Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:C12:C13
Extra
PDB:
ATOM 1 O3' G A 11 -28.159 -38.072 -6.862 1.00 23.78 O
ATOM 2 P C A 12 -26.660 -37.663 -7.251 1.00 23.78 P
ATOM 3 OP1 C A 12 -26.098 -38.696 -8.149 1.00 20.06 O
ATOM 4 OP2 C A 12 -25.959 -37.345 -5.984 1.00 27.85 O
ATOM 5 O5' C A 12 -26.861 -36.299 -8.042 1.00 22.16 O
ATOM 6 C5' C A 12 -26.716 -36.229 -9.448 1.00 21.24 C
ATOM 7 C4' C A 12 -26.721 -34.789 -9.872 1.00 21.06 C
ATOM 8 O4' C A 12 -28.056 -34.238 -9.754 1.00 22.33 O
ATOM 9 C3' C A 12 -25.864 -33.886 -9.006 1.00 20.88 C
ATOM 10 O3' C A 12 -24.521 -33.954 -9.425 1.00 22.06 O
ATOM 11 C2' C A 12 -26.488 -32.520 -9.234 1.00 21.82 C
ATOM 12 O2' C A 12 -26.079 -31.940 -10.451 1.00 23.04 O
ATOM 13 C1' C A 12 -27.971 -32.883 -9.336 1.00 22.13 C
ATOM 14 N1 C A 12 -28.739 -32.734 -8.086 1.00 22.77 N
ATOM 15 C2 C A 12 -29.534 -31.601 -7.928 1.00 21.83 C
ATOM 16 O2 C A 12 -29.512 -30.742 -8.808 1.00 21.63 O
ATOM 17 N3 C A 12 -30.300 -31.471 -6.821 1.00 21.43 N
ATOM 18 C4 C A 12 -30.280 -32.422 -5.884 1.00 22.28 C
ATOM 19 N4 C A 12 -31.071 -32.269 -4.818 1.00 21.41 N
ATOM 20 C5 C A 12 -29.450 -33.578 -6.001 1.00 22.50 C
ATOM 21 C6 C A 12 -28.700 -33.691 -7.108 1.00 23.19 C
ATOM 22 P A A 13 -23.374 -33.393 -8.473 1.00 23.71 P
ATOM 23 OP1 A A 13 -23.571 -31.920 -8.450 1.00 23.79 O
ATOM 24 OP2 A A 13 -22.073 -33.963 -8.900 1.00 23.09 O
ATOM 25 O5' A A 13 -23.735 -34.002 -7.051 1.00 21.11 O
TER
ATOM 1 O3' C B 12 -24.521 -33.954 -9.425 1.00 22.06 O
ATOM 2 P A B 13 -23.374 -33.393 -8.473 1.00 23.71 P
ATOM 3 OP1 A B 13 -23.571 -31.920 -8.450 1.00 23.79 O
ATOM 4 OP2 A B 13 -22.073 -33.963 -8.900 1.00 23.09 O
ATOM 5 O5' A B 13 -23.735 -34.002 -7.051 1.00 21.11 O
ATOM 6 C5' A B 13 -22.764 -34.080 -6.014 1.00 17.08 C
ATOM 7 C4' A B 13 -23.454 -34.161 -4.676 1.00 15.52 C
ATOM 8 O4' A B 13 -24.152 -32.916 -4.430 1.00 16.56 O
ATOM 9 C3' A B 13 -24.519 -35.242 -4.554 1.00 12.17 C
ATOM 10 O3' A B 13 -24.658 -35.497 -3.174 1.00 8.19 O
ATOM 11 C2' A B 13 -25.768 -34.509 -5.001 1.00 12.79 C
ATOM 12 O2' A B 13 -26.927 -35.117 -4.508 1.00 15.59 O
ATOM 13 C1' A B 13 -25.540 -33.166 -4.319 1.00 14.53 C
ATOM 14 N9 A B 13 -26.229 -32.006 -4.873 1.00 15.07 N
ATOM 15 C8 A B 13 -25.941 -31.338 -6.037 1.00 17.54 C
ATOM 16 N7 A B 13 -26.646 -30.245 -6.205 1.00 18.76 N
ATOM 17 C5 A B 13 -27.473 -30.209 -5.091 1.00 15.01 C
ATOM 18 C6 A B 13 -28.423 -29.279 -4.657 1.00 14.85 C
ATOM 19 N6 A B 13 -28.688 -28.141 -5.302 1.00 18.27 N
ATOM 20 N1 A B 13 -29.084 -29.544 -3.513 1.00 13.15 N
ATOM 21 C2 A B 13 -28.776 -30.660 -2.839 1.00 15.25 C
ATOM 22 N3 A B 13 -27.878 -31.600 -3.130 1.00 14.25 N
ATOM 23 C4 A B 13 -27.253 -31.308 -4.282 1.00 14.62 C
ATOM 24 P U B 14 -24.596 -36.997 -2.620 1.00 13.76 P
