Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:139:136
Extra
PDB:
ATOM 1 O3' G A 38 34.956 -24.013 82.400 1.00 36.06 O
ATOM 2 P C A 39 35.707 -24.249 83.788 1.00 39.61 P
ATOM 3 OP1 C A 39 36.436 -23.048 84.098 1.00 39.53 O
ATOM 4 OP2 C A 39 36.461 -25.447 83.620 1.00 39.70 O
ATOM 5 O5' C A 39 34.558 -24.502 84.858 1.00 39.77 O
ATOM 6 C5' C A 39 33.170 -24.431 84.534 1.00 39.75 C
ATOM 7 C4' C A 39 32.392 -25.559 85.159 1.00 39.94 C
ATOM 8 O4' C A 39 32.386 -26.675 84.251 1.00 39.96 O
ATOM 9 C3' C A 39 32.950 -26.129 86.448 1.00 40.13 C
ATOM 10 O3' C A 39 32.573 -25.382 87.581 1.00 40.21 O
ATOM 11 C2' C A 39 32.433 -27.565 86.449 1.00 40.30 C
ATOM 12 O2' C A 39 31.089 -27.641 86.934 1.00 40.40 O
ATOM 13 C1' C A 39 32.437 -27.890 84.953 1.00 40.16 C
ATOM 14 N1 C A 39 33.669 -28.614 84.527 1.00 40.17 N
ATOM 15 C2 C A 39 33.800 -29.946 84.880 1.00 40.36 C
ATOM 16 O2 C A 39 32.917 -30.437 85.545 1.00 40.51 O
ATOM 17 N3 C A 39 34.887 -30.644 84.527 1.00 40.39 N
ATOM 18 C4 C A 39 35.841 -30.035 83.809 1.00 40.23 C
ATOM 19 N4 C A 39 36.875 -30.798 83.479 1.00 40.29 N
ATOM 20 C5 C A 39 35.778 -28.657 83.402 1.00 40.02 C
ATOM 21 C6 C A 39 34.673 -27.986 83.784 1.00 40.00 C
ATOM 22 P A A 40 33.348 -25.547 88.982 1.00 41.54 P
ATOM 23 OP1 A A 40 33.149 -24.295 89.771 1.00 41.54 O
ATOM 24 OP2 A A 40 34.719 -25.996 88.686 1.00 41.52 O
ATOM 25 O5' A A 40 32.558 -26.725 89.640 1.00 41.76 O
TER
ATOM 1 O3' U B 35 44.801 -26.656 83.196 1.00 32.71 O
ATOM 2 P A B 36 43.707 -26.560 82.010 1.00 34.43 P
ATOM 3 OP1 A B 36 44.434 -26.650 80.724 1.00 34.34 O
ATOM 4 OP2 A B 36 42.887 -25.373 82.292 1.00 34.32 O
ATOM 5 O5' A B 36 42.801 -27.838 82.224 1.00 34.58 O
ATOM 6 C5' A B 36 43.275 -29.132 81.954 1.00 34.71 C
ATOM 7 C4' A B 36 42.543 -30.149 82.767 1.00 34.91 C
ATOM 8 O4' A B 36 42.145 -29.560 84.004 1.00 34.96 O
ATOM 9 C3' A B 36 41.245 -30.612 82.191 1.00 34.89 C
ATOM 10 O3' A B 36 41.420 -31.549 81.161 1.00 34.92 O
ATOM 11 C2' A B 36 40.496 -31.153 83.402 1.00 35.07 C
ATOM 12 O2' A B 36 40.950 -32.452 83.722 1.00 35.29 O
ATOM 13 C1' A B 36 40.987 -30.213 84.487 1.00 35.07 C
ATOM 14 N9 A B 36 39.992 -29.216 84.889 1.00 34.98 N
ATOM 15 C8 A B 36 39.920 -27.953 84.414 1.00 34.78 C
ATOM 16 N7 A B 36 38.907 -27.329 84.921 1.00 34.76 N
ATOM 17 C5 A B 36 38.305 -28.158 85.773 1.00 34.95 C
ATOM 18 C6 A B 36 37.194 -27.954 86.538 1.00 35.02 C
ATOM 19 N6 A B 36 36.551 -26.786 86.558 1.00 34.90 N
ATOM 20 N1 A B 36 36.793 -28.992 87.285 1.00 35.24 N
ATOM 21 C2 A B 36 37.488 -30.124 87.195 1.00 35.36 C
ATOM 22 N3 A B 36 38.573 -30.421 86.474 1.00 35.31 N
ATOM 23 C4 A B 36 38.949 -29.357 85.773 1.00 35.10 C
