Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02393:02418
Extra
PDB:
ATOM 1 O3' C A2392 54.397 118.916 130.002 1.00 33.79 O
ATOM 2 P C A2393 54.264 118.810 131.601 1.00 35.81 P
ATOM 3 OP1 C A2393 53.258 117.750 131.911 1.00 34.17 O
ATOM 4 OP2 C A2393 54.088 120.171 132.166 1.00 34.49 O
ATOM 5 O5' C A2393 55.693 118.289 132.055 1.00 31.51 O
ATOM 6 C5' C A2393 56.178 117.033 131.594 1.00 30.06 C
ATOM 7 C4' C A2393 57.485 116.715 132.256 1.00 31.95 C
ATOM 8 O4' C A2393 58.503 117.631 131.760 1.00 30.76 O
ATOM 9 C3' C A2393 57.486 116.836 133.776 1.00 32.91 C
ATOM 10 O3' C A2393 58.299 115.816 134.330 1.00 37.01 O
ATOM 11 C2' C A2393 58.121 118.207 134.000 1.00 32.63 C
ATOM 12 O2' C A2393 58.798 118.347 135.235 1.00 32.86 O
ATOM 13 C1' C A2393 59.119 118.277 132.847 1.00 30.38 C
ATOM 14 N1 C A2393 59.468 119.656 132.464 1.00 28.95 N
ATOM 15 C2 C A2393 60.823 119.979 132.278 1.00 31.90 C
ATOM 16 O2 C A2393 61.673 119.067 132.292 1.00 33.31 O
ATOM 17 N3 C A2393 61.173 121.274 132.079 1.00 31.24 N
ATOM 18 C4 C A2393 60.230 122.220 132.040 1.00 31.83 C
ATOM 19 N4 C A2393 60.627 123.493 131.927 1.00 30.00 N
ATOM 20 C5 C A2393 58.838 121.905 132.137 1.00 29.55 C
ATOM 21 C6 C A2393 58.508 120.623 132.342 1.00 28.28 C
ATOM 22 P A A2394 57.655 114.737 135.329 1.00 39.70 P
ATOM 23 OP1 A A2394 56.687 113.902 134.570 1.00 40.13 O
ATOM 24 OP2 A A2394 57.195 115.437 136.547 1.00 41.67 O
ATOM 25 O5' A A2394 58.916 113.843 135.719 1.00 39.52 O
TER
ATOM 1 O3' A B2417 53.634 122.227 139.817 1.00 41.43 O
ATOM 2 P A B2418 53.655 122.122 138.211 1.00 41.14 P
ATOM 3 OP1 A B2418 52.410 122.745 137.686 1.00 42.12 O
ATOM 4 OP2 A B2418 53.985 120.722 137.845 1.00 39.56 O
ATOM 5 O5' A B2418 54.863 123.061 137.785 1.00 39.30 O
ATOM 6 C5' A B2418 54.959 124.392 138.308 1.00 39.08 C
ATOM 7 C4' A B2418 55.532 125.319 137.271 1.00 39.64 C
ATOM 8 O4' A B2418 56.881 124.886 136.965 1.00 38.73 O
ATOM 9 C3' A B2418 54.784 125.373 135.944 1.00 40.04 C
ATOM 10 O3' A B2418 54.834 126.698 135.411 1.00 41.18 O
ATOM 11 C2' A B2418 55.552 124.375 135.082 1.00 39.28 C
ATOM 12 O2' A B2418 55.483 124.695 133.705 1.00 41.01 O
ATOM 13 C1' A B2418 56.981 124.542 135.601 1.00 36.57 C
ATOM 14 N9 A B2418 57.817 123.343 135.513 1.00 33.83 N
ATOM 15 C8 A B2418 57.437 122.025 135.422 1.00 32.58 C
ATOM 16 N7 A B2418 58.444 121.187 135.371 1.00 30.71 N
ATOM 17 C5 A B2418 59.563 122.005 135.424 1.00 33.02 C
ATOM 18 C6 A B2418 60.945 121.728 135.388 1.00 34.42 C
ATOM 19 N6 A B2418 61.455 120.504 135.255 1.00 34.37 N
ATOM 20 N1 A B2418 61.797 122.772 135.477 1.00 34.73 N
ATOM 21 C2 A B2418 61.288 124.008 135.567 1.00 35.31 C
ATOM 22 N3 A B2418 60.014 124.398 135.590 1.00 35.33 N
ATOM 23 C4 A B2418 59.191 123.335 135.518 1.00 34.75 C
