Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBR:C8:C9
Extra
PDB:
ATOM 1 O3' U A 7 24.018 7.682 -10.373 1.00 37.99 O
ATOM 2 P C A 8 23.134 6.408 -9.943 1.00 44.14 P
ATOM 3 OP1 C A 8 22.351 6.040 -11.153 1.00 43.42 O
ATOM 4 OP2 C A 8 22.429 6.682 -8.661 1.00 37.47 O
ATOM 5 O5' C A 8 24.192 5.249 -9.669 1.00 41.50 O
ATOM 6 C5' C A 8 25.093 4.824 -10.684 1.00 46.15 C
ATOM 7 C4' C A 8 26.103 3.862 -10.111 1.00 47.64 C
ATOM 8 O4' C A 8 27.057 4.594 -9.301 1.00 48.16 O
ATOM 9 C3' C A 8 25.533 2.808 -9.176 1.00 51.43 C
ATOM 10 O3' C A 8 25.070 1.692 -9.928 1.00 54.90 O
ATOM 11 C2' C A 8 26.735 2.454 -8.310 1.00 49.42 C
ATOM 12 O2' C A 8 27.593 1.520 -8.932 1.00 51.40 O
ATOM 13 C1' C A 8 27.425 3.814 -8.174 1.00 46.89 C
ATOM 14 N1 C A 8 27.088 4.567 -6.947 1.00 43.37 N
ATOM 15 C2 C A 8 27.980 4.527 -5.851 1.00 41.94 C
ATOM 16 O2 C A 8 29.010 3.854 -5.934 1.00 42.37 O
ATOM 17 N3 C A 8 27.684 5.226 -4.733 1.00 39.78 N
ATOM 18 C4 C A 8 26.561 5.938 -4.672 1.00 36.87 C
ATOM 19 N4 C A 8 26.313 6.603 -3.551 1.00 34.49 N
ATOM 20 C5 C A 8 25.640 5.995 -5.763 1.00 36.89 C
ATOM 21 C6 C A 8 25.939 5.302 -6.866 1.00 36.14 C
ATOM 22 P A A 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 23 OP1 A A 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 24 OP2 A A 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 25 O5' A A 9 22.931 1.627 -8.500 1.00 55.99 O
TER
ATOM 1 O3' C B 8 25.070 1.692 -9.928 1.00 54.90 O
ATOM 2 P A B 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 3 OP1 A B 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 4 OP2 A B 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 5 O5' A B 9 22.931 1.627 -8.500 1.00 55.99 O
ATOM 6 C5' A B 9 21.542 1.297 -8.480 1.00 56.25 C
ATOM 7 C4' A B 9 20.802 2.049 -7.389 1.00 55.45 C
ATOM 8 O4' A B 9 21.480 1.873 -6.107 1.00 54.39 O
ATOM 9 C3' A B 9 20.742 3.561 -7.603 1.00 55.36 C
ATOM 10 O3' A B 9 19.595 4.111 -6.943 1.00 59.44 O
ATOM 11 C2' A B 9 22.026 4.034 -6.925 1.00 54.51 C
ATOM 12 O2' A B 9 21.995 5.387 -6.514 1.00 55.10 O
ATOM 13 C1' A B 9 22.070 3.100 -5.715 1.00 53.23 C
ATOM 14 N9 A B 9 23.371 2.875 -5.078 1.00 49.02 N
ATOM 15 C8 A B 9 24.445 2.144 -5.519 1.00 48.43 C
ATOM 16 N7 A B 9 25.479 2.182 -4.709 1.00 44.34 N
ATOM 17 C5 A B 9 25.053 2.983 -3.662 1.00 45.69 C
ATOM 18 C6 A B 9 25.682 3.409 -2.485 1.00 45.59 C
ATOM 19 N6 A B 9 26.934 3.081 -2.153 1.00 44.83 N
ATOM 20 N1 A B 9 24.976 4.200 -1.648 1.00 44.10 N
ATOM 21 C2 A B 9 23.728 4.533 -1.983 1.00 44.12 C
ATOM 22 N3 A B 9 23.030 4.199 -3.056 1.00 45.14 N
ATOM 23 C4 A B 9 23.757 3.413 -3.870 1.00 47.35 C
