Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBT:D7:D8
Extra
PDB:
ATOM 1 O3' U A 6 -0.568 35.831 -4.080 1.00 36.17 O
ATOM 2 P C A 7 -1.909 34.980 -3.834 1.00 35.88 P
ATOM 3 OP1 C A 7 -2.059 33.990 -4.922 1.00 37.93 O
ATOM 4 OP2 C A 7 -3.024 35.919 -3.545 1.00 41.34 O
ATOM 5 O5' C A 7 -1.606 34.193 -2.489 1.00 39.44 O
ATOM 6 C5' C A 7 -0.379 33.493 -2.305 1.00 36.93 C
ATOM 7 C4' C A 7 -0.154 33.227 -0.835 1.00 38.34 C
ATOM 8 O4' C A 7 0.155 34.482 -0.167 1.00 37.81 O
ATOM 9 C3' C A 7 -1.348 32.665 -0.074 1.00 39.77 C
ATOM 10 O3' C A 7 -1.408 31.247 -0.189 1.00 42.25 O
ATOM 11 C2' C A 7 -1.074 33.131 1.356 1.00 40.21 C
ATOM 12 O2' C A 7 -0.180 32.312 2.086 1.00 43.52 O
ATOM 13 C1' C A 7 -0.462 34.512 1.109 1.00 37.40 C
ATOM 14 N1 C A 7 -1.448 35.606 1.128 1.00 36.80 N
ATOM 15 C2 C A 7 -1.635 36.329 2.313 1.00 36.27 C
ATOM 16 O2 C A 7 -0.961 36.042 3.309 1.00 38.34 O
ATOM 17 N3 C A 7 -2.548 37.320 2.344 1.00 36.53 N
ATOM 18 C4 C A 7 -3.266 37.600 1.255 1.00 35.35 C
ATOM 19 N4 C A 7 -4.169 38.576 1.341 1.00 36.62 N
ATOM 20 C5 C A 7 -3.093 36.888 0.033 1.00 36.43 C
ATOM 21 C6 C A 7 -2.181 35.911 0.013 1.00 36.27 C
ATOM 22 P A A 8 -2.812 30.487 0.013 1.00 41.37 P
ATOM 23 OP1 A A 8 -3.203 30.638 1.437 1.00 40.59 O
ATOM 24 OP2 A A 8 -2.715 29.122 -0.581 1.00 42.71 O
ATOM 25 O5' A A 8 -3.821 31.332 -0.872 1.00 43.01 O
TER
ATOM 1 O3' C B 7 -1.408 31.247 -0.189 1.00 42.25 O
ATOM 2 P A B 8 -2.812 30.487 0.013 1.00 41.37 P
ATOM 3 OP1 A B 8 -3.203 30.638 1.437 1.00 40.59 O
ATOM 4 OP2 A B 8 -2.715 29.122 -0.581 1.00 42.71 O
ATOM 5 O5' A B 8 -3.821 31.332 -0.872 1.00 43.01 O
ATOM 6 C5' A B 8 -4.813 30.676 -1.641 1.00 41.38 C
ATOM 7 C4' A B 8 -6.010 31.572 -1.849 1.00 40.11 C
ATOM 8 O4' A B 8 -6.405 32.188 -0.583 1.00 37.47 O
ATOM 9 C3' A B 8 -5.709 32.745 -2.774 1.00 37.80 C
ATOM 10 O3' A B 8 -6.924 33.122 -3.405 1.00 42.81 O
ATOM 11 C2' A B 8 -5.208 33.814 -1.803 1.00 34.45 C
ATOM 12 O2' A B 8 -5.324 35.137 -2.271 1.00 35.23 O
ATOM 13 C1' A B 8 -6.143 33.574 -0.627 1.00 34.54 C
ATOM 14 N9 A B 8 -5.761 34.064 0.695 1.00 36.95 N
ATOM 15 C8 A B 8 -4.887 33.534 1.611 1.00 34.51 C
ATOM 16 N7 A B 8 -4.770 34.252 2.707 1.00 35.88 N
ATOM 17 C5 A B 8 -5.629 35.327 2.499 1.00 37.31 C
ATOM 18 C6 A B 8 -5.970 36.465 3.294 1.00 37.92 C
ATOM 19 N6 A B 8 -5.461 36.720 4.505 1.00 32.71 N
ATOM 20 N1 A B 8 -6.865 37.340 2.783 1.00 35.89 N
ATOM 21 C2 A B 8 -7.379 37.092 1.568 1.00 36.67 C
ATOM 22 N3 A B 8 -7.143 36.072 0.734 1.00 36.15 N
ATOM 23 C4 A B 8 -6.250 35.218 1.264 1.00 36.09 C