ATOM 24 P G B2419 53.469 127.417 134.944 1.00 44.37 P
ATOM 25 OP1 G B2419 52.314 126.683 135.534 1.00 42.85 O
ATOM 26 OP2 G B2419 53.530 127.629 133.471 1.00 47.41 O
ATOM 27 O5' G B2419 53.526 128.857 135.616 1.00 43.62 O
TER
ATOM 2 P C A2393 54.264 118.810 131.601 1.00 35.81 P
ATOM 3 OP1 C A2393 53.258 117.750 131.911 1.00 34.17 O
ATOM 4 OP2 C A2393 54.088 120.171 132.166 1.00 34.49 O
ATOM 5 O5' C A2393 55.693 118.289 132.055 1.00 31.51 O
ATOM 6 C5' C A2393 56.178 117.033 131.594 1.00 30.06 C
ATOM 7 C4' C A2393 57.485 116.715 132.256 1.00 31.95 C
ATOM 8 O4' C A2393 58.503 117.631 131.760 1.00 30.76 O
ATOM 9 C3' C A2393 57.486 116.836 133.776 1.00 32.91 C
ATOM 10 O3' C A2393 58.299 115.816 134.330 1.00 37.01 O
ATOM 11 C2' C A2393 58.121 118.207 134.000 1.00 32.63 C
ATOM 12 O2' C A2393 58.798 118.347 135.235 1.00 32.86 O
ATOM 13 C1' C A2393 59.119 118.277 132.847 1.00 30.38 C
ATOM 14 N1 C A2393 59.468 119.656 132.464 1.00 28.95 N
ATOM 15 C2 C A2393 60.823 119.979 132.278 1.00 31.90 C
ATOM 16 O2 C A2393 61.673 119.067 132.292 1.00 33.31 O
ATOM 17 N3 C A2393 61.173 121.274 132.079 1.00 31.24 N
ATOM 18 C4 C A2393 60.230 122.220 132.040 1.00 31.83 C
ATOM 19 N4 C A2393 60.627 123.493 131.927 1.00 30.00 N
ATOM 20 C5 C A2393 58.838 121.905 132.137 1.00 29.55 C
ATOM 21 C6 C A2393 58.508 120.623 132.342 1.00 28.28 C
ATOM 22 P A A2394 57.655 114.737 135.329 1.00 39.70 P
ATOM 23 OP1 A A2394 56.687 113.902 134.570 1.00 40.13 O
ATOM 24 OP2 A A2394 57.195 115.437 136.547 1.00 41.67 O
ATOM 25 O5' A A2394 58.916 113.843 135.719 1.00 39.52 O
TER
ATOM 1 O3' A B2417 53.634 122.227 139.817 1.00 41.43 O
ATOM 2 P A B2418 53.655 122.122 138.211 1.00 41.14 P
ATOM 3 OP1 A B2418 52.410 122.745 137.686 1.00 42.12 O
ATOM 4 OP2 A B2418 53.985 120.722 137.845 1.00 39.56 O
ATOM 5 O5' A B2418 54.863 123.061 137.785 1.00 39.30 O
ATOM 6 C5' A B2418 54.959 124.392 138.308 1.00 39.08 C
ATOM 7 C4' A B2418 55.532 125.319 137.271 1.00 39.64 C
ATOM 8 O4' A B2418 56.881 124.886 136.965 1.00 38.73 O
ATOM 9 C3' A B2418 54.784 125.373 135.944 1.00 40.04 C
ATOM 10 O3' A B2418 54.834 126.698 135.411 1.00 41.18 O
ATOM 11 C2' A B2418 55.552 124.375 135.082 1.00 39.28 C
ATOM 12 O2' A B2418 55.483 124.695 133.705 1.00 41.01 O
ATOM 13 C1' A B2418 56.981 124.542 135.601 1.00 36.57 C
ATOM 14 N9 A B2418 57.817 123.343 135.513 1.00 33.83 N
ATOM 15 C8 A B2418 57.437 122.025 135.422 1.00 32.58 C
ATOM 16 N7 A B2418 58.444 121.187 135.371 1.00 30.71 N
ATOM 17 C5 A B2418 59.563 122.005 135.424 1.00 33.02 C
ATOM 18 C6 A B2418 60.945 121.728 135.388 1.00 34.42 C
ATOM 19 N6 A B2418 61.455 120.504 135.255 1.00 34.37 N
ATOM 20 N1 A B2418 61.797 122.772 135.477 1.00 34.73 N
ATOM 21 C2 A B2418 61.288 124.008 135.567 1.00 35.31 C
ATOM 22 N3 A B2418 60.014 124.398 135.590 1.00 35.33 N