ATOM 24 P A B 37 40.196 -31.853 80.185 1.00 31.53 P
ATOM 25 OP1 A B 37 39.079 -32.224 81.045 1.00 31.65 O
ATOM 26 OP2 A B 37 40.693 -32.827 79.133 1.00 31.59 O
ATOM 27 O5' A B 37 39.945 -30.432 79.550 1.00 31.29 O
TER
ATOM 2 P C A 39 35.707 -24.249 83.788 1.00 39.61 P
ATOM 3 OP1 C A 39 36.436 -23.048 84.098 1.00 39.53 O
ATOM 4 OP2 C A 39 36.461 -25.447 83.620 1.00 39.70 O
ATOM 5 O5' C A 39 34.558 -24.502 84.858 1.00 39.77 O
ATOM 6 C5' C A 39 33.170 -24.431 84.534 1.00 39.75 C
ATOM 7 C4' C A 39 32.392 -25.559 85.159 1.00 39.94 C
ATOM 8 O4' C A 39 32.386 -26.675 84.251 1.00 39.96 O
ATOM 9 C3' C A 39 32.950 -26.129 86.448 1.00 40.13 C
ATOM 10 O3' C A 39 32.573 -25.382 87.581 1.00 40.21 O
ATOM 11 C2' C A 39 32.433 -27.565 86.449 1.00 40.30 C
ATOM 12 O2' C A 39 31.089 -27.641 86.934 1.00 40.40 O
ATOM 13 C1' C A 39 32.437 -27.890 84.953 1.00 40.16 C
ATOM 14 N1 C A 39 33.669 -28.614 84.527 1.00 40.17 N
ATOM 15 C2 C A 39 33.800 -29.946 84.880 1.00 40.36 C
ATOM 16 O2 C A 39 32.917 -30.437 85.545 1.00 40.51 O
ATOM 17 N3 C A 39 34.887 -30.644 84.527 1.00 40.39 N
ATOM 18 C4 C A 39 35.841 -30.035 83.809 1.00 40.23 C
ATOM 19 N4 C A 39 36.875 -30.798 83.479 1.00 40.29 N
ATOM 20 C5 C A 39 35.778 -28.657 83.402 1.00 40.02 C
ATOM 21 C6 C A 39 34.673 -27.986 83.784 1.00 40.00 C
ATOM 22 P A A 40 33.348 -25.547 88.982 1.00 41.54 P
ATOM 23 OP1 A A 40 33.149 -24.295 89.771 1.00 41.54 O
ATOM 24 OP2 A A 40 34.719 -25.996 88.686 1.00 41.52 O
ATOM 25 O5' A A 40 32.558 -26.725 89.640 1.00 41.76 O
TER
ATOM 1 O3' U B 35 44.801 -26.656 83.196 1.00 32.71 O
ATOM 2 P A B 36 43.707 -26.560 82.010 1.00 34.43 P
ATOM 3 OP1 A B 36 44.434 -26.650 80.724 1.00 34.34 O
ATOM 4 OP2 A B 36 42.887 -25.373 82.292 1.00 34.32 O
ATOM 5 O5' A B 36 42.801 -27.838 82.224 1.00 34.58 O
ATOM 6 C5' A B 36 43.275 -29.132 81.954 1.00 34.71 C
ATOM 7 C4' A B 36 42.543 -30.149 82.767 1.00 34.91 C
ATOM 8 O4' A B 36 42.145 -29.560 84.004 1.00 34.96 O
ATOM 9 C3' A B 36 41.245 -30.612 82.191 1.00 34.89 C
ATOM 10 O3' A B 36 41.420 -31.549 81.161 1.00 34.92 O
ATOM 11 C2' A B 36 40.496 -31.153 83.402 1.00 35.07 C
ATOM 12 O2' A B 36 40.950 -32.452 83.722 1.00 35.29 O
ATOM 13 C1' A B 36 40.987 -30.213 84.487 1.00 35.07 C
ATOM 14 N9 A B 36 39.992 -29.216 84.889 1.00 34.98 N
ATOM 15 C8 A B 36 39.920 -27.953 84.414 1.00 34.78 C
ATOM 16 N7 A B 36 38.907 -27.329 84.921 1.00 34.76 N
ATOM 17 C5 A B 36 38.305 -28.158 85.773 1.00 34.95 C
ATOM 18 C6 A B 36 37.194 -27.954 86.538 1.00 35.02 C
ATOM 19 N6 A B 36 36.551 -26.786 86.558 1.00 34.90 N
ATOM 20 N1 A B 36 36.793 -28.992 87.285 1.00 35.24 N
ATOM 21 C2 A B 36 37.488 -30.124 87.195 1.00 35.36 C
ATOM 22 N3 A B 36 38.573 -30.421 86.474 1.00 35.31 N
