Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G12:G13
Extra
PDB:
ATOM 1 O3' G A 11 -0.278 -45.452 10.855 1.00 25.44 O
ATOM 2 P C A 12 -1.620 -45.237 11.697 1.00 23.23 P
ATOM 3 OP1 C A 12 -1.859 -46.373 12.623 1.00 20.94 O
ATOM 4 OP2 C A 12 -2.654 -44.868 10.700 1.00 26.08 O
ATOM 5 O5' C A 12 -1.286 -43.972 12.583 1.00 22.34 O
ATOM 6 C5' C A 12 -0.686 -44.114 13.855 1.00 21.91 C
ATOM 7 C4' C A 12 -0.456 -42.757 14.415 1.00 21.06 C
ATOM 8 O4' C A 12 0.744 -42.189 13.841 1.00 19.74 O
ATOM 9 C3' C A 12 -1.550 -41.779 14.037 1.00 22.42 C
ATOM 10 O3' C A 12 -2.676 -41.965 14.883 1.00 25.66 O
ATOM 11 C2' C A 12 -0.843 -40.437 14.151 1.00 22.08 C
ATOM 12 O2' C A 12 -0.764 -39.964 15.478 1.00 26.01 O
ATOM 13 C1' C A 12 0.564 -40.794 13.650 1.00 20.45 C
ATOM 14 N1 C A 12 0.780 -40.483 12.228 1.00 17.83 N
ATOM 15 C2 C A 12 1.328 -39.246 11.883 1.00 15.90 C
ATOM 16 O2 C A 12 1.690 -38.487 12.777 1.00 15.88 O
ATOM 17 N3 C A 12 1.457 -38.917 10.583 1.00 16.22 N
ATOM 18 C4 C A 12 1.089 -39.783 9.637 1.00 15.74 C
ATOM 19 N4 C A 12 1.212 -39.408 8.362 1.00 12.33 N
ATOM 20 C5 C A 12 0.570 -41.071 9.957 1.00 16.26 C
ATOM 21 C6 C A 12 0.432 -41.376 11.255 1.00 17.86 C
ATOM 22 P A A 13 -4.113 -41.417 14.430 1.00 27.85 P
ATOM 23 OP1 A A 13 -3.911 -39.974 14.155 1.00 28.77 O
ATOM 24 OP2 A A 13 -5.128 -41.848 15.422 1.00 25.56 O
ATOM 25 O5' A A 13 -4.405 -42.143 13.045 1.00 24.21 O
TER
ATOM 1 O3' C B 12 -2.676 -41.965 14.883 1.00 25.66 O
ATOM 2 P A B 13 -4.113 -41.417 14.430 1.00 27.85 P
ATOM 3 OP1 A B 13 -3.911 -39.974 14.155 1.00 28.77 O
ATOM 4 OP2 A B 13 -5.128 -41.848 15.422 1.00 25.56 O
ATOM 5 O5' A B 13 -4.405 -42.143 13.045 1.00 24.21 O
ATOM 6 C5' A B 13 -5.599 -41.868 12.329 1.00 22.06 C
ATOM 7 C4' A B 13 -5.296 -41.659 10.866 1.00 21.01 C
ATOM 8 O4' A B 13 -4.735 -40.343 10.621 1.00 20.28 O
ATOM 9 C3' A B 13 -4.308 -42.642 10.258 1.00 20.79 C
ATOM 10 O3' A B 13 -4.672 -42.811 8.904 1.00 20.87 O
ATOM 11 C2' A B 13 -3.001 -41.872 10.310 1.00 20.34 C
ATOM 12 O2' A B 13 -2.100 -42.325 9.329 1.00 23.73 O
ATOM 13 C1' A B 13 -3.490 -40.473 9.965 1.00 20.20 C
ATOM 14 N9 A B 13 -2.645 -39.376 10.419 1.00 21.69 N
ATOM 15 C8 A B 13 -2.327 -39.044 11.712 1.00 23.62 C
ATOM 16 N7 A B 13 -1.659 -37.919 11.818 1.00 25.79 N
ATOM 17 C5 A B 13 -1.505 -37.497 10.504 1.00 23.31 C
ATOM 18 C6 A B 13 -0.925 -36.352 9.942 1.00 23.98 C
ATOM 19 N6 A B 13 -0.388 -35.372 10.661 1.00 24.90 N
ATOM 20 N1 A B 13 -0.929 -36.240 8.598 1.00 24.70 N
ATOM 21 C2 A B 13 -1.491 -37.213 7.878 1.00 22.41 C
ATOM 22 N3 A B 13 -2.087 -38.328 8.290 1.00 21.80 N
ATOM 23 C4 A B 13 -2.067 -38.409 9.630 1.00 21.96 C
