Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12867:12866
Extra
PDB:
ATOM 1 O3' A A2866 28.016 9.756 -9.819 1.00 54.64 O
ATOM 2 P C A2867 27.257 8.562 -10.597 1.00 62.56 P
ATOM 3 OP1 C A2867 26.414 7.838 -9.619 1.00 62.14 O
ATOM 4 OP2 C A2867 28.288 7.804 -11.341 1.00 62.72 O
ATOM 5 O5' C A2867 26.325 9.329 -11.613 1.00 63.25 O
ATOM 6 C5' C A2867 25.551 8.608 -12.558 1.00 63.77 C
ATOM 7 C4' C A2867 24.092 8.903 -12.409 1.00 63.93 C
ATOM 8 O4' C A2867 23.643 8.476 -11.097 1.00 63.31 O
ATOM 9 C3' C A2867 23.699 10.383 -12.538 1.00 64.19 C
ATOM 10 O3' C A2867 22.489 10.498 -13.299 1.00 64.77 O
ATOM 11 C2' C A2867 23.410 10.783 -11.099 1.00 63.56 C
ATOM 12 O2' C A2867 22.505 11.865 -10.970 1.00 63.75 O
ATOM 13 C1' C A2867 22.823 9.480 -10.567 1.00 63.26 C
ATOM 14 N1 C A2867 22.812 9.354 -9.107 1.00 62.55 N
ATOM 15 C2 C A2867 21.561 9.436 -8.520 1.00 62.47 C
ATOM 16 O2 C A2867 20.586 9.603 -9.268 1.00 63.00 O
ATOM 17 N3 C A2867 21.460 9.328 -7.180 1.00 61.84 N
ATOM 18 C4 C A2867 22.540 9.146 -6.432 1.00 61.31 C
ATOM 19 N4 C A2867 22.384 9.041 -5.115 1.00 60.71 N
ATOM 20 C5 C A2867 23.825 9.061 -7.020 1.00 61.38 C
ATOM 21 C6 C A2867 23.923 9.168 -8.350 1.00 62.00 C
ATOM 22 P G A2868 22.468 10.139 -14.859 1.00 78.00 P
ATOM 23 OP1 G A2868 21.495 9.037 -15.029 1.00 78.14 O
ATOM 24 OP2 G A2868 23.879 9.923 -15.295 1.00 77.98 O
ATOM 25 O5' G A2868 21.909 11.476 -15.502 1.00 78.56 O
TER
ATOM 1 O3' A B2865 26.398 15.360 -11.999 1.00 57.23 O
ATOM 2 P A B2866 25.707 13.949 -12.274 1.00 56.61 P
ATOM 3 OP1 A B2866 26.217 13.447 -13.597 1.00 57.14 O
ATOM 4 OP2 A B2866 24.240 14.128 -12.079 1.00 56.75 O
ATOM 5 O5' A B2866 26.281 13.072 -11.095 1.00 55.85 O
ATOM 6 C5' A B2866 27.674 12.785 -11.001 1.00 55.58 C
ATOM 7 C4' A B2866 28.000 12.210 -9.658 1.00 54.82 C
ATOM 8 O4' A B2866 27.520 13.125 -8.647 1.00 54.51 O
ATOM 9 C3' A B2866 27.315 10.888 -9.321 1.00 54.61 C
ATOM 10 O3' A B2866 28.016 9.756 -9.819 1.00 54.64 O
ATOM 11 C2' A B2866 27.246 10.941 -7.804 1.00 53.91 C
ATOM 12 O2' A B2866 28.503 10.637 -7.234 1.00 53.45 O
ATOM 13 C1' A B2866 26.987 12.414 -7.563 1.00 53.99 C
ATOM 14 N9 A B2866 25.566 12.701 -7.482 1.00 54.18 N
ATOM 15 C8 A B2866 24.806 13.246 -8.460 1.00 54.81 C
ATOM 16 N7 A B2866 23.566 13.364 -8.085 1.00 54.83 N
ATOM 17 C5 A B2866 23.536 12.860 -6.798 1.00 54.17 C
ATOM 18 C6 A B2866 22.500 12.706 -5.871 1.00 53.88 C
ATOM 19 N6 A B2866 21.244 13.090 -6.107 1.00 54.23 N
ATOM 20 N1 A B2866 22.791 12.156 -4.686 1.00 53.23 N
ATOM 21 C2 A B2866 24.059 11.827 -4.492 1.00 52.92 C
ATOM 22 N3 A B2866 25.116 11.921 -5.285 1.00 53.14 N
ATOM 23 C4 A B2866 24.773 12.453 -6.431 1.00 53.77 C