ATOM 24 P G B 10 18.240 4.389 -7.772 1.00 60.80 P
ATOM 25 OP1 G B 10 18.247 3.490 -8.953 1.00 62.26 O
ATOM 26 OP2 G B 10 18.102 5.850 -7.973 1.00 59.44 O
ATOM 27 O5' G B 10 17.071 3.919 -6.794 1.00 62.63 O
TER
ATOM 2 P C A 8 23.134 6.408 -9.943 1.00 44.14 P
ATOM 3 OP1 C A 8 22.351 6.040 -11.153 1.00 43.42 O
ATOM 4 OP2 C A 8 22.429 6.682 -8.661 1.00 37.47 O
ATOM 5 O5' C A 8 24.192 5.249 -9.669 1.00 41.50 O
ATOM 6 C5' C A 8 25.093 4.824 -10.684 1.00 46.15 C
ATOM 7 C4' C A 8 26.103 3.862 -10.111 1.00 47.64 C
ATOM 8 O4' C A 8 27.057 4.594 -9.301 1.00 48.16 O
ATOM 9 C3' C A 8 25.533 2.808 -9.176 1.00 51.43 C
ATOM 10 O3' C A 8 25.070 1.692 -9.928 1.00 54.90 O
ATOM 11 C2' C A 8 26.735 2.454 -8.310 1.00 49.42 C
ATOM 12 O2' C A 8 27.593 1.520 -8.932 1.00 51.40 O
ATOM 13 C1' C A 8 27.425 3.814 -8.174 1.00 46.89 C
ATOM 14 N1 C A 8 27.088 4.567 -6.947 1.00 43.37 N
ATOM 15 C2 C A 8 27.980 4.527 -5.851 1.00 41.94 C
ATOM 16 O2 C A 8 29.010 3.854 -5.934 1.00 42.37 O
ATOM 17 N3 C A 8 27.684 5.226 -4.733 1.00 39.78 N
ATOM 18 C4 C A 8 26.561 5.938 -4.672 1.00 36.87 C
ATOM 19 N4 C A 8 26.313 6.603 -3.551 1.00 34.49 N
ATOM 20 C5 C A 8 25.640 5.995 -5.763 1.00 36.89 C
ATOM 21 C6 C A 8 25.939 5.302 -6.866 1.00 36.14 C
ATOM 22 P A A 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 23 OP1 A A 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 24 OP2 A A 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 25 O5' A A 9 22.931 1.627 -8.500 1.00 55.99 O
TER
ATOM 1 O3' C B 8 25.070 1.692 -9.928 1.00 54.90 O
ATOM 2 P A B 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 3 OP1 A B 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 4 OP2 A B 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 5 O5' A B 9 22.931 1.627 -8.500 1.00 55.99 O
ATOM 6 C5' A B 9 21.542 1.297 -8.480 1.00 56.25 C
ATOM 7 C4' A B 9 20.802 2.049 -7.389 1.00 55.45 C
ATOM 8 O4' A B 9 21.480 1.873 -6.107 1.00 54.39 O
ATOM 9 C3' A B 9 20.742 3.561 -7.603 1.00 55.36 C
ATOM 10 O3' A B 9 19.595 4.111 -6.943 1.00 59.44 O
ATOM 11 C2' A B 9 22.026 4.034 -6.925 1.00 54.51 C
ATOM 12 O2' A B 9 21.995 5.387 -6.514 1.00 55.10 O
ATOM 13 C1' A B 9 22.070 3.100 -5.715 1.00 53.23 C
ATOM 14 N9 A B 9 23.371 2.875 -5.078 1.00 49.02 N
ATOM 15 C8 A B 9 24.445 2.144 -5.519 1.00 48.43 C
ATOM 16 N7 A B 9 25.479 2.182 -4.709 1.00 44.34 N
ATOM 17 C5 A B 9 25.053 2.983 -3.662 1.00 45.69 C
ATOM 18 C6 A B 9 25.682 3.409 -2.485 1.00 45.59 C
ATOM 19 N6 A B 9 26.934 3.081 -2.153 1.00 44.83 N
ATOM 20 N1 A B 9 24.976 4.200 -1.648 1.00 44.10 N
