Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5H:52119:52120
Extra
PDB:
ATOM 1 O3' G A2118 187.014 -0.170 239.934 1.00 45.70 O
ATOM 2 P C A2119 185.519 0.098 240.506 1.00 44.20 P
ATOM 3 OP1 C A2119 184.737 0.708 239.412 1.00 44.14 O
ATOM 4 OP2 C A2119 185.620 0.839 241.789 1.00 44.07 O
ATOM 5 O5' C A2119 185.013 -1.381 240.779 1.00 44.19 O
ATOM 6 C5' C A2119 185.382 -2.046 241.977 1.00 44.19 C
ATOM 7 C4' C A2119 184.210 -2.731 242.589 1.00 44.02 C
ATOM 8 O4' C A2119 183.151 -1.785 242.796 1.00 43.79 O
ATOM 9 C3' C A2119 183.584 -3.778 241.737 1.00 44.07 C
ATOM 10 O3' C A2119 184.298 -4.974 241.815 1.00 44.25 O
ATOM 11 C2' C A2119 182.181 -3.867 242.296 1.00 43.84 C
ATOM 12 O2' C A2119 182.180 -4.626 243.494 1.00 43.81 O
ATOM 13 C1' C A2119 181.913 -2.410 242.653 1.00 43.67 C
ATOM 14 N1 C A2119 181.162 -1.697 241.619 1.00 43.60 N
ATOM 15 C2 C A2119 179.812 -1.713 241.777 1.00 43.42 C
ATOM 16 O2 C A2119 179.486 -2.353 242.779 1.00 43.35 O
ATOM 17 N3 C A2119 178.971 -1.092 240.876 1.00 43.35 N
ATOM 18 C4 C A2119 179.529 -0.443 239.838 1.00 43.47 C
ATOM 19 N4 C A2119 178.736 0.175 238.965 1.00 43.41 N
ATOM 20 C5 C A2119 180.943 -0.397 239.654 1.00 43.66 C
ATOM 21 C6 C A2119 181.710 -1.030 240.561 1.00 43.72 C
ATOM 22 P A A2120 184.634 -5.776 240.492 1.00 55.51 P
ATOM 23 OP1 A A2120 183.378 -6.439 240.071 1.00 55.43 O
ATOM 24 OP2 A A2120 185.841 -6.587 240.773 1.00 55.74 O
ATOM 25 O5' A A2120 184.983 -4.657 239.464 1.00 55.57 O
TER
ATOM 1 O3' C B2119 184.298 -4.974 241.815 1.00 44.25 O
ATOM 2 P A B2120 184.634 -5.776 240.492 1.00 55.51 P
ATOM 3 OP1 A B2120 183.378 -6.439 240.071 1.00 55.43 O
ATOM 4 OP2 A B2120 185.841 -6.587 240.773 1.00 55.74 O
ATOM 5 O5' A B2120 184.983 -4.657 239.464 1.00 55.57 O
ATOM 6 C5' A B2120 185.537 -5.020 238.233 1.00 55.79 C
ATOM 7 C4' A B2120 184.959 -4.219 237.138 1.00 55.75 C
ATOM 8 O4' A B2120 183.540 -4.474 237.047 1.00 55.57 O
ATOM 9 C3' A B2120 185.123 -2.734 237.295 1.00 55.65 C
ATOM 10 O3' A B2120 185.523 -2.230 236.049 1.00 55.81 O
ATOM 11 C2' A B2120 183.713 -2.230 237.667 1.00 55.37 C
ATOM 12 O2' A B2120 183.395 -0.932 237.215 1.00 55.29 O
ATOM 13 C1' A B2120 182.829 -3.255 237.004 1.00 55.39 C
ATOM 14 N9 A B2120 181.554 -3.468 237.672 1.00 55.16 N
ATOM 15 C8 A B2120 181.383 -4.264 238.765 1.00 55.09 C
ATOM 16 N7 A B2120 180.135 -4.323 239.120 1.00 54.90 N
ATOM 17 C5 A B2120 179.485 -3.549 238.195 1.00 54.85 C
ATOM 18 C6 A B2120 178.148 -3.256 238.033 1.00 54.68 C
ATOM 19 N6 A B2120 177.254 -3.729 238.906 1.00 54.53 N
ATOM 20 N1 A B2120 177.776 -2.458 236.987 1.00 54.69 N
ATOM 21 C2 A B2120 178.712 -1.976 236.178 1.00 54.85 C
ATOM 22 N3 A B2120 180.010 -2.214 236.262 1.00 55.02 N
ATOM 23 C4 A B2120 180.332 -3.013 237.288 1.00 55.01 C