ATOM 24 P C B2867 27.257 8.562 -10.597 1.00 62.56 P
ATOM 25 OP1 C B2867 26.414 7.838 -9.619 1.00 62.14 O
ATOM 26 OP2 C B2867 28.288 7.804 -11.341 1.00 62.72 O
ATOM 27 O5' C B2867 26.325 9.329 -11.613 1.00 63.25 O
TER
ATOM 2 P C A2867 27.257 8.562 -10.597 1.00 62.56 P
ATOM 3 OP1 C A2867 26.414 7.838 -9.619 1.00 62.14 O
ATOM 4 OP2 C A2867 28.288 7.804 -11.341 1.00 62.72 O
ATOM 5 O5' C A2867 26.325 9.329 -11.613 1.00 63.25 O
ATOM 6 C5' C A2867 25.551 8.608 -12.558 1.00 63.77 C
ATOM 7 C4' C A2867 24.092 8.903 -12.409 1.00 63.93 C
ATOM 8 O4' C A2867 23.643 8.476 -11.097 1.00 63.31 O
ATOM 9 C3' C A2867 23.699 10.383 -12.538 1.00 64.19 C
ATOM 10 O3' C A2867 22.489 10.498 -13.299 1.00 64.77 O
ATOM 11 C2' C A2867 23.410 10.783 -11.099 1.00 63.56 C
ATOM 12 O2' C A2867 22.505 11.865 -10.970 1.00 63.75 O
ATOM 13 C1' C A2867 22.823 9.480 -10.567 1.00 63.26 C
ATOM 14 N1 C A2867 22.812 9.354 -9.107 1.00 62.55 N
ATOM 15 C2 C A2867 21.561 9.436 -8.520 1.00 62.47 C
ATOM 16 O2 C A2867 20.586 9.603 -9.268 1.00 63.00 O
ATOM 17 N3 C A2867 21.460 9.328 -7.180 1.00 61.84 N
ATOM 18 C4 C A2867 22.540 9.146 -6.432 1.00 61.31 C
ATOM 19 N4 C A2867 22.384 9.041 -5.115 1.00 60.71 N
ATOM 20 C5 C A2867 23.825 9.061 -7.020 1.00 61.38 C
ATOM 21 C6 C A2867 23.923 9.168 -8.350 1.00 62.00 C
ATOM 22 P G A2868 22.468 10.139 -14.859 1.00 78.00 P
ATOM 23 OP1 G A2868 21.495 9.037 -15.029 1.00 78.14 O
ATOM 24 OP2 G A2868 23.879 9.923 -15.295 1.00 77.98 O
ATOM 25 O5' G A2868 21.909 11.476 -15.502 1.00 78.56 O
TER
ATOM 1 O3' A B2865 26.398 15.360 -11.999 1.00 57.23 O
ATOM 2 P A B2866 25.707 13.949 -12.274 1.00 56.61 P
ATOM 3 OP1 A B2866 26.217 13.447 -13.597 1.00 57.14 O
ATOM 4 OP2 A B2866 24.240 14.128 -12.079 1.00 56.75 O
ATOM 5 O5' A B2866 26.281 13.072 -11.095 1.00 55.85 O
ATOM 6 C5' A B2866 27.674 12.785 -11.001 1.00 55.58 C
ATOM 7 C4' A B2866 28.000 12.210 -9.658 1.00 54.82 C
ATOM 8 O4' A B2866 27.520 13.125 -8.647 1.00 54.51 O
ATOM 9 C3' A B2866 27.315 10.888 -9.321 1.00 54.61 C
ATOM 10 O3' A B2866 28.016 9.756 -9.819 1.00 54.64 O
ATOM 11 C2' A B2866 27.246 10.941 -7.804 1.00 53.91 C
ATOM 12 O2' A B2866 28.503 10.637 -7.234 1.00 53.45 O
ATOM 13 C1' A B2866 26.987 12.414 -7.563 1.00 53.99 C
ATOM 14 N9 A B2866 25.566 12.701 -7.482 1.00 54.18 N
ATOM 15 C8 A B2866 24.806 13.246 -8.460 1.00 54.81 C
ATOM 16 N7 A B2866 23.566 13.364 -8.085 1.00 54.83 N
ATOM 17 C5 A B2866 23.536 12.860 -6.798 1.00 54.17 C
ATOM 18 C6 A B2866 22.500 12.706 -5.871 1.00 53.88 C
ATOM 19 N6 A B2866 21.244 13.090 -6.107 1.00 54.23 N
ATOM 20 N1 A B2866 22.791 12.156 -4.686 1.00 53.23 N
ATOM 21 C2 A B2866 24.059 11.827 -4.492 1.00 52.92 C