ATOM 24 P G B 9 -6.959 33.313 -4.985 1.00 40.12 P
ATOM 25 OP1 G B 9 -6.536 32.041 -5.613 1.00 43.99 O
ATOM 26 OP2 G B 9 -6.169 34.550 -5.234 1.00 43.20 O
ATOM 27 O5' G B 9 -8.461 33.726 -5.352 1.00 40.93 O
TER
ATOM 2 P C A 7 -1.909 34.980 -3.834 1.00 35.88 P
ATOM 3 OP1 C A 7 -2.059 33.990 -4.922 1.00 37.93 O
ATOM 4 OP2 C A 7 -3.024 35.919 -3.545 1.00 41.34 O
ATOM 5 O5' C A 7 -1.606 34.193 -2.489 1.00 39.44 O
ATOM 6 C5' C A 7 -0.379 33.493 -2.305 1.00 36.93 C
ATOM 7 C4' C A 7 -0.154 33.227 -0.835 1.00 38.34 C
ATOM 8 O4' C A 7 0.155 34.482 -0.167 1.00 37.81 O
ATOM 9 C3' C A 7 -1.348 32.665 -0.074 1.00 39.77 C
ATOM 10 O3' C A 7 -1.408 31.247 -0.189 1.00 42.25 O
ATOM 11 C2' C A 7 -1.074 33.131 1.356 1.00 40.21 C
ATOM 12 O2' C A 7 -0.180 32.312 2.086 1.00 43.52 O
ATOM 13 C1' C A 7 -0.462 34.512 1.109 1.00 37.40 C
ATOM 14 N1 C A 7 -1.448 35.606 1.128 1.00 36.80 N
ATOM 15 C2 C A 7 -1.635 36.329 2.313 1.00 36.27 C
ATOM 16 O2 C A 7 -0.961 36.042 3.309 1.00 38.34 O
ATOM 17 N3 C A 7 -2.548 37.320 2.344 1.00 36.53 N
ATOM 18 C4 C A 7 -3.266 37.600 1.255 1.00 35.35 C
ATOM 19 N4 C A 7 -4.169 38.576 1.341 1.00 36.62 N
ATOM 20 C5 C A 7 -3.093 36.888 0.033 1.00 36.43 C
ATOM 21 C6 C A 7 -2.181 35.911 0.013 1.00 36.27 C
ATOM 22 P A A 8 -2.812 30.487 0.013 1.00 41.37 P
ATOM 23 OP1 A A 8 -3.203 30.638 1.437 1.00 40.59 O
ATOM 24 OP2 A A 8 -2.715 29.122 -0.581 1.00 42.71 O
ATOM 25 O5' A A 8 -3.821 31.332 -0.872 1.00 43.01 O
TER
ATOM 1 O3' C B 7 -1.408 31.247 -0.189 1.00 42.25 O
ATOM 2 P A B 8 -2.812 30.487 0.013 1.00 41.37 P
ATOM 3 OP1 A B 8 -3.203 30.638 1.437 1.00 40.59 O
ATOM 4 OP2 A B 8 -2.715 29.122 -0.581 1.00 42.71 O
ATOM 5 O5' A B 8 -3.821 31.332 -0.872 1.00 43.01 O
ATOM 6 C5' A B 8 -4.813 30.676 -1.641 1.00 41.38 C
ATOM 7 C4' A B 8 -6.010 31.572 -1.849 1.00 40.11 C
ATOM 8 O4' A B 8 -6.405 32.188 -0.583 1.00 37.47 O
ATOM 9 C3' A B 8 -5.709 32.745 -2.774 1.00 37.80 C
ATOM 10 O3' A B 8 -6.924 33.122 -3.405 1.00 42.81 O
ATOM 11 C2' A B 8 -5.208 33.814 -1.803 1.00 34.45 C
ATOM 12 O2' A B 8 -5.324 35.137 -2.271 1.00 35.23 O
ATOM 13 C1' A B 8 -6.143 33.574 -0.627 1.00 34.54 C
ATOM 14 N9 A B 8 -5.761 34.064 0.695 1.00 36.95 N
ATOM 15 C8 A B 8 -4.887 33.534 1.611 1.00 34.51 C
ATOM 16 N7 A B 8 -4.770 34.252 2.707 1.00 35.88 N
ATOM 17 C5 A B 8 -5.629 35.327 2.499 1.00 37.31 C
ATOM 18 C6 A B 8 -5.970 36.465 3.294 1.00 37.92 C
ATOM 19 N6 A B 8 -5.461 36.720 4.505 1.00 32.71 N
ATOM 20 N1 A B 8 -6.865 37.340 2.783 1.00 35.89 N
ATOM 21 C2 A B 8 -7.379 37.092 1.568 1.00 36.67 C
ATOM 22 N3 A B 8 -7.143 36.072 0.734 1.00 36.15 N