ATOM 24 P U B2121 187.029 -1.807 235.855 1.00 43.74 P
ATOM 25 OP1 U B2121 187.737 -2.923 235.211 1.00 44.00 O
ATOM 26 OP2 U B2121 187.498 -1.335 237.157 1.00 43.65 O
ATOM 27 O5' U B2121 186.905 -0.558 234.909 1.00 43.75 O
TER
ATOM 2 P C A2119 185.519 0.098 240.506 1.00 44.20 P
ATOM 3 OP1 C A2119 184.737 0.708 239.412 1.00 44.14 O
ATOM 4 OP2 C A2119 185.620 0.839 241.789 1.00 44.07 O
ATOM 5 O5' C A2119 185.013 -1.381 240.779 1.00 44.19 O
ATOM 6 C5' C A2119 185.382 -2.046 241.977 1.00 44.19 C
ATOM 7 C4' C A2119 184.210 -2.731 242.589 1.00 44.02 C
ATOM 8 O4' C A2119 183.151 -1.785 242.796 1.00 43.79 O
ATOM 9 C3' C A2119 183.584 -3.778 241.737 1.00 44.07 C
ATOM 10 O3' C A2119 184.298 -4.974 241.815 1.00 44.25 O
ATOM 11 C2' C A2119 182.181 -3.867 242.296 1.00 43.84 C
ATOM 12 O2' C A2119 182.180 -4.626 243.494 1.00 43.81 O
ATOM 13 C1' C A2119 181.913 -2.410 242.653 1.00 43.67 C
ATOM 14 N1 C A2119 181.162 -1.697 241.619 1.00 43.60 N
ATOM 15 C2 C A2119 179.812 -1.713 241.777 1.00 43.42 C
ATOM 16 O2 C A2119 179.486 -2.353 242.779 1.00 43.35 O
ATOM 17 N3 C A2119 178.971 -1.092 240.876 1.00 43.35 N
ATOM 18 C4 C A2119 179.529 -0.443 239.838 1.00 43.47 C
ATOM 19 N4 C A2119 178.736 0.175 238.965 1.00 43.41 N
ATOM 20 C5 C A2119 180.943 -0.397 239.654 1.00 43.66 C
ATOM 21 C6 C A2119 181.710 -1.030 240.561 1.00 43.72 C
ATOM 22 P A A2120 184.634 -5.776 240.492 1.00 55.51 P
ATOM 23 OP1 A A2120 183.378 -6.439 240.071 1.00 55.43 O
ATOM 24 OP2 A A2120 185.841 -6.587 240.773 1.00 55.74 O
ATOM 25 O5' A A2120 184.983 -4.657 239.464 1.00 55.57 O
TER
ATOM 1 O3' C B2119 184.298 -4.974 241.815 1.00 44.25 O
ATOM 2 P A B2120 184.634 -5.776 240.492 1.00 55.51 P
ATOM 3 OP1 A B2120 183.378 -6.439 240.071 1.00 55.43 O
ATOM 4 OP2 A B2120 185.841 -6.587 240.773 1.00 55.74 O
ATOM 5 O5' A B2120 184.983 -4.657 239.464 1.00 55.57 O
ATOM 6 C5' A B2120 185.537 -5.020 238.233 1.00 55.79 C
ATOM 7 C4' A B2120 184.959 -4.219 237.138 1.00 55.75 C
ATOM 8 O4' A B2120 183.540 -4.474 237.047 1.00 55.57 O
ATOM 9 C3' A B2120 185.123 -2.734 237.295 1.00 55.65 C
ATOM 10 O3' A B2120 185.523 -2.230 236.049 1.00 55.81 O
ATOM 11 C2' A B2120 183.713 -2.230 237.667 1.00 55.37 C
ATOM 12 O2' A B2120 183.395 -0.932 237.215 1.00 55.29 O
ATOM 13 C1' A B2120 182.829 -3.255 237.004 1.00 55.39 C
ATOM 14 N9 A B2120 181.554 -3.468 237.672 1.00 55.16 N
ATOM 15 C8 A B2120 181.383 -4.264 238.765 1.00 55.09 C
ATOM 16 N7 A B2120 180.135 -4.323 239.120 1.00 54.90 N
ATOM 17 C5 A B2120 179.485 -3.549 238.195 1.00 54.85 C
ATOM 18 C6 A B2120 178.148 -3.256 238.033 1.00 54.68 C
ATOM 19 N6 A B2120 177.254 -3.729 238.906 1.00 54.53 N
ATOM 20 N1 A B2120 177.776 -2.458 236.987 1.00 54.69 N
ATOM 21 C2 A B2120 178.712 -1.976 236.178 1.00 54.85 C
ATOM 22 N3 A B2120 180.010 -2.214 236.262 1.00 55.02 N
