Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12427:12428
Extra
PDB:
ATOM 1 O3' A A2426 -22.355 -69.255 30.371 1.00 80.69 O
ATOM 2 P C A2427 -22.106 -67.744 30.887 1.00 83.60 P
ATOM 3 OP1 C A2427 -22.820 -66.849 29.969 1.00 83.77 O
ATOM 4 OP2 C A2427 -20.653 -67.569 31.051 1.00 83.06 O
ATOM 5 O5' C A2427 -22.813 -67.724 32.300 1.00 83.41 O
ATOM 6 C5' C A2427 -24.220 -67.627 32.393 1.00 83.78 C
ATOM 7 C4' C A2427 -24.663 -67.573 33.821 1.00 83.51 C
ATOM 8 O4' C A2427 -24.242 -68.779 34.498 1.00 83.63 O
ATOM 9 C3' C A2427 -24.077 -66.441 34.635 1.00 82.71 C
ATOM 10 O3' C A2427 -24.813 -65.239 34.475 1.00 82.56 O
ATOM 11 C2' C A2427 -24.069 -66.996 36.066 1.00 82.53 C
ATOM 12 O2' C A2427 -25.304 -66.756 36.724 1.00 82.66 O
ATOM 13 C1' C A2427 -23.915 -68.509 35.835 1.00 83.08 C
ATOM 14 N1 C A2427 -22.537 -68.981 36.062 1.00 82.78 N
ATOM 15 C2 C A2427 -22.009 -69.258 37.347 1.00 82.40 C
ATOM 16 O2 C A2427 -22.716 -69.100 38.356 1.00 82.31 O
ATOM 17 N3 C A2427 -20.718 -69.693 37.465 1.00 82.16 N
ATOM 18 C4 C A2427 -19.972 -69.854 36.353 1.00 82.28 C
ATOM 19 N4 C A2427 -18.698 -70.279 36.458 1.00 82.05 N
ATOM 20 C5 C A2427 -20.501 -69.581 35.047 1.00 82.66 C
ATOM 21 C6 C A2427 -21.769 -69.161 34.947 1.00 82.91 C
ATOM 22 P A A2428 -24.166 -63.811 34.831 1.00 83.37 P
ATOM 23 OP1 A A2428 -24.088 -63.725 36.328 1.00 82.94 O
ATOM 24 OP2 A A2428 -24.939 -62.774 34.089 1.00 83.47 O
ATOM 25 O5' A A2428 -22.707 -63.913 34.214 1.00 83.13 O
TER
ATOM 1 O3' C B2427 -24.813 -65.239 34.475 1.00 82.56 O
ATOM 2 P A B2428 -24.166 -63.811 34.831 1.00 83.37 P
ATOM 3 OP1 A B2428 -24.088 -63.725 36.328 1.00 82.94 O
ATOM 4 OP2 A B2428 -24.939 -62.774 34.089 1.00 83.47 O
ATOM 5 O5' A B2428 -22.707 -63.913 34.214 1.00 83.13 O
ATOM 6 C5' A B2428 -21.955 -62.734 33.903 1.00 82.59 C
ATOM 7 C4' A B2428 -20.507 -63.050 33.699 1.00 82.32 C
ATOM 8 O4' A B2428 -19.966 -63.419 34.972 1.00 81.95 O
ATOM 9 C3' A B2428 -20.236 -64.229 32.752 1.00 82.89 C
ATOM 10 O3' A B2428 -19.045 -64.022 31.998 1.00 82.68 O
ATOM 11 C2' A B2428 -20.019 -65.389 33.699 1.00 82.97 C
ATOM 12 O2' A B2428 -19.192 -66.413 33.179 1.00 83.23 O
ATOM 13 C1' A B2428 -19.373 -64.692 34.880 1.00 82.23 C
ATOM 14 N9 A B2428 -19.548 -65.388 36.156 1.00 82.20 N
ATOM 15 C8 A B2428 -20.642 -65.579 36.973 1.00 82.37 C
ATOM 16 N7 A B2428 -20.339 -66.283 38.049 1.00 82.27 N
ATOM 17 C5 A B2428 -18.962 -66.555 37.921 1.00 82.00 C
ATOM 18 C6 A B2428 -18.000 -67.249 38.691 1.00 81.80 C
ATOM 19 N6 A B2428 -18.232 -67.867 39.851 1.00 81.81 N
ATOM 20 N1 A B2428 -16.733 -67.307 38.242 1.00 81.58 N
ATOM 21 C2 A B2428 -16.441 -66.717 37.084 1.00 81.57 C
ATOM 22 N3 A B2428 -17.234 -66.046 36.274 1.00 81.75 N
ATOM 23 C4 A B2428 -18.481 -66.004 36.758 1.00 81.96 C