ATOM 25 OP1 U B 14 -23.295 -37.600 -3.016 1.00 12.03 O
ATOM 26 OP2 U B 14 -25.868 -37.698 -2.950 1.00 11.94 O
ATOM 27 O5' U B 14 -24.553 -36.785 -1.041 1.00 17.88 O
TER
ATOM 2 P C A 12 -26.660 -37.663 -7.251 1.00 23.78 P
ATOM 3 OP1 C A 12 -26.098 -38.696 -8.149 1.00 20.06 O
ATOM 4 OP2 C A 12 -25.959 -37.345 -5.984 1.00 27.85 O
ATOM 5 O5' C A 12 -26.861 -36.299 -8.042 1.00 22.16 O
ATOM 6 C5' C A 12 -26.716 -36.229 -9.448 1.00 21.24 C
ATOM 7 C4' C A 12 -26.721 -34.789 -9.872 1.00 21.06 C
ATOM 8 O4' C A 12 -28.056 -34.238 -9.754 1.00 22.33 O
ATOM 9 C3' C A 12 -25.864 -33.886 -9.006 1.00 20.88 C
ATOM 10 O3' C A 12 -24.521 -33.954 -9.425 1.00 22.06 O
ATOM 11 C2' C A 12 -26.488 -32.520 -9.234 1.00 21.82 C
ATOM 12 O2' C A 12 -26.079 -31.940 -10.451 1.00 23.04 O
ATOM 13 C1' C A 12 -27.971 -32.883 -9.336 1.00 22.13 C
ATOM 14 N1 C A 12 -28.739 -32.734 -8.086 1.00 22.77 N
ATOM 15 C2 C A 12 -29.534 -31.601 -7.928 1.00 21.83 C
ATOM 16 O2 C A 12 -29.512 -30.742 -8.808 1.00 21.63 O
ATOM 17 N3 C A 12 -30.300 -31.471 -6.821 1.00 21.43 N
ATOM 18 C4 C A 12 -30.280 -32.422 -5.884 1.00 22.28 C
ATOM 19 N4 C A 12 -31.071 -32.269 -4.818 1.00 21.41 N
ATOM 20 C5 C A 12 -29.450 -33.578 -6.001 1.00 22.50 C
ATOM 21 C6 C A 12 -28.700 -33.691 -7.108 1.00 23.19 C
ATOM 22 P A A 13 -23.374 -33.393 -8.473 1.00 23.71 P
ATOM 23 OP1 A A 13 -23.571 -31.920 -8.450 1.00 23.79 O
ATOM 24 OP2 A A 13 -22.073 -33.963 -8.900 1.00 23.09 O
ATOM 25 O5' A A 13 -23.735 -34.002 -7.051 1.00 21.11 O
TER
ATOM 1 O3' C B 12 -24.521 -33.954 -9.425 1.00 22.06 O
ATOM 2 P A B 13 -23.374 -33.393 -8.473 1.00 23.71 P
ATOM 3 OP1 A B 13 -23.571 -31.920 -8.450 1.00 23.79 O
ATOM 4 OP2 A B 13 -22.073 -33.963 -8.900 1.00 23.09 O
ATOM 5 O5' A B 13 -23.735 -34.002 -7.051 1.00 21.11 O
ATOM 6 C5' A B 13 -22.764 -34.080 -6.014 1.00 17.08 C
ATOM 7 C4' A B 13 -23.454 -34.161 -4.676 1.00 15.52 C
ATOM 8 O4' A B 13 -24.152 -32.916 -4.430 1.00 16.56 O
ATOM 9 C3' A B 13 -24.519 -35.242 -4.554 1.00 12.17 C
ATOM 10 O3' A B 13 -24.658 -35.497 -3.174 1.00 8.19 O
ATOM 11 C2' A B 13 -25.768 -34.509 -5.001 1.00 12.79 C
ATOM 12 O2' A B 13 -26.927 -35.117 -4.508 1.00 15.59 O
ATOM 13 C1' A B 13 -25.540 -33.166 -4.319 1.00 14.53 C
ATOM 14 N9 A B 13 -26.229 -32.006 -4.873 1.00 15.07 N
ATOM 15 C8 A B 13 -25.941 -31.338 -6.037 1.00 17.54 C
ATOM 16 N7 A B 13 -26.646 -30.245 -6.205 1.00 18.76 N
ATOM 17 C5 A B 13 -27.473 -30.209 -5.091 1.00 15.01 C
ATOM 18 C6 A B 13 -28.423 -29.279 -4.657 1.00 14.85 C
ATOM 19 N6 A B 13 -28.688 -28.141 -5.302 1.00 18.27 N
ATOM 20 N1 A B 13 -29.084 -29.544 -3.513 1.00 13.15 N
ATOM 21 C2 A B 13 -28.776 -30.660 -2.839 1.00 15.25 C
ATOM 22 N3 A B 13 -27.878 -31.600 -3.130 1.00 14.25 N
