4': (53.149,105.787,133.901)
C8: (52.744,103.035,134.441)
O2': (50.541,106.088,136.319)
C6: (50.140,101.042,133.199)
C5: (51.070,101.961,133.699)
C4: (50.667,103.280,133.791)
P: (55.977,104.058,136.317)
C4': (53.742,106.809,134.739)
C2': (51.863,105.888,135.866)
C2: (48.665,102.810,133.011)
N1: (48.917,101.506,132.861)
N3: (49.464,103.778,133.461)
N6: (50.404,99.746,133.035)
N7: (52.383,101.818,134.122)
N9: (51.764,103.974,134.239)
O5': (54.850,105.172,136.144)
O3': (51.887,108.245,135.278)
Image (generated by PyMOL):