ATOM 22 N3 A B2866 25.116 11.921 -5.285 1.00 53.14 N
ATOM 23 C4 A B2866 24.773 12.453 -6.431 1.00 53.77 C
ATOM 24 P C B2867 27.257 8.562 -10.597 1.00 62.56 P
ATOM 25 OP1 C B2867 26.414 7.838 -9.619 1.00 62.14 O
ATOM 26 OP2 C B2867 28.288 7.804 -11.341 1.00 62.72 O
ATOM 27 O5' C B2867 26.325 9.329 -11.613 1.00 63.25 O
TER
Atoms:
C2: (21.561,9.436,-8.520)
OP1: (26.414,7.838,-9.619)
OP2: (28.288,7.804,-11.341)
C4: (22.540,9.146,-6.432)
O5': (26.325,9.329,-11.613)
C3': (23.699,10.383,-12.538)
C1': (22.823,9.480,-10.567)
O4': (23.643,8.476,-11.097)
C5': (25.551,8.608,-12.558)
P: (27.257,8.562,-10.597)
O2: (20.586,9.603,-9.268)
C4': (24.092,8.903,-12.409)
C2': (23.410,10.783,-11.099)
O2': (22.505,11.865,-10.970)
N1: (22.812,9.354,-9.107)
N3: (21.460,9.328,-7.180)
N4: (22.384,9.041,-5.115)
C6: (23.923,9.168,-8.350)
C5: (23.825,9.061,-7.020)
O3': (22.489,10.498,-13.299)
OP1: (26.414,7.838,-9.619)
OP2: (28.288,7.804,-11.341)
C4: (22.540,9.146,-6.432)
O5': (26.325,9.329,-11.613)
C3': (23.699,10.383,-12.538)
C1': (22.823,9.480,-10.567)
O4': (23.643,8.476,-11.097)
C5': (25.551,8.608,-12.558)
P: (27.257,8.562,-10.597)
O2: (20.586,9.603,-9.268)
C4': (24.092,8.903,-12.409)
C2': (23.410,10.783,-11.099)
O2': (22.505,11.865,-10.970)
N1: (22.812,9.354,-9.107)
N3: (21.460,9.328,-7.180)
N4: (22.384,9.041,-5.115)
C6: (23.923,9.168,-8.350)
C5: (23.825,9.061,-7.020)
O3': (22.489,10.498,-13.299)
OP1: (26.217,13.447,-13.597)
OP2: (24.240,14.128,-12.079)
C3': (27.315,10.888,-9.321)
C1': (26.987,12.414,-7.563)
C5': (27.674,12.785,-11.001)
O4': (27.520,13.125,-8.647)
C8: (24.806,13.246,-8.460)
O2': (28.503,10.637,-7.234)
C6: (22.500,12.706,-5.871)
C5: (23.536,12.860,-6.798)
C4: (24.773,12.453,-6.431)
P: (25.707,13.949,-12.274)
C4': (28.000,12.210,-9.658)
C2': (27.246,10.941,-7.804)
C2: (24.059,11.827,-4.492)
N1: (22.791,12.156,-4.686)
N3: (25.116,11.921,-5.285)
N6: (21.244,13.090,-6.107)
N7: (23.566,13.364,-8.085)
N9: (25.566,12.701,-7.482)
O5': (26.281,13.072,-11.095)
O3': (28.016,9.756,-9.819)
OP2: (24.240,14.128,-12.079)
C3': (27.315,10.888,-9.321)
C1': (26.987,12.414,-7.563)
C5': (27.674,12.785,-11.001)
O4': (27.520,13.125,-8.647)
C8: (24.806,13.246,-8.460)
O2': (28.503,10.637,-7.234)
C6: (22.500,12.706,-5.871)
C5: (23.536,12.860,-6.798)
C4: (24.773,12.453,-6.431)
P: (25.707,13.949,-12.274)
C4': (28.000,12.210,-9.658)
C2': (27.246,10.941,-7.804)
C2: (24.059,11.827,-4.492)
N1: (22.791,12.156,-4.686)
N3: (25.116,11.921,-5.285)
N6: (21.244,13.090,-6.107)
N7: (23.566,13.364,-8.085)
N9: (25.566,12.701,-7.482)
O5': (26.281,13.072,-11.095)
O3': (28.016,9.756,-9.819)
Image (generated by PyMOL):