ATOM 23 C4 A B2120 180.332 -3.013 237.288 1.00 55.01 C
ATOM 24 P U B2121 187.029 -1.807 235.855 1.00 43.74 P
ATOM 25 OP1 U B2121 187.737 -2.923 235.211 1.00 44.00 O
ATOM 26 OP2 U B2121 187.498 -1.335 237.157 1.00 43.65 O
ATOM 27 O5' U B2121 186.905 -0.558 234.909 1.00 43.75 O
TER
Atoms:
C2: (179.812,-1.713,241.777)
OP1: (184.737,0.708,239.412)
OP2: (185.620,0.839,241.789)
C4: (179.529,-0.443,239.838)
O5': (185.013,-1.381,240.779)
C3': (183.584,-3.778,241.737)
C1': (181.913,-2.410,242.653)
O4': (183.151,-1.785,242.796)
C5': (185.382,-2.046,241.977)
P: (185.519,0.098,240.506)
O2: (179.486,-2.353,242.779)
C4': (184.210,-2.731,242.589)
C2': (182.181,-3.867,242.296)
O2': (182.180,-4.626,243.494)
N1: (181.162,-1.697,241.619)
N3: (178.971,-1.092,240.876)
N4: (178.736,0.175,238.965)
C6: (181.710,-1.030,240.561)
C5: (180.943,-0.397,239.654)
O3': (184.298,-4.974,241.815)
OP1: (184.737,0.708,239.412)
OP2: (185.620,0.839,241.789)
C4: (179.529,-0.443,239.838)
O5': (185.013,-1.381,240.779)
C3': (183.584,-3.778,241.737)
C1': (181.913,-2.410,242.653)
O4': (183.151,-1.785,242.796)
C5': (185.382,-2.046,241.977)
P: (185.519,0.098,240.506)
O2: (179.486,-2.353,242.779)
C4': (184.210,-2.731,242.589)
C2': (182.181,-3.867,242.296)
O2': (182.180,-4.626,243.494)
N1: (181.162,-1.697,241.619)
N3: (178.971,-1.092,240.876)
N4: (178.736,0.175,238.965)
C6: (181.710,-1.030,240.561)
C5: (180.943,-0.397,239.654)
O3': (184.298,-4.974,241.815)
OP1: (183.378,-6.439,240.071)
OP2: (185.841,-6.587,240.773)
C3': (185.123,-2.734,237.295)
C1': (182.829,-3.255,237.004)
C5': (185.537,-5.020,238.233)
O4': (183.540,-4.474,237.047)
C8: (181.383,-4.264,238.765)
O2': (183.395,-0.932,237.215)
C6: (178.148,-3.256,238.033)
C5: (179.485,-3.549,238.195)
C4: (180.332,-3.013,237.288)
P: (184.634,-5.776,240.492)
C4': (184.959,-4.219,237.138)
C2': (183.713,-2.230,237.667)
C2: (178.712,-1.976,236.178)
N1: (177.776,-2.458,236.987)
N3: (180.010,-2.214,236.262)
N6: (177.254,-3.729,238.906)
N7: (180.135,-4.323,239.120)
N9: (181.554,-3.468,237.672)
O5': (184.983,-4.657,239.464)
O3': (185.523,-2.230,236.049)
OP2: (185.841,-6.587,240.773)
C3': (185.123,-2.734,237.295)
C1': (182.829,-3.255,237.004)
C5': (185.537,-5.020,238.233)
O4': (183.540,-4.474,237.047)
C8: (181.383,-4.264,238.765)
O2': (183.395,-0.932,237.215)
C6: (178.148,-3.256,238.033)
C5: (179.485,-3.549,238.195)
C4: (180.332,-3.013,237.288)
P: (184.634,-5.776,240.492)
C4': (184.959,-4.219,237.138)
C2': (183.713,-2.230,237.667)
C2: (178.712,-1.976,236.178)
N1: (177.776,-2.458,236.987)
N3: (180.010,-2.214,236.262)
N6: (177.254,-3.729,238.906)
N7: (180.135,-4.323,239.120)
N9: (181.554,-3.468,237.672)
O5': (184.983,-4.657,239.464)
O3': (185.523,-2.230,236.049)
Image (generated by PyMOL):