Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0344:0345
Extra
PDB:
ATOM 1 O3' C A 343 53.466 126.381 17.954 1.00 58.16 O
ATOM 2 P C A 344 54.229 125.670 16.737 1.00 57.45 P
ATOM 3 OP1 C A 344 55.505 125.086 17.238 1.00 58.83 O
ATOM 4 OP2 C A 344 54.261 126.640 15.624 1.00 59.91 O
ATOM 5 O5' C A 344 53.265 124.476 16.320 1.00 58.33 O
ATOM 6 C5' C A 344 53.071 123.341 17.183 1.00 58.02 C
ATOM 7 C4' C A 344 52.037 122.413 16.596 1.00 57.52 C
ATOM 8 O4' C A 344 50.795 123.144 16.408 1.00 57.91 O
ATOM 9 C3' C A 344 52.359 121.858 15.219 1.00 57.48 C
ATOM 10 O3' C A 344 53.206 120.713 15.327 1.00 59.13 O
ATOM 11 C2' C A 344 50.973 121.520 14.681 1.00 58.31 C
ATOM 12 O2' C A 344 50.467 120.305 15.194 1.00 57.87 O
ATOM 13 C1' C A 344 50.136 122.672 15.246 1.00 58.52 C
ATOM 14 N1 C A 344 49.953 123.803 14.317 1.00 60.39 N
ATOM 15 C2 C A 344 48.845 123.799 13.449 1.00 60.53 C
ATOM 16 O2 C A 344 48.051 122.846 13.485 1.00 60.26 O
ATOM 17 N3 C A 344 48.671 124.834 12.596 1.00 60.89 N
ATOM 18 C4 C A 344 49.545 125.844 12.584 1.00 61.33 C
ATOM 19 N4 C A 344 49.330 126.847 11.729 1.00 61.10 N
ATOM 20 C5 C A 344 50.680 125.873 13.450 1.00 61.27 C
ATOM 21 C6 C A 344 50.843 124.844 14.291 1.00 61.15 C
ATOM 22 P A A 345 54.234 120.347 14.140 1.00 61.14 P
ATOM 23 OP1 A A 345 53.447 120.011 12.924 1.00 60.54 O
ATOM 24 OP2 A A 345 55.232 119.371 14.659 1.00 59.34 O
ATOM 25 O5' A A 345 54.995 121.711 13.851 1.00 61.28 O
TER
ATOM 1 O3' C B 344 53.206 120.713 15.327 1.00 59.13 O
ATOM 2 P A B 345 54.234 120.347 14.140 1.00 61.14 P
ATOM 3 OP1 A B 345 53.447 120.011 12.924 1.00 60.54 O
ATOM 4 OP2 A B 345 55.232 119.371 14.659 1.00 59.34 O
ATOM 5 O5' A B 345 54.995 121.711 13.851 1.00 61.28 O
ATOM 6 C5' A B 345 56.126 121.743 12.972 1.00 63.00 C
ATOM 7 C4' A B 345 56.157 123.046 12.218 1.00 64.12 C
ATOM 8 O4' A B 345 55.124 123.044 11.190 1.00 65.18 O
ATOM 9 C3' A B 345 55.919 124.292 13.065 1.00 64.74 C
ATOM 10 O3' A B 345 56.749 125.336 12.586 1.00 66.34 O
ATOM 11 C2' A B 345 54.447 124.600 12.798 1.00 65.27 C
ATOM 12 O2' A B 345 54.104 125.962 12.967 1.00 64.87 O
ATOM 13 C1' A B 345 54.315 124.192 11.333 1.00 65.10 C
ATOM 14 N9 A B 345 52.945 123.869 10.926 1.00 65.89 N
ATOM 15 C8 A B 345 52.191 122.765 11.249 1.00 66.62 C
ATOM 16 N7 A B 345 50.978 122.786 10.746 1.00 66.83 N
ATOM 17 C5 A B 345 50.929 123.981 10.038 1.00 66.66 C
ATOM 18 C6 A B 345 49.908 124.598 9.277 1.00 66.37 C
ATOM 19 N6 A B 345 48.693 124.073 9.095 1.00 65.49 N
ATOM 20 N1 A B 345 50.187 125.791 8.705 1.00 65.87 N
ATOM 21 C2 A B 345 51.407 126.320 8.883 1.00 66.70 C
ATOM 22 N3 A B 345 52.446 125.839 9.570 1.00 66.48 N
ATOM 23 C4 A B 345 52.138 124.654 10.133 1.00 66.83 C