ATOM 24 P U B 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 25 OP1 U B 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 26 OP2 U B 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 27 O5' U B 14 -6.014 -43.834 7.057 1.00 19.42 O
TER
ATOM 2 P C A 12 -1.620 -45.237 11.697 1.00 23.23 P
ATOM 3 OP1 C A 12 -1.859 -46.373 12.623 1.00 20.94 O
ATOM 4 OP2 C A 12 -2.654 -44.868 10.700 1.00 26.08 O
ATOM 5 O5' C A 12 -1.286 -43.972 12.583 1.00 22.34 O
ATOM 6 C5' C A 12 -0.686 -44.114 13.855 1.00 21.91 C
ATOM 7 C4' C A 12 -0.456 -42.757 14.415 1.00 21.06 C
ATOM 8 O4' C A 12 0.744 -42.189 13.841 1.00 19.74 O
ATOM 9 C3' C A 12 -1.550 -41.779 14.037 1.00 22.42 C
ATOM 10 O3' C A 12 -2.676 -41.965 14.883 1.00 25.66 O
ATOM 11 C2' C A 12 -0.843 -40.437 14.151 1.00 22.08 C
ATOM 12 O2' C A 12 -0.764 -39.964 15.478 1.00 26.01 O
ATOM 13 C1' C A 12 0.564 -40.794 13.650 1.00 20.45 C
ATOM 14 N1 C A 12 0.780 -40.483 12.228 1.00 17.83 N
ATOM 15 C2 C A 12 1.328 -39.246 11.883 1.00 15.90 C
ATOM 16 O2 C A 12 1.690 -38.487 12.777 1.00 15.88 O
ATOM 17 N3 C A 12 1.457 -38.917 10.583 1.00 16.22 N
ATOM 18 C4 C A 12 1.089 -39.783 9.637 1.00 15.74 C
ATOM 19 N4 C A 12 1.212 -39.408 8.362 1.00 12.33 N
ATOM 20 C5 C A 12 0.570 -41.071 9.957 1.00 16.26 C
ATOM 21 C6 C A 12 0.432 -41.376 11.255 1.00 17.86 C
ATOM 22 P A A 13 -4.113 -41.417 14.430 1.00 27.85 P
ATOM 23 OP1 A A 13 -3.911 -39.974 14.155 1.00 28.77 O
ATOM 24 OP2 A A 13 -5.128 -41.848 15.422 1.00 25.56 O
ATOM 25 O5' A A 13 -4.405 -42.143 13.045 1.00 24.21 O
TER
ATOM 1 O3' C B 12 -2.676 -41.965 14.883 1.00 25.66 O
ATOM 2 P A B 13 -4.113 -41.417 14.430 1.00 27.85 P
ATOM 3 OP1 A B 13 -3.911 -39.974 14.155 1.00 28.77 O
ATOM 4 OP2 A B 13 -5.128 -41.848 15.422 1.00 25.56 O
ATOM 5 O5' A B 13 -4.405 -42.143 13.045 1.00 24.21 O
ATOM 6 C5' A B 13 -5.599 -41.868 12.329 1.00 22.06 C
ATOM 7 C4' A B 13 -5.296 -41.659 10.866 1.00 21.01 C
ATOM 8 O4' A B 13 -4.735 -40.343 10.621 1.00 20.28 O
ATOM 9 C3' A B 13 -4.308 -42.642 10.258 1.00 20.79 C
ATOM 10 O3' A B 13 -4.672 -42.811 8.904 1.00 20.87 O
ATOM 11 C2' A B 13 -3.001 -41.872 10.310 1.00 20.34 C
ATOM 12 O2' A B 13 -2.100 -42.325 9.329 1.00 23.73 O
ATOM 13 C1' A B 13 -3.490 -40.473 9.965 1.00 20.20 C
ATOM 14 N9 A B 13 -2.645 -39.376 10.419 1.00 21.69 N
ATOM 15 C8 A B 13 -2.327 -39.044 11.712 1.00 23.62 C
ATOM 16 N7 A B 13 -1.659 -37.919 11.818 1.00 25.79 N
ATOM 17 C5 A B 13 -1.505 -37.497 10.504 1.00 23.31 C
ATOM 18 C6 A B 13 -0.925 -36.352 9.942 1.00 23.98 C
ATOM 19 N6 A B 13 -0.388 -35.372 10.661 1.00 24.90 N
ATOM 20 N1 A B 13 -0.929 -36.240 8.598 1.00 24.70 N
ATOM 21 C2 A B 13 -1.491 -37.213 7.878 1.00 22.41 C
ATOM 22 N3 A B 13 -2.087 -38.328 8.290 1.00 21.80 N