ATOM 24 P G B2429 -18.966 -62.856 30.902 1.00 86.35 P
ATOM 25 OP1 G B2429 -20.278 -62.781 30.245 1.00 86.90 O
ATOM 26 OP2 G B2429 -17.772 -63.107 30.060 1.00 86.34 O
ATOM 27 O5' G B2429 -18.744 -61.585 31.824 1.00 85.62 O
TER
ATOM 2 P C A2427 -22.106 -67.744 30.887 1.00 83.60 P
ATOM 3 OP1 C A2427 -22.820 -66.849 29.969 1.00 83.77 O
ATOM 4 OP2 C A2427 -20.653 -67.569 31.051 1.00 83.06 O
ATOM 5 O5' C A2427 -22.813 -67.724 32.300 1.00 83.41 O
ATOM 6 C5' C A2427 -24.220 -67.627 32.393 1.00 83.78 C
ATOM 7 C4' C A2427 -24.663 -67.573 33.821 1.00 83.51 C
ATOM 8 O4' C A2427 -24.242 -68.779 34.498 1.00 83.63 O
ATOM 9 C3' C A2427 -24.077 -66.441 34.635 1.00 82.71 C
ATOM 10 O3' C A2427 -24.813 -65.239 34.475 1.00 82.56 O
ATOM 11 C2' C A2427 -24.069 -66.996 36.066 1.00 82.53 C
ATOM 12 O2' C A2427 -25.304 -66.756 36.724 1.00 82.66 O
ATOM 13 C1' C A2427 -23.915 -68.509 35.835 1.00 83.08 C
ATOM 14 N1 C A2427 -22.537 -68.981 36.062 1.00 82.78 N
ATOM 15 C2 C A2427 -22.009 -69.258 37.347 1.00 82.40 C
ATOM 16 O2 C A2427 -22.716 -69.100 38.356 1.00 82.31 O
ATOM 17 N3 C A2427 -20.718 -69.693 37.465 1.00 82.16 N
ATOM 18 C4 C A2427 -19.972 -69.854 36.353 1.00 82.28 C
ATOM 19 N4 C A2427 -18.698 -70.279 36.458 1.00 82.05 N
ATOM 20 C5 C A2427 -20.501 -69.581 35.047 1.00 82.66 C
ATOM 21 C6 C A2427 -21.769 -69.161 34.947 1.00 82.91 C
ATOM 22 P A A2428 -24.166 -63.811 34.831 1.00 83.37 P
ATOM 23 OP1 A A2428 -24.088 -63.725 36.328 1.00 82.94 O
ATOM 24 OP2 A A2428 -24.939 -62.774 34.089 1.00 83.47 O
ATOM 25 O5' A A2428 -22.707 -63.913 34.214 1.00 83.13 O
TER
ATOM 1 O3' C B2427 -24.813 -65.239 34.475 1.00 82.56 O
ATOM 2 P A B2428 -24.166 -63.811 34.831 1.00 83.37 P
ATOM 3 OP1 A B2428 -24.088 -63.725 36.328 1.00 82.94 O
ATOM 4 OP2 A B2428 -24.939 -62.774 34.089 1.00 83.47 O
ATOM 5 O5' A B2428 -22.707 -63.913 34.214 1.00 83.13 O
ATOM 6 C5' A B2428 -21.955 -62.734 33.903 1.00 82.59 C
ATOM 7 C4' A B2428 -20.507 -63.050 33.699 1.00 82.32 C
ATOM 8 O4' A B2428 -19.966 -63.419 34.972 1.00 81.95 O
ATOM 9 C3' A B2428 -20.236 -64.229 32.752 1.00 82.89 C
ATOM 10 O3' A B2428 -19.045 -64.022 31.998 1.00 82.68 O
ATOM 11 C2' A B2428 -20.019 -65.389 33.699 1.00 82.97 C
ATOM 12 O2' A B2428 -19.192 -66.413 33.179 1.00 83.23 O
ATOM 13 C1' A B2428 -19.373 -64.692 34.880 1.00 82.23 C
ATOM 14 N9 A B2428 -19.548 -65.388 36.156 1.00 82.20 N
ATOM 15 C8 A B2428 -20.642 -65.579 36.973 1.00 82.37 C
ATOM 16 N7 A B2428 -20.339 -66.283 38.049 1.00 82.27 N
ATOM 17 C5 A B2428 -18.962 -66.555 37.921 1.00 82.00 C
ATOM 18 C6 A B2428 -18.000 -67.249 38.691 1.00 81.80 C
ATOM 19 N6 A B2428 -18.232 -67.867 39.851 1.00 81.81 N
ATOM 20 N1 A B2428 -16.733 -67.307 38.242 1.00 81.58 N
ATOM 21 C2 A B2428 -16.441 -66.717 37.084 1.00 81.57 C
ATOM 22 N3 A B2428 -17.234 -66.046 36.274 1.00 81.75 N