ATOM 23 C4 A B2418 59.191 123.335 135.518 1.00 34.75 C
ATOM 24 P G B2419 53.469 127.417 134.944 1.00 44.37 P
ATOM 25 OP1 G B2419 52.314 126.683 135.534 1.00 42.85 O
ATOM 26 OP2 G B2419 53.530 127.629 133.471 1.00 47.41 O
ATOM 27 O5' G B2419 53.526 128.857 135.616 1.00 43.62 O
TER
Atoms:
C2: (60.823,119.979,132.278)
OP1: (53.258,117.750,131.911)
OP2: (54.088,120.171,132.166)
C4: (60.230,122.220,132.040)
O5': (55.693,118.289,132.055)
C3': (57.486,116.836,133.776)
C1': (59.119,118.277,132.847)
O4': (58.503,117.631,131.760)
C5': (56.178,117.033,131.594)
P: (54.264,118.810,131.601)
O2: (61.673,119.067,132.292)
C4': (57.485,116.715,132.256)
C2': (58.121,118.207,134.000)
O2': (58.798,118.347,135.235)
N1: (59.468,119.656,132.464)
N3: (61.173,121.274,132.079)
N4: (60.627,123.493,131.927)
C6: (58.508,120.623,132.342)
C5: (58.838,121.905,132.137)
O3': (58.299,115.816,134.330)
OP1: (53.258,117.750,131.911)
OP2: (54.088,120.171,132.166)
C4: (60.230,122.220,132.040)
O5': (55.693,118.289,132.055)
C3': (57.486,116.836,133.776)
C1': (59.119,118.277,132.847)
O4': (58.503,117.631,131.760)
C5': (56.178,117.033,131.594)
P: (54.264,118.810,131.601)
O2: (61.673,119.067,132.292)
C4': (57.485,116.715,132.256)
C2': (58.121,118.207,134.000)
O2': (58.798,118.347,135.235)
N1: (59.468,119.656,132.464)
N3: (61.173,121.274,132.079)
N4: (60.627,123.493,131.927)
C6: (58.508,120.623,132.342)
C5: (58.838,121.905,132.137)
O3': (58.299,115.816,134.330)
OP1: (52.410,122.745,137.686)
OP2: (53.985,120.722,137.845)
C3': (54.784,125.373,135.944)
C1': (56.981,124.542,135.601)
C5': (54.959,124.392,138.308)
O4': (56.881,124.886,136.965)
C8: (57.437,122.025,135.422)
O2': (55.483,124.695,133.705)
C6: (60.945,121.728,135.388)
C5: (59.563,122.005,135.424)
C4: (59.191,123.335,135.518)
P: (53.655,122.122,138.211)
C4': (55.532,125.319,137.271)
C2': (55.552,124.375,135.082)
C2: (61.288,124.008,135.567)
N1: (61.797,122.772,135.477)
N3: (60.014,124.398,135.590)
N6: (61.455,120.504,135.255)
N7: (58.444,121.187,135.371)
N9: (57.817,123.343,135.513)
O5': (54.863,123.061,137.785)
O3': (54.834,126.698,135.411)
OP2: (53.985,120.722,137.845)
C3': (54.784,125.373,135.944)
C1': (56.981,124.542,135.601)
C5': (54.959,124.392,138.308)
O4': (56.881,124.886,136.965)
C8: (57.437,122.025,135.422)
O2': (55.483,124.695,133.705)
C6: (60.945,121.728,135.388)
C5: (59.563,122.005,135.424)
C4: (59.191,123.335,135.518)
P: (53.655,122.122,138.211)
C4': (55.532,125.319,137.271)
C2': (55.552,124.375,135.082)
C2: (61.288,124.008,135.567)
N1: (61.797,122.772,135.477)
N3: (60.014,124.398,135.590)
N6: (61.455,120.504,135.255)
N7: (58.444,121.187,135.371)
N9: (57.817,123.343,135.513)
O5': (54.863,123.061,137.785)
O3': (54.834,126.698,135.411)
Image (generated by PyMOL):