ATOM 23 C4 A B 13 -2.067 -38.409 9.630 1.00 21.96 C
ATOM 24 P U B 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 25 OP1 U B 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 26 OP2 U B 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 27 O5' U B 14 -6.014 -43.834 7.057 1.00 19.42 O
TER
Atoms:
C2: (1.328,-39.246,11.883)
OP1: (-1.859,-46.373,12.623)
OP2: (-2.654,-44.868,10.700)
C4: (1.089,-39.783,9.637)
O5': (-1.286,-43.972,12.583)
C3': (-1.550,-41.779,14.037)
C1': (0.564,-40.794,13.650)
O4': (0.744,-42.189,13.841)
C5': (-0.686,-44.114,13.855)
P: (-1.620,-45.237,11.697)
O2: (1.690,-38.487,12.777)
C4': (-0.456,-42.757,14.415)
C2': (-0.843,-40.437,14.151)
O2': (-0.764,-39.964,15.478)
N1: (0.780,-40.483,12.228)
N3: (1.457,-38.917,10.583)
N4: (1.212,-39.408,8.362)
C6: (0.432,-41.376,11.255)
C5: (0.570,-41.071,9.957)
O3': (-2.676,-41.965,14.883)
OP1: (-1.859,-46.373,12.623)
OP2: (-2.654,-44.868,10.700)
C4: (1.089,-39.783,9.637)
O5': (-1.286,-43.972,12.583)
C3': (-1.550,-41.779,14.037)
C1': (0.564,-40.794,13.650)
O4': (0.744,-42.189,13.841)
C5': (-0.686,-44.114,13.855)
P: (-1.620,-45.237,11.697)
O2: (1.690,-38.487,12.777)
C4': (-0.456,-42.757,14.415)
C2': (-0.843,-40.437,14.151)
O2': (-0.764,-39.964,15.478)
N1: (0.780,-40.483,12.228)
N3: (1.457,-38.917,10.583)
N4: (1.212,-39.408,8.362)
C6: (0.432,-41.376,11.255)
C5: (0.570,-41.071,9.957)
O3': (-2.676,-41.965,14.883)
OP1: (-3.911,-39.974,14.155)
OP2: (-5.128,-41.848,15.422)
C3': (-4.308,-42.642,10.258)
C1': (-3.490,-40.473,9.965)
C5': (-5.599,-41.868,12.329)
O4': (-4.735,-40.343,10.621)
C8: (-2.327,-39.044,11.712)
O2': (-2.100,-42.325,9.329)
C6: (-0.925,-36.352,9.942)
C5: (-1.505,-37.497,10.504)
C4: (-2.067,-38.409,9.630)
P: (-4.113,-41.417,14.430)
C4': (-5.296,-41.659,10.866)
C2': (-3.001,-41.872,10.310)
C2: (-1.491,-37.213,7.878)
N1: (-0.929,-36.240,8.598)
N3: (-2.087,-38.328,8.290)
N6: (-0.388,-35.372,10.661)
N7: (-1.659,-37.919,11.818)
N9: (-2.645,-39.376,10.419)
O5': (-4.405,-42.143,13.045)
O3': (-4.672,-42.811,8.904)
OP2: (-5.128,-41.848,15.422)
C3': (-4.308,-42.642,10.258)
C1': (-3.490,-40.473,9.965)
C5': (-5.599,-41.868,12.329)
O4': (-4.735,-40.343,10.621)
C8: (-2.327,-39.044,11.712)
O2': (-2.100,-42.325,9.329)
C6: (-0.925,-36.352,9.942)
C5: (-1.505,-37.497,10.504)
C4: (-2.067,-38.409,9.630)
P: (-4.113,-41.417,14.430)
C4': (-5.296,-41.659,10.866)
C2': (-3.001,-41.872,10.310)
C2: (-1.491,-37.213,7.878)
N1: (-0.929,-36.240,8.598)
N3: (-2.087,-38.328,8.290)
N6: (-0.388,-35.372,10.661)
N7: (-1.659,-37.919,11.818)
N9: (-2.645,-39.376,10.419)
O5': (-4.405,-42.143,13.045)
O3': (-4.672,-42.811,8.904)
Image (generated by PyMOL):