ATOM 24 P G B 346 58.172 125.601 13.283 1.00 66.87 P
ATOM 25 OP1 G B 346 58.563 124.375 14.015 1.00 68.08 O
ATOM 26 OP2 G B 346 58.089 126.893 14.003 1.00 66.83 O
ATOM 27 O5' G B 346 59.178 125.742 12.055 1.00 69.26 O
TER
ATOM 2 P C A 344 54.229 125.670 16.737 1.00 57.45 P
ATOM 3 OP1 C A 344 55.505 125.086 17.238 1.00 58.83 O
ATOM 4 OP2 C A 344 54.261 126.640 15.624 1.00 59.91 O
ATOM 5 O5' C A 344 53.265 124.476 16.320 1.00 58.33 O
ATOM 6 C5' C A 344 53.071 123.341 17.183 1.00 58.02 C
ATOM 7 C4' C A 344 52.037 122.413 16.596 1.00 57.52 C
ATOM 8 O4' C A 344 50.795 123.144 16.408 1.00 57.91 O
ATOM 9 C3' C A 344 52.359 121.858 15.219 1.00 57.48 C
ATOM 10 O3' C A 344 53.206 120.713 15.327 1.00 59.13 O
ATOM 11 C2' C A 344 50.973 121.520 14.681 1.00 58.31 C
ATOM 12 O2' C A 344 50.467 120.305 15.194 1.00 57.87 O
ATOM 13 C1' C A 344 50.136 122.672 15.246 1.00 58.52 C
ATOM 14 N1 C A 344 49.953 123.803 14.317 1.00 60.39 N
ATOM 15 C2 C A 344 48.845 123.799 13.449 1.00 60.53 C
ATOM 16 O2 C A 344 48.051 122.846 13.485 1.00 60.26 O
ATOM 17 N3 C A 344 48.671 124.834 12.596 1.00 60.89 N
ATOM 18 C4 C A 344 49.545 125.844 12.584 1.00 61.33 C
ATOM 19 N4 C A 344 49.330 126.847 11.729 1.00 61.10 N
ATOM 20 C5 C A 344 50.680 125.873 13.450 1.00 61.27 C
ATOM 21 C6 C A 344 50.843 124.844 14.291 1.00 61.15 C
ATOM 22 P A A 345 54.234 120.347 14.140 1.00 61.14 P
ATOM 23 OP1 A A 345 53.447 120.011 12.924 1.00 60.54 O
ATOM 24 OP2 A A 345 55.232 119.371 14.659 1.00 59.34 O
ATOM 25 O5' A A 345 54.995 121.711 13.851 1.00 61.28 O
TER
ATOM 1 O3' C B 344 53.206 120.713 15.327 1.00 59.13 O
ATOM 2 P A B 345 54.234 120.347 14.140 1.00 61.14 P
ATOM 3 OP1 A B 345 53.447 120.011 12.924 1.00 60.54 O
ATOM 4 OP2 A B 345 55.232 119.371 14.659 1.00 59.34 O
ATOM 5 O5' A B 345 54.995 121.711 13.851 1.00 61.28 O
ATOM 6 C5' A B 345 56.126 121.743 12.972 1.00 63.00 C
ATOM 7 C4' A B 345 56.157 123.046 12.218 1.00 64.12 C
ATOM 8 O4' A B 345 55.124 123.044 11.190 1.00 65.18 O
ATOM 9 C3' A B 345 55.919 124.292 13.065 1.00 64.74 C
ATOM 10 O3' A B 345 56.749 125.336 12.586 1.00 66.34 O
ATOM 11 C2' A B 345 54.447 124.600 12.798 1.00 65.27 C
ATOM 12 O2' A B 345 54.104 125.962 12.967 1.00 64.87 O
ATOM 13 C1' A B 345 54.315 124.192 11.333 1.00 65.10 C
ATOM 14 N9 A B 345 52.945 123.869 10.926 1.00 65.89 N
ATOM 15 C8 A B 345 52.191 122.765 11.249 1.00 66.62 C
ATOM 16 N7 A B 345 50.978 122.786 10.746 1.00 66.83 N
ATOM 17 C5 A B 345 50.929 123.981 10.038 1.00 66.66 C
ATOM 18 C6 A B 345 49.908 124.598 9.277 1.00 66.37 C
ATOM 19 N6 A B 345 48.693 124.073 9.095 1.00 65.49 N
ATOM 20 N1 A B 345 50.187 125.791 8.705 1.00 65.87 N
ATOM 21 C2 A B 345 51.407 126.320 8.883 1.00 66.70 C