ATOM 23 C4 A B2428 -18.481 -66.004 36.758 1.00 81.96 C
ATOM 24 P G B2429 -18.966 -62.856 30.902 1.00 86.35 P
ATOM 25 OP1 G B2429 -20.278 -62.781 30.245 1.00 86.90 O
ATOM 26 OP2 G B2429 -17.772 -63.107 30.060 1.00 86.34 O
ATOM 27 O5' G B2429 -18.744 -61.585 31.824 1.00 85.62 O
TER
Atoms:
C2: (-22.009,-69.258,37.347)
OP1: (-22.820,-66.849,29.969)
OP2: (-20.653,-67.569,31.051)
C4: (-19.972,-69.854,36.353)
O5': (-22.813,-67.724,32.300)
C3': (-24.077,-66.441,34.635)
C1': (-23.915,-68.509,35.835)
O4': (-24.242,-68.779,34.498)
C5': (-24.220,-67.627,32.393)
P: (-22.106,-67.744,30.887)
O2: (-22.716,-69.100,38.356)
C4': (-24.663,-67.573,33.821)
C2': (-24.069,-66.996,36.066)
O2': (-25.304,-66.756,36.724)
N1: (-22.537,-68.981,36.062)
N3: (-20.718,-69.693,37.465)
N4: (-18.698,-70.279,36.458)
C6: (-21.769,-69.161,34.947)
C5: (-20.501,-69.581,35.047)
O3': (-24.813,-65.239,34.475)
OP1: (-22.820,-66.849,29.969)
OP2: (-20.653,-67.569,31.051)
C4: (-19.972,-69.854,36.353)
O5': (-22.813,-67.724,32.300)
C3': (-24.077,-66.441,34.635)
C1': (-23.915,-68.509,35.835)
O4': (-24.242,-68.779,34.498)
C5': (-24.220,-67.627,32.393)
P: (-22.106,-67.744,30.887)
O2: (-22.716,-69.100,38.356)
C4': (-24.663,-67.573,33.821)
C2': (-24.069,-66.996,36.066)
O2': (-25.304,-66.756,36.724)
N1: (-22.537,-68.981,36.062)
N3: (-20.718,-69.693,37.465)
N4: (-18.698,-70.279,36.458)
C6: (-21.769,-69.161,34.947)
C5: (-20.501,-69.581,35.047)
O3': (-24.813,-65.239,34.475)
OP1: (-24.088,-63.725,36.328)
OP2: (-24.939,-62.774,34.089)
C3': (-20.236,-64.229,32.752)
C1': (-19.373,-64.692,34.880)
C5': (-21.955,-62.734,33.903)
O4': (-19.966,-63.419,34.972)
C8: (-20.642,-65.579,36.973)
O2': (-19.192,-66.413,33.179)
C6: (-18.000,-67.249,38.691)
C5: (-18.962,-66.555,37.921)
C4: (-18.481,-66.004,36.758)
P: (-24.166,-63.811,34.831)
C4': (-20.507,-63.050,33.699)
C2': (-20.019,-65.389,33.699)
C2: (-16.441,-66.717,37.084)
N1: (-16.733,-67.307,38.242)
N3: (-17.234,-66.046,36.274)
N6: (-18.232,-67.867,39.851)
N7: (-20.339,-66.283,38.049)
N9: (-19.548,-65.388,36.156)
O5': (-22.707,-63.913,34.214)
O3': (-19.045,-64.022,31.998)
OP2: (-24.939,-62.774,34.089)
C3': (-20.236,-64.229,32.752)
C1': (-19.373,-64.692,34.880)
C5': (-21.955,-62.734,33.903)
O4': (-19.966,-63.419,34.972)
C8: (-20.642,-65.579,36.973)
O2': (-19.192,-66.413,33.179)
C6: (-18.000,-67.249,38.691)
C5: (-18.962,-66.555,37.921)
C4: (-18.481,-66.004,36.758)
P: (-24.166,-63.811,34.831)
C4': (-20.507,-63.050,33.699)
C2': (-20.019,-65.389,33.699)
C2: (-16.441,-66.717,37.084)
N1: (-16.733,-67.307,38.242)
N3: (-17.234,-66.046,36.274)
N6: (-18.232,-67.867,39.851)
N7: (-20.339,-66.283,38.049)
N9: (-19.548,-65.388,36.156)
O5': (-22.707,-63.913,34.214)
O3': (-19.045,-64.022,31.998)
Image (generated by PyMOL):