ATOM 23 C4 A B 13 -27.253 -31.308 -4.282 1.00 14.62 C
ATOM 24 P U B 14 -24.596 -36.997 -2.620 1.00 13.76 P
ATOM 25 OP1 U B 14 -23.295 -37.600 -3.016 1.00 12.03 O
ATOM 26 OP2 U B 14 -25.868 -37.698 -2.950 1.00 11.94 O
ATOM 27 O5' U B 14 -24.553 -36.785 -1.041 1.00 17.88 O
TER
Atoms:
C2: (-29.534,-31.601,-7.928)
OP1: (-26.098,-38.696,-8.149)
OP2: (-25.959,-37.345,-5.984)
C4: (-30.280,-32.422,-5.884)
O5': (-26.861,-36.299,-8.042)
C3': (-25.864,-33.886,-9.006)
C1': (-27.971,-32.883,-9.336)
O4': (-28.056,-34.238,-9.754)
C5': (-26.716,-36.229,-9.448)
P: (-26.660,-37.663,-7.251)
O2: (-29.512,-30.742,-8.808)
C4': (-26.721,-34.789,-9.872)
C2': (-26.488,-32.520,-9.234)
O2': (-26.079,-31.940,-10.451)
N1: (-28.739,-32.734,-8.086)
N3: (-30.300,-31.471,-6.821)
N4: (-31.071,-32.269,-4.818)
C6: (-28.700,-33.691,-7.108)
C5: (-29.450,-33.578,-6.001)
O3': (-24.521,-33.954,-9.425)
OP1: (-26.098,-38.696,-8.149)
OP2: (-25.959,-37.345,-5.984)
C4: (-30.280,-32.422,-5.884)
O5': (-26.861,-36.299,-8.042)
C3': (-25.864,-33.886,-9.006)
C1': (-27.971,-32.883,-9.336)
O4': (-28.056,-34.238,-9.754)
C5': (-26.716,-36.229,-9.448)
P: (-26.660,-37.663,-7.251)
O2: (-29.512,-30.742,-8.808)
C4': (-26.721,-34.789,-9.872)
C2': (-26.488,-32.520,-9.234)
O2': (-26.079,-31.940,-10.451)
N1: (-28.739,-32.734,-8.086)
N3: (-30.300,-31.471,-6.821)
N4: (-31.071,-32.269,-4.818)
C6: (-28.700,-33.691,-7.108)
C5: (-29.450,-33.578,-6.001)
O3': (-24.521,-33.954,-9.425)
OP1: (-23.571,-31.920,-8.450)
OP2: (-22.073,-33.963,-8.900)
C3': (-24.519,-35.242,-4.554)
C1': (-25.540,-33.166,-4.319)
C5': (-22.764,-34.080,-6.014)
O4': (-24.152,-32.916,-4.430)
C8: (-25.941,-31.338,-6.037)
O2': (-26.927,-35.117,-4.508)
C6: (-28.423,-29.279,-4.657)
C5: (-27.473,-30.209,-5.091)
C4: (-27.253,-31.308,-4.282)
P: (-23.374,-33.393,-8.473)
C4': (-23.454,-34.161,-4.676)
C2': (-25.768,-34.509,-5.001)
C2: (-28.776,-30.660,-2.839)
N1: (-29.084,-29.544,-3.513)
N3: (-27.878,-31.600,-3.130)
N6: (-28.688,-28.141,-5.302)
N7: (-26.646,-30.245,-6.205)
N9: (-26.229,-32.006,-4.873)
O5': (-23.735,-34.002,-7.051)
O3': (-24.658,-35.497,-3.174)
OP2: (-22.073,-33.963,-8.900)
C3': (-24.519,-35.242,-4.554)
C1': (-25.540,-33.166,-4.319)
C5': (-22.764,-34.080,-6.014)
O4': (-24.152,-32.916,-4.430)
C8: (-25.941,-31.338,-6.037)
O2': (-26.927,-35.117,-4.508)
C6: (-28.423,-29.279,-4.657)
C5: (-27.473,-30.209,-5.091)
C4: (-27.253,-31.308,-4.282)
P: (-23.374,-33.393,-8.473)
C4': (-23.454,-34.161,-4.676)
C2': (-25.768,-34.509,-5.001)
C2: (-28.776,-30.660,-2.839)
N1: (-29.084,-29.544,-3.513)
N3: (-27.878,-31.600,-3.130)
N6: (-28.688,-28.141,-5.302)
N7: (-26.646,-30.245,-6.205)
N9: (-26.229,-32.006,-4.873)
O5': (-23.735,-34.002,-7.051)
O3': (-24.658,-35.497,-3.174)
Image (generated by PyMOL):