ClaRNA

Doublet info:

Details

Nucleotide types: CA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3BNN:D13:D14

Extra

PDB:
ATOM 1 O3' A A 12 -5.527 -1.082 -34.954 1.00 43.43 O
ATOM 2 P C A 13 -4.542 0.149 -35.264 1.00 47.26 P
ATOM 3 OP1 C A 13 -4.333 0.166 -36.736 1.00 51.74 O
ATOM 4 OP2 C A 13 -3.373 0.150 -34.357 1.00 43.98 O
ATOM 5 O5' C A 13 -5.407 1.434 -34.903 1.00 47.84 O
ATOM 6 C5' C A 13 -6.643 1.667 -35.554 1.00 50.78 C
ATOM 7 C4' C A 13 -7.394 2.766 -34.857 1.00 49.63 C
ATOM 8 O4' C A 13 -7.717 2.337 -33.515 1.00 46.17 O
ATOM 9 C3' C A 13 -6.581 4.019 -34.626 1.00 52.24 C
ATOM 10 O3' C A 13 -6.574 4.828 -35.776 1.00 55.40 O
ATOM 11 C2' C A 13 -7.320 4.672 -33.473 1.00 50.51 C
ATOM 12 O2' C A 13 -8.503 5.313 -33.899 1.00 48.00 O
ATOM 13 C1' C A 13 -7.665 3.448 -32.633 1.00 47.92 C
ATOM 14 N1 C A 13 -6.685 3.165 -31.575 1.00 49.53 N
ATOM 15 C2 C A 13 -6.909 3.705 -30.303 1.00 46.39 C
ATOM 16 O2 C A 13 -7.895 4.439 -30.131 1.00 47.84 O
ATOM 17 N3 C A 13 -6.045 3.419 -29.300 1.00 45.36 N
ATOM 18 C4 C A 13 -4.979 2.648 -29.538 1.00 42.48 C
ATOM 19 N4 C A 13 -4.160 2.395 -28.520 1.00 37.22 N
ATOM 20 C5 C A 13 -4.711 2.104 -30.833 1.00 37.97 C
ATOM 21 C6 C A 13 -5.584 2.385 -31.814 1.00 44.95 C
ATOM 22 P A A 14 -5.380 5.867 -35.979 1.00 62.76 P
ATOM 23 OP1 A A 14 -5.491 6.924 -34.939 1.00 66.15 O
ATOM 24 OP2 A A 14 -5.347 6.237 -37.406 1.00 65.15 O
ATOM 25 O5' A A 14 -4.089 4.991 -35.683 1.00 62.29 O
TER

ATOM 1 O3' C B 13 -6.574 4.828 -35.776 1.00 55.40 O
ATOM 2 P A B 14 -5.380 5.867 -35.979 1.00 62.76 P
ATOM 3 OP1 A B 14 -5.491 6.924 -34.939 1.00 66.15 O
ATOM 4 OP2 A B 14 -5.347 6.237 -37.406 1.00 65.15 O
ATOM 5 O5' A B 14 -4.089 4.991 -35.683 1.00 62.29 O
ATOM 6 C5' A B 14 -2.995 4.972 -36.585 1.00 52.80 C
ATOM 7 C4' A B 14 -1.765 4.453 -35.883 1.00 54.27 C
ATOM 8 O4' A B 14 -1.634 5.166 -34.616 1.00 49.77 O
ATOM 9 C3' A B 14 -1.739 2.968 -35.518 1.00 51.40 C
ATOM 10 O3' A B 14 -0.391 2.522 -35.517 1.00 56.17 O
ATOM 11 C2' A B 14 -2.254 2.969 -34.085 1.00 51.09 C
ATOM 12 O2' A B 14 -1.888 1.827 -33.327 1.00 44.72 O
ATOM 13 C1' A B 14 -1.589 4.233 -33.549 1.00 51.20 C
ATOM 14 N9 A B 14 -2.305 4.793 -32.405 1.00 48.25 N
ATOM 15 C8 A B 14 -3.405 5.606 -32.426 1.00 49.29 C
ATOM 16 N7 A B 14 -3.856 5.914 -31.234 1.00 48.35 N
ATOM 17 C5 A B 14 -2.987 5.266 -30.370 1.00 46.71 C
ATOM 18 C6 A B 14 -2.926 5.198 -28.969 1.00 47.37 C
ATOM 19 N6 A B 14 -3.803 5.789 -28.170 1.00 51.23 N
ATOM 20 N1 A B 14 -1.926 4.484 -28.414 1.00 50.45 N
ATOM 21 C2 A B 14 -1.058 3.874 -29.223 1.00 51.51 C
ATOM 22 N3 A B 14 -1.017 3.853 -30.557 1.00 52.63 N
ATOM 23 C4 A B 14 -2.021 4.580 -31.075 1.00 43.80 C
ATOM 24 P A B 15 0.337 2.192 -36.908 1.00 52.39 P
ATOM 25 OP1 A B 15 -0.662 2.382 -37.988 1.00 51.56 O
ATOM 26 OP2 A B 15 1.034 0.888 -36.772 1.00 60.20 O
ATOM 27 O5' A B 15 1.443 3.324 -37.020 1.00 48.75 O
TER

Atoms:
C2: (-6.909,3.705,-30.303)
OP1: (-4.333,0.166,-36.736)
OP2: (-3.373,0.150,-34.357)
C4: (-4.979,2.648,-29.538)
O5': (-5.407,1.434,-34.903)
C3': (-6.581,4.019,-34.626)
C1': (-7.665,3.448,-32.633)
O4': (-7.717,2.337,-33.515)
C5': (-6.643,1.667,-35.554)
P: (-4.542,0.149,-35.264)
O2: (-7.895,4.439,-30.131)
C4': (-7.394,2.766,-34.857)
C2': (-7.320,4.672,-33.473)
O2': (-8.503,5.313,-33.899)
N1: (-6.685,3.165,-31.575)
N3: (-6.045,3.419,-29.300)
N4: (-4.160,2.395,-28.520)
C6: (-5.584,2.385,-31.814)
C5: (-4.711,2.104,-30.833)
O3': (-6.574,4.828,-35.776)
OP1: (-5.491,6.924,-34.939)
OP2: (-5.347,6.237,-37.406)
C3': (-1.739,2.968,-35.518)
C1': (-1.589,4.233,-33.549)
C5': (-2.995,4.972,-36.585)
O4': (-1.634,5.166,-34.616)
C8: (-3.405,5.606,-32.426)
O2': (-1.888,1.827,-33.327)
C6: (-2.926,5.198,-28.969)
C5: (-2.987,5.266,-30.370)
C4: (-2.021,4.580,-31.075)
P: (-5.380,5.867,-35.979)
C4': (-1.765,4.453,-35.883)
C2': (-2.254,2.969,-34.085)
C2: (-1.058,3.874,-29.223)
N1: (-1.926,4.484,-28.414)
N3: (-1.017,3.853,-30.557)
N6: (-3.803,5.789,-28.170)
N7: (-3.856,5.914,-31.234)
N9: (-2.305,4.793,-32.405)
O5': (-4.089,4.991,-35.683)
O3': (-0.391,2.522,-35.517)
Image (generated by PyMOL):
PyMOL image
show in jmol