Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01952:01953
Extra
PDB:
ATOM 1 O3' G A1951 103.340 112.356 107.656 1.00 51.23 O
ATOM 2 P C A1952 101.783 112.194 108.035 1.00 51.78 P
ATOM 3 OP1 C A1952 101.054 113.173 107.195 1.00 49.66 O
ATOM 4 OP2 C A1952 101.643 112.250 109.512 1.00 50.28 O
ATOM 5 O5' C A1952 101.378 110.729 107.540 1.00 53.65 O
ATOM 6 C5' C A1952 101.426 109.591 108.434 1.00 53.37 C
ATOM 7 C4' C A1952 100.194 108.717 108.266 1.00 53.97 C
ATOM 8 O4' C A1952 99.000 109.459 108.634 1.00 54.51 O
ATOM 9 C3' C A1952 99.884 108.205 106.868 1.00 54.80 C
ATOM 10 O3' C A1952 100.651 107.052 106.545 1.00 58.56 O
ATOM 11 C2' C A1952 98.402 107.868 106.970 1.00 53.82 C
ATOM 12 O2' C A1952 98.165 106.625 107.597 1.00 53.01 O
ATOM 13 C1' C A1952 97.894 108.993 107.874 1.00 53.19 C
ATOM 14 N1 C A1952 97.319 110.124 107.120 1.00 54.00 N
ATOM 15 C2 C A1952 95.940 110.134 106.858 1.00 54.10 C
ATOM 16 O2 C A1952 95.237 109.199 107.273 1.00 55.96 O
ATOM 17 N3 C A1952 95.409 111.159 106.156 1.00 54.64 N
ATOM 18 C4 C A1952 96.194 112.149 105.722 1.00 54.82 C
ATOM 19 N4 C A1952 95.627 113.143 105.035 1.00 54.49 N
ATOM 20 C5 C A1952 97.596 112.165 105.975 1.00 54.28 C
ATOM 21 C6 C A1952 98.111 111.146 106.672 1.00 53.61 C
ATOM 22 P A A1953 101.077 106.779 105.016 1.00 61.09 P
ATOM 23 OP1 A A1953 99.861 106.534 104.191 1.00 60.94 O
ATOM 24 OP2 A A1953 102.171 105.769 105.031 1.00 61.94 O
ATOM 25 O5' A A1953 101.707 108.164 104.558 1.00 59.88 O
TER
ATOM 1 O3' C B1952 100.651 107.052 106.545 1.00 58.56 O
ATOM 2 P A B1953 101.077 106.779 105.016 1.00 61.09 P
ATOM 3 OP1 A B1953 99.861 106.534 104.191 1.00 60.94 O
ATOM 4 OP2 A B1953 102.171 105.769 105.031 1.00 61.94 O
ATOM 5 O5' A B1953 101.707 108.164 104.558 1.00 59.88 O
ATOM 6 C5' A B1953 102.400 108.278 103.314 1.00 56.84 C
ATOM 7 C4' A B1953 102.172 109.643 102.726 1.00 56.04 C
ATOM 8 O4' A B1953 100.815 109.746 102.212 1.00 56.04 O
ATOM 9 C3' A B1953 102.346 110.806 103.695 1.00 54.93 C
ATOM 10 O3' A B1953 102.877 111.897 102.975 1.00 54.58 O
ATOM 11 C2' A B1953 100.910 111.124 104.103 1.00 54.77 C
ATOM 12 O2' A B1953 100.747 112.468 104.515 1.00 53.43 O
ATOM 13 C1' A B1953 100.174 110.863 102.792 1.00 54.85 C
ATOM 14 N9 A B1953 98.745 110.570 102.910 1.00 55.41 N
ATOM 15 C8 A B1953 98.131 109.478 103.475 1.00 55.74 C
ATOM 16 N7 A B1953 96.822 109.507 103.389 1.00 55.89 N
ATOM 17 C5 A B1953 96.557 110.701 102.730 1.00 56.35 C
ATOM 18 C6 A B1953 95.357 111.323 102.333 1.00 57.09 C
ATOM 19 N6 A B1953 94.143 110.814 102.557 1.00 58.87 N
ATOM 20 N1 A B1953 95.447 112.509 101.694 1.00 56.49 N
ATOM 21 C2 A B1953 96.654 113.027 101.481 1.00 55.51 C
ATOM 22 N3 A B1953 97.847 112.545 101.808 1.00 56.21 N
ATOM 23 C4 A B1953 97.729 111.365 102.436 1.00 55.45 C