ATOM 23 C4 A B 36 38.949 -29.357 85.773 1.00 35.10 C
ATOM 24 P A B 37 40.196 -31.853 80.185 1.00 31.53 P
ATOM 25 OP1 A B 37 39.079 -32.224 81.045 1.00 31.65 O
ATOM 26 OP2 A B 37 40.693 -32.827 79.133 1.00 31.59 O
ATOM 27 O5' A B 37 39.945 -30.432 79.550 1.00 31.29 O
TER
Atoms:
C2: (33.800,-29.946,84.880)
OP1: (36.436,-23.048,84.098)
OP2: (36.461,-25.447,83.620)
C4: (35.841,-30.035,83.809)
O5': (34.558,-24.502,84.858)
C3': (32.950,-26.129,86.448)
C1': (32.437,-27.890,84.953)
O4': (32.386,-26.675,84.251)
C5': (33.170,-24.431,84.534)
P: (35.707,-24.249,83.788)
O2: (32.917,-30.437,85.545)
C4': (32.392,-25.559,85.159)
C2': (32.433,-27.565,86.449)
O2': (31.089,-27.641,86.934)
N1: (33.669,-28.614,84.527)
N3: (34.887,-30.644,84.527)
N4: (36.875,-30.798,83.479)
C6: (34.673,-27.986,83.784)
C5: (35.778,-28.657,83.402)
O3': (32.573,-25.382,87.581)
OP1: (36.436,-23.048,84.098)
OP2: (36.461,-25.447,83.620)
C4: (35.841,-30.035,83.809)
O5': (34.558,-24.502,84.858)
C3': (32.950,-26.129,86.448)
C1': (32.437,-27.890,84.953)
O4': (32.386,-26.675,84.251)
C5': (33.170,-24.431,84.534)
P: (35.707,-24.249,83.788)
O2: (32.917,-30.437,85.545)
C4': (32.392,-25.559,85.159)
C2': (32.433,-27.565,86.449)
O2': (31.089,-27.641,86.934)
N1: (33.669,-28.614,84.527)
N3: (34.887,-30.644,84.527)
N4: (36.875,-30.798,83.479)
C6: (34.673,-27.986,83.784)
C5: (35.778,-28.657,83.402)
O3': (32.573,-25.382,87.581)
OP1: (44.434,-26.650,80.724)
OP2: (42.887,-25.373,82.292)
C3': (41.245,-30.612,82.191)
C1': (40.987,-30.213,84.487)
C5': (43.275,-29.132,81.954)
O4': (42.145,-29.560,84.004)
C8: (39.920,-27.953,84.414)
O2': (40.950,-32.452,83.722)
C6: (37.194,-27.954,86.538)
C5: (38.305,-28.158,85.773)
C4: (38.949,-29.357,85.773)
P: (43.707,-26.560,82.010)
C4': (42.543,-30.149,82.767)
C2': (40.496,-31.153,83.402)
C2: (37.488,-30.124,87.195)
N1: (36.793,-28.992,87.285)
N3: (38.573,-30.421,86.474)
N6: (36.551,-26.786,86.558)
N7: (38.907,-27.329,84.921)
N9: (39.992,-29.216,84.889)
O5': (42.801,-27.838,82.224)
O3': (41.420,-31.549,81.161)
OP2: (42.887,-25.373,82.292)
C3': (41.245,-30.612,82.191)
C1': (40.987,-30.213,84.487)
C5': (43.275,-29.132,81.954)
O4': (42.145,-29.560,84.004)
C8: (39.920,-27.953,84.414)
O2': (40.950,-32.452,83.722)
C6: (37.194,-27.954,86.538)
C5: (38.305,-28.158,85.773)
C4: (38.949,-29.357,85.773)
P: (43.707,-26.560,82.010)
C4': (42.543,-30.149,82.767)
C2': (40.496,-31.153,83.402)
C2: (37.488,-30.124,87.195)
N1: (36.793,-28.992,87.285)
N3: (38.573,-30.421,86.474)
N6: (36.551,-26.786,86.558)
N7: (38.907,-27.329,84.921)
N9: (39.992,-29.216,84.889)
O5': (42.801,-27.838,82.224)
O3': (41.420,-31.549,81.161)
Image (generated by PyMOL):