ATOM 21 C2 A B 9 23.728 4.533 -1.983 1.00 44.12 C
ATOM 22 N3 A B 9 23.030 4.199 -3.056 1.00 45.14 N
ATOM 23 C4 A B 9 23.757 3.413 -3.870 1.00 47.35 C
ATOM 24 P G B 10 18.240 4.389 -7.772 1.00 60.80 P
ATOM 25 OP1 G B 10 18.247 3.490 -8.953 1.00 62.26 O
ATOM 26 OP2 G B 10 18.102 5.850 -7.973 1.00 59.44 O
ATOM 27 O5' G B 10 17.071 3.919 -6.794 1.00 62.63 O
TER
Atoms:
C2: (27.980,4.527,-5.851)
OP1: (22.351,6.040,-11.153)
OP2: (22.429,6.682,-8.661)
C4: (26.561,5.938,-4.672)
O5': (24.192,5.249,-9.669)
C3': (25.533,2.808,-9.176)
C1': (27.425,3.814,-8.174)
O4': (27.057,4.594,-9.301)
C5': (25.093,4.824,-10.684)
P: (23.134,6.408,-9.943)
O2: (29.010,3.854,-5.934)
C4': (26.103,3.862,-10.111)
C2': (26.735,2.454,-8.310)
O2': (27.593,1.520,-8.932)
N1: (27.088,4.567,-6.947)
N3: (27.684,5.226,-4.733)
N4: (26.313,6.603,-3.551)
C6: (25.939,5.302,-6.866)
C5: (25.640,5.995,-5.763)
O3': (25.070,1.692,-9.928)
OP1: (22.351,6.040,-11.153)
OP2: (22.429,6.682,-8.661)
C4: (26.561,5.938,-4.672)
O5': (24.192,5.249,-9.669)
C3': (25.533,2.808,-9.176)
C1': (27.425,3.814,-8.174)
O4': (27.057,4.594,-9.301)
C5': (25.093,4.824,-10.684)
P: (23.134,6.408,-9.943)
O2: (29.010,3.854,-5.934)
C4': (26.103,3.862,-10.111)
C2': (26.735,2.454,-8.310)
O2': (27.593,1.520,-8.932)
N1: (27.088,4.567,-6.947)
N3: (27.684,5.226,-4.733)
N4: (26.313,6.603,-3.551)
C6: (25.939,5.302,-6.866)
C5: (25.640,5.995,-5.763)
O3': (25.070,1.692,-9.928)
OP1: (24.673,-0.167,-8.332)
OP2: (23.223,0.098,-10.447)
C3': (20.742,3.561,-7.603)
C1': (22.070,3.100,-5.715)
C5': (21.542,1.297,-8.480)
O4': (21.480,1.873,-6.107)
C8: (24.445,2.144,-5.519)
O2': (21.995,5.387,-6.514)
C6: (25.682,3.409,-2.485)
C5: (25.053,2.983,-3.662)
C4: (23.757,3.413,-3.870)
P: (23.956,0.706,-9.304)
C4': (20.802,2.049,-7.389)
C2': (22.026,4.034,-6.925)
C2: (23.728,4.533,-1.983)
N1: (24.976,4.200,-1.648)
N3: (23.030,4.199,-3.056)
N6: (26.934,3.081,-2.153)
N7: (25.479,2.182,-4.709)
N9: (23.371,2.875,-5.078)
O5': (22.931,1.627,-8.500)
O3': (19.595,4.111,-6.943)
OP2: (23.223,0.098,-10.447)
C3': (20.742,3.561,-7.603)
C1': (22.070,3.100,-5.715)
C5': (21.542,1.297,-8.480)
O4': (21.480,1.873,-6.107)
C8: (24.445,2.144,-5.519)
O2': (21.995,5.387,-6.514)
C6: (25.682,3.409,-2.485)
C5: (25.053,2.983,-3.662)
C4: (23.757,3.413,-3.870)
P: (23.956,0.706,-9.304)
C4': (20.802,2.049,-7.389)
C2': (22.026,4.034,-6.925)
C2: (23.728,4.533,-1.983)
N1: (24.976,4.200,-1.648)
N3: (23.030,4.199,-3.056)
N6: (26.934,3.081,-2.153)
N7: (25.479,2.182,-4.709)
N9: (23.371,2.875,-5.078)
O5': (22.931,1.627,-8.500)
O3': (19.595,4.111,-6.943)
Image (generated by PyMOL):