ATOM 24 P U B1954 104.268 112.548 103.425 1.00 53.96 P
ATOM 25 OP1 U B1954 105.368 111.812 102.745 1.00 51.51 O
ATOM 26 OP2 U B1954 104.281 112.688 104.898 1.00 54.58 O
ATOM 27 O5' U B1954 104.146 114.021 102.847 1.00 52.93 O
TER
ATOM 2 P C A1952 101.783 112.194 108.035 1.00 51.78 P
ATOM 3 OP1 C A1952 101.054 113.173 107.195 1.00 49.66 O
ATOM 4 OP2 C A1952 101.643 112.250 109.512 1.00 50.28 O
ATOM 5 O5' C A1952 101.378 110.729 107.540 1.00 53.65 O
ATOM 6 C5' C A1952 101.426 109.591 108.434 1.00 53.37 C
ATOM 7 C4' C A1952 100.194 108.717 108.266 1.00 53.97 C
ATOM 8 O4' C A1952 99.000 109.459 108.634 1.00 54.51 O
ATOM 9 C3' C A1952 99.884 108.205 106.868 1.00 54.80 C
ATOM 10 O3' C A1952 100.651 107.052 106.545 1.00 58.56 O
ATOM 11 C2' C A1952 98.402 107.868 106.970 1.00 53.82 C
ATOM 12 O2' C A1952 98.165 106.625 107.597 1.00 53.01 O
ATOM 13 C1' C A1952 97.894 108.993 107.874 1.00 53.19 C
ATOM 14 N1 C A1952 97.319 110.124 107.120 1.00 54.00 N
ATOM 15 C2 C A1952 95.940 110.134 106.858 1.00 54.10 C
ATOM 16 O2 C A1952 95.237 109.199 107.273 1.00 55.96 O
ATOM 17 N3 C A1952 95.409 111.159 106.156 1.00 54.64 N
ATOM 18 C4 C A1952 96.194 112.149 105.722 1.00 54.82 C
ATOM 19 N4 C A1952 95.627 113.143 105.035 1.00 54.49 N
ATOM 20 C5 C A1952 97.596 112.165 105.975 1.00 54.28 C
ATOM 21 C6 C A1952 98.111 111.146 106.672 1.00 53.61 C
ATOM 22 P A A1953 101.077 106.779 105.016 1.00 61.09 P
ATOM 23 OP1 A A1953 99.861 106.534 104.191 1.00 60.94 O
ATOM 24 OP2 A A1953 102.171 105.769 105.031 1.00 61.94 O
ATOM 25 O5' A A1953 101.707 108.164 104.558 1.00 59.88 O
TER
ATOM 1 O3' C B1952 100.651 107.052 106.545 1.00 58.56 O
ATOM 2 P A B1953 101.077 106.779 105.016 1.00 61.09 P
ATOM 3 OP1 A B1953 99.861 106.534 104.191 1.00 60.94 O
ATOM 4 OP2 A B1953 102.171 105.769 105.031 1.00 61.94 O
ATOM 5 O5' A B1953 101.707 108.164 104.558 1.00 59.88 O
ATOM 6 C5' A B1953 102.400 108.278 103.314 1.00 56.84 C
ATOM 7 C4' A B1953 102.172 109.643 102.726 1.00 56.04 C
ATOM 8 O4' A B1953 100.815 109.746 102.212 1.00 56.04 O
ATOM 9 C3' A B1953 102.346 110.806 103.695 1.00 54.93 C
ATOM 10 O3' A B1953 102.877 111.897 102.975 1.00 54.58 O
ATOM 11 C2' A B1953 100.910 111.124 104.103 1.00 54.77 C
ATOM 12 O2' A B1953 100.747 112.468 104.515 1.00 53.43 O
ATOM 13 C1' A B1953 100.174 110.863 102.792 1.00 54.85 C
ATOM 14 N9 A B1953 98.745 110.570 102.910 1.00 55.41 N
ATOM 15 C8 A B1953 98.131 109.478 103.475 1.00 55.74 C
ATOM 16 N7 A B1953 96.822 109.507 103.389 1.00 55.89 N
ATOM 17 C5 A B1953 96.557 110.701 102.730 1.00 56.35 C
ATOM 18 C6 A B1953 95.357 111.323 102.333 1.00 57.09 C
ATOM 19 N6 A B1953 94.143 110.814 102.557 1.00 58.87 N
ATOM 20 N1 A B1953 95.447 112.509 101.694 1.00 56.49 N
ATOM 21 C2 A B1953 96.654 113.027 101.481 1.00 55.51 C
ATOM 22 N3 A B1953 97.847 112.545 101.808 1.00 56.21 N