ATOM 22 N3 A B 345 52.446 125.839 9.570 1.00 66.48 N
ATOM 23 C4 A B 345 52.138 124.654 10.133 1.00 66.83 C
ATOM 24 P G B 346 58.172 125.601 13.283 1.00 66.87 P
ATOM 25 OP1 G B 346 58.563 124.375 14.015 1.00 68.08 O
ATOM 26 OP2 G B 346 58.089 126.893 14.003 1.00 66.83 O
ATOM 27 O5' G B 346 59.178 125.742 12.055 1.00 69.26 O
TER
Atoms:
C2: (48.845,123.799,13.449)
OP1: (55.505,125.086,17.238)
OP2: (54.261,126.640,15.624)
C4: (49.545,125.844,12.584)
O5': (53.265,124.476,16.320)
C3': (52.359,121.858,15.219)
C1': (50.136,122.672,15.246)
O4': (50.795,123.144,16.408)
C5': (53.071,123.341,17.183)
P: (54.229,125.670,16.737)
O2: (48.051,122.846,13.485)
C4': (52.037,122.413,16.596)
C2': (50.973,121.520,14.681)
O2': (50.467,120.305,15.194)
N1: (49.953,123.803,14.317)
N3: (48.671,124.834,12.596)
N4: (49.330,126.847,11.729)
C6: (50.843,124.844,14.291)
C5: (50.680,125.873,13.450)
O3': (53.206,120.713,15.327)
OP1: (55.505,125.086,17.238)
OP2: (54.261,126.640,15.624)
C4: (49.545,125.844,12.584)
O5': (53.265,124.476,16.320)
C3': (52.359,121.858,15.219)
C1': (50.136,122.672,15.246)
O4': (50.795,123.144,16.408)
C5': (53.071,123.341,17.183)
P: (54.229,125.670,16.737)
O2: (48.051,122.846,13.485)
C4': (52.037,122.413,16.596)
C2': (50.973,121.520,14.681)
O2': (50.467,120.305,15.194)
N1: (49.953,123.803,14.317)
N3: (48.671,124.834,12.596)
N4: (49.330,126.847,11.729)
C6: (50.843,124.844,14.291)
C5: (50.680,125.873,13.450)
O3': (53.206,120.713,15.327)
OP1: (53.447,120.011,12.924)
OP2: (55.232,119.371,14.659)
C3': (55.919,124.292,13.065)
C1': (54.315,124.192,11.333)
C5': (56.126,121.743,12.972)
O4': (55.124,123.044,11.190)
C8: (52.191,122.765,11.249)
O2': (54.104,125.962,12.967)
C6: (49.908,124.598,9.277)
C5: (50.929,123.981,10.038)
C4: (52.138,124.654,10.133)
P: (54.234,120.347,14.140)
C4': (56.157,123.046,12.218)
C2': (54.447,124.600,12.798)
C2: (51.407,126.320,8.883)
N1: (50.187,125.791,8.705)
N3: (52.446,125.839,9.570)
N6: (48.693,124.073,9.095)
N7: (50.978,122.786,10.746)
N9: (52.945,123.869,10.926)
O5': (54.995,121.711,13.851)
O3': (56.749,125.336,12.586)
OP2: (55.232,119.371,14.659)
C3': (55.919,124.292,13.065)
C1': (54.315,124.192,11.333)
C5': (56.126,121.743,12.972)
O4': (55.124,123.044,11.190)
C8: (52.191,122.765,11.249)
O2': (54.104,125.962,12.967)
C6: (49.908,124.598,9.277)
C5: (50.929,123.981,10.038)
C4: (52.138,124.654,10.133)
P: (54.234,120.347,14.140)
C4': (56.157,123.046,12.218)
C2': (54.447,124.600,12.798)
C2: (51.407,126.320,8.883)
N1: (50.187,125.791,8.705)
N3: (52.446,125.839,9.570)
N6: (48.693,124.073,9.095)
N7: (50.978,122.786,10.746)
N9: (52.945,123.869,10.926)
O5': (54.995,121.711,13.851)
O3': (56.749,125.336,12.586)
Image (generated by PyMOL):