ATOM 23 C4 A B 8 -6.250 35.218 1.264 1.00 36.09 C
ATOM 24 P G B 9 -6.959 33.313 -4.985 1.00 40.12 P
ATOM 25 OP1 G B 9 -6.536 32.041 -5.613 1.00 43.99 O
ATOM 26 OP2 G B 9 -6.169 34.550 -5.234 1.00 43.20 O
ATOM 27 O5' G B 9 -8.461 33.726 -5.352 1.00 40.93 O
TER
Atoms:
C2: (-1.635,36.329,2.313)
OP1: (-2.059,33.990,-4.922)
OP2: (-3.024,35.919,-3.545)
C4: (-3.266,37.600,1.255)
O5': (-1.606,34.193,-2.489)
C3': (-1.348,32.665,-0.074)
C1': (-0.462,34.512,1.109)
O4': (0.155,34.482,-0.167)
C5': (-0.379,33.493,-2.305)
P: (-1.909,34.980,-3.834)
O2: (-0.961,36.042,3.309)
C4': (-0.154,33.227,-0.835)
C2': (-1.074,33.131,1.356)
O2': (-0.180,32.312,2.086)
N1: (-1.448,35.606,1.128)
N3: (-2.548,37.320,2.344)
N4: (-4.169,38.576,1.341)
C6: (-2.181,35.911,0.013)
C5: (-3.093,36.888,0.033)
O3': (-1.408,31.247,-0.189)
OP1: (-2.059,33.990,-4.922)
OP2: (-3.024,35.919,-3.545)
C4: (-3.266,37.600,1.255)
O5': (-1.606,34.193,-2.489)
C3': (-1.348,32.665,-0.074)
C1': (-0.462,34.512,1.109)
O4': (0.155,34.482,-0.167)
C5': (-0.379,33.493,-2.305)
P: (-1.909,34.980,-3.834)
O2: (-0.961,36.042,3.309)
C4': (-0.154,33.227,-0.835)
C2': (-1.074,33.131,1.356)
O2': (-0.180,32.312,2.086)
N1: (-1.448,35.606,1.128)
N3: (-2.548,37.320,2.344)
N4: (-4.169,38.576,1.341)
C6: (-2.181,35.911,0.013)
C5: (-3.093,36.888,0.033)
O3': (-1.408,31.247,-0.189)
OP1: (-3.203,30.638,1.437)
OP2: (-2.715,29.122,-0.581)
C3': (-5.709,32.745,-2.774)
C1': (-6.143,33.574,-0.627)
C5': (-4.813,30.676,-1.641)
O4': (-6.405,32.188,-0.583)
C8: (-4.887,33.534,1.611)
O2': (-5.324,35.137,-2.271)
C6: (-5.970,36.465,3.294)
C5: (-5.629,35.327,2.499)
C4: (-6.250,35.218,1.264)
P: (-2.812,30.487,0.013)
C4': (-6.010,31.572,-1.849)
C2': (-5.208,33.814,-1.803)
C2: (-7.379,37.092,1.568)
N1: (-6.865,37.340,2.783)
N3: (-7.143,36.072,0.734)
N6: (-5.461,36.720,4.505)
N7: (-4.770,34.252,2.707)
N9: (-5.761,34.064,0.695)
O5': (-3.821,31.332,-0.872)
O3': (-6.924,33.122,-3.405)
OP2: (-2.715,29.122,-0.581)
C3': (-5.709,32.745,-2.774)
C1': (-6.143,33.574,-0.627)
C5': (-4.813,30.676,-1.641)
O4': (-6.405,32.188,-0.583)
C8: (-4.887,33.534,1.611)
O2': (-5.324,35.137,-2.271)
C6: (-5.970,36.465,3.294)
C5: (-5.629,35.327,2.499)
C4: (-6.250,35.218,1.264)
P: (-2.812,30.487,0.013)
C4': (-6.010,31.572,-1.849)
C2': (-5.208,33.814,-1.803)
C2: (-7.379,37.092,1.568)
N1: (-6.865,37.340,2.783)
N3: (-7.143,36.072,0.734)
N6: (-5.461,36.720,4.505)
N7: (-4.770,34.252,2.707)
N9: (-5.761,34.064,0.695)
O5': (-3.821,31.332,-0.872)
O3': (-6.924,33.122,-3.405)
Image (generated by PyMOL):