ATOM 23 C4 A B1953 97.729 111.365 102.436 1.00 55.45 C
ATOM 24 P U B1954 104.268 112.548 103.425 1.00 53.96 P
ATOM 25 OP1 U B1954 105.368 111.812 102.745 1.00 51.51 O
ATOM 26 OP2 U B1954 104.281 112.688 104.898 1.00 54.58 O
ATOM 27 O5' U B1954 104.146 114.021 102.847 1.00 52.93 O
TER
Atoms:
C2: (95.940,110.134,106.858)
OP1: (101.054,113.173,107.195)
OP2: (101.643,112.250,109.512)
C4: (96.194,112.149,105.722)
O5': (101.378,110.729,107.540)
C3': (99.884,108.205,106.868)
C1': (97.894,108.993,107.874)
O4': (99.000,109.459,108.634)
C5': (101.426,109.591,108.434)
P: (101.783,112.194,108.035)
O2: (95.237,109.199,107.273)
C4': (100.194,108.717,108.266)
C2': (98.402,107.868,106.970)
O2': (98.165,106.625,107.597)
N1: (97.319,110.124,107.120)
N3: (95.409,111.159,106.156)
N4: (95.627,113.143,105.035)
C6: (98.111,111.146,106.672)
C5: (97.596,112.165,105.975)
O3': (100.651,107.052,106.545)
OP1: (101.054,113.173,107.195)
OP2: (101.643,112.250,109.512)
C4: (96.194,112.149,105.722)
O5': (101.378,110.729,107.540)
C3': (99.884,108.205,106.868)
C1': (97.894,108.993,107.874)
O4': (99.000,109.459,108.634)
C5': (101.426,109.591,108.434)
P: (101.783,112.194,108.035)
O2: (95.237,109.199,107.273)
C4': (100.194,108.717,108.266)
C2': (98.402,107.868,106.970)
O2': (98.165,106.625,107.597)
N1: (97.319,110.124,107.120)
N3: (95.409,111.159,106.156)
N4: (95.627,113.143,105.035)
C6: (98.111,111.146,106.672)
C5: (97.596,112.165,105.975)
O3': (100.651,107.052,106.545)
OP1: (99.861,106.534,104.191)
OP2: (102.171,105.769,105.031)
C3': (102.346,110.806,103.695)
C1': (100.174,110.863,102.792)
C5': (102.400,108.278,103.314)
O4': (100.815,109.746,102.212)
C8: (98.131,109.478,103.475)
O2': (100.747,112.468,104.515)
C6: (95.357,111.323,102.333)
C5: (96.557,110.701,102.730)
C4: (97.729,111.365,102.436)
P: (101.077,106.779,105.016)
C4': (102.172,109.643,102.726)
C2': (100.910,111.124,104.103)
C2: (96.654,113.027,101.481)
N1: (95.447,112.509,101.694)
N3: (97.847,112.545,101.808)
N6: (94.143,110.814,102.557)
N7: (96.822,109.507,103.389)
N9: (98.745,110.570,102.910)
O5': (101.707,108.164,104.558)
O3': (102.877,111.897,102.975)
OP2: (102.171,105.769,105.031)
C3': (102.346,110.806,103.695)
C1': (100.174,110.863,102.792)
C5': (102.400,108.278,103.314)
O4': (100.815,109.746,102.212)
C8: (98.131,109.478,103.475)
O2': (100.747,112.468,104.515)
C6: (95.357,111.323,102.333)
C5: (96.557,110.701,102.730)
C4: (97.729,111.365,102.436)
P: (101.077,106.779,105.016)
C4': (102.172,109.643,102.726)
C2': (100.910,111.124,104.103)
C2: (96.654,113.027,101.481)
N1: (95.447,112.509,101.694)
N3: (97.847,112.545,101.808)
N6: (94.143,110.814,102.557)
N7: (96.822,109.507,103.389)
N9: (98.745,110.570,102.910)
O5': (101.707,108.164,104.558)
O3': (102.877,111.897,102.975)
Image (generated by PyMOL):