Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:02367:02365
Extra
PDB:
ATOM 1 O3' G A2366 61.000 112.737 119.000 1.00 41.88 O
ATOM 2 P C A2367 61.103 114.324 118.749 1.00 43.88 P
ATOM 3 OP1 C A2367 60.382 115.043 119.819 1.00 43.32 O
ATOM 4 OP2 C A2367 60.755 114.600 117.336 1.00 46.77 O
ATOM 5 O5' C A2367 62.662 114.592 118.910 1.00 48.33 O
ATOM 6 C5' C A2367 63.296 114.432 120.179 1.00 55.84 C
ATOM 7 C4' C A2367 64.713 114.940 120.127 1.00 62.07 C
ATOM 8 O4' C A2367 65.187 115.133 121.481 1.00 66.40 O
ATOM 9 C3' C A2367 65.711 114.024 119.429 1.00 64.00 C
ATOM 10 O3' C A2367 66.062 114.621 118.176 1.00 64.74 O
ATOM 11 C2' C A2367 66.908 114.012 120.381 1.00 66.93 C
ATOM 12 O2' C A2367 67.744 115.129 120.160 1.00 67.82 O
ATOM 13 C1' C A2367 66.239 114.241 121.740 1.00 69.01 C
ATOM 14 N1 C A2367 65.663 113.113 122.499 1.00 73.45 N
ATOM 15 C2 C A2367 65.610 113.223 123.906 1.00 76.27 C
ATOM 16 O2 C A2367 66.132 114.211 124.458 1.00 78.98 O
ATOM 17 N3 C A2367 64.994 112.257 124.624 1.00 76.39 N
ATOM 18 C4 C A2367 64.457 111.206 124.004 1.00 76.81 C
ATOM 19 N4 C A2367 63.826 110.303 124.756 1.00 76.51 N
ATOM 20 C5 C A2367 64.537 111.040 122.584 1.00 76.49 C
ATOM 21 C6 C A2367 65.148 112.006 121.878 1.00 75.23 C
ATOM 22 P U A2368 66.701 113.734 116.992 1.00 64.99 P
ATOM 23 OP1 U A2368 67.173 114.695 115.961 1.00 65.54 O
ATOM 24 OP2 U A2368 65.725 112.677 116.607 1.00 65.03 O
ATOM 25 O5' U A2368 67.988 113.050 117.647 1.00 60.92 O
TER
ATOM 1 O3' U B2364 55.419 105.675 126.654 1.00 39.29 O
ATOM 2 P G B2365 55.349 106.081 125.098 1.00 40.21 P
ATOM 3 OP1 G B2365 54.000 106.662 124.889 1.00 39.44 O
ATOM 4 OP2 G B2365 55.792 104.918 124.274 1.00 39.55 O
ATOM 5 O5' G B2365 56.431 107.236 124.936 1.00 36.38 O
ATOM 6 C5' G B2365 56.487 108.332 125.860 1.00 35.79 C
ATOM 7 C4' G B2365 57.795 109.067 125.707 1.00 36.20 C
ATOM 8 O4' G B2365 58.894 108.190 126.050 1.00 34.75 O
ATOM 9 C3' G B2365 58.107 109.516 124.292 1.00 36.60 C
ATOM 10 O3' G B2365 57.460 110.753 124.040 1.00 35.91 O
ATOM 11 C2' G B2365 59.627 109.641 124.305 1.00 36.43 C
ATOM 12 O2' G B2365 60.076 110.855 124.875 1.00 39.60 O
ATOM 13 C1' G B2365 60.016 108.498 125.246 1.00 34.74 C
ATOM 14 N9 G B2365 60.502 107.265 124.635 1.00 33.45 N
ATOM 15 C8 G B2365 59.818 106.084 124.499 1.00 33.64 C
ATOM 16 N7 G B2365 60.549 105.123 124.003 1.00 34.34 N
ATOM 17 C5 G B2365 61.785 105.710 123.779 1.00 33.46 C
ATOM 18 C6 G B2365 62.995 105.152 123.275 1.00 33.56 C
ATOM 19 O6 G B2365 63.226 103.992 122.925 1.00 31.77 O
ATOM 20 N1 G B2365 64.003 106.103 123.206 1.00 33.32 N
ATOM 21 C2 G B2365 63.875 107.416 123.575 1.00 33.43 C
ATOM 22 N2 G B2365 64.968 108.168 123.431 1.00 34.36 N
ATOM 23 N3 G B2365 62.762 107.948 124.053 1.00 33.49 N
ATOM 24 C4 G B2365 61.764 107.041 124.132 1.00 33.99 C
ATOM 25 P G B2366 56.723 110.996 122.640 1.00 37.13 P
ATOM 26 OP1 G B2366 55.890 112.217 122.769 1.00 37.75 O
ATOM 27 OP2 G B2366 56.111 109.729 122.188 1.00 36.75 O
ATOM 28 O5' G B2366 57.908 111.322 121.642 1.00 37.64 O
TER
ATOM 2 P C A2367 61.103 114.324 118.749 1.00 43.88 P
ATOM 3 OP1 C A2367 60.382 115.043 119.819 1.00 43.32 O
ATOM 4 OP2 C A2367 60.755 114.600 117.336 1.00 46.77 O
ATOM 5 O5' C A2367 62.662 114.592 118.910 1.00 48.33 O
ATOM 6 C5' C A2367 63.296 114.432 120.179 1.00 55.84 C
ATOM 7 C4' C A2367 64.713 114.940 120.127 1.00 62.07 C
ATOM 8 O4' C A2367 65.187 115.133 121.481 1.00 66.40 O
ATOM 9 C3' C A2367 65.711 114.024 119.429 1.00 64.00 C
ATOM 10 O3' C A2367 66.062 114.621 118.176 1.00 64.74 O
ATOM 11 C2' C A2367 66.908 114.012 120.381 1.00 66.93 C
ATOM 12 O2' C A2367 67.744 115.129 120.160 1.00 67.82 O
ATOM 13 C1' C A2367 66.239 114.241 121.740 1.00 69.01 C
ATOM 14 N1 C A2367 65.663 113.113 122.499 1.00 73.45 N
ATOM 15 C2 C A2367 65.610 113.223 123.906 1.00 76.27 C
ATOM 16 O2 C A2367 66.132 114.211 124.458 1.00 78.98 O
ATOM 17 N3 C A2367 64.994 112.257 124.624 1.00 76.39 N
ATOM 18 C4 C A2367 64.457 111.206 124.004 1.00 76.81 C
ATOM 19 N4 C A2367 63.826 110.303 124.756 1.00 76.51 N
ATOM 20 C5 C A2367 64.537 111.040 122.584 1.00 76.49 C
ATOM 21 C6 C A2367 65.148 112.006 121.878 1.00 75.23 C
ATOM 22 P U A2368 66.701 113.734 116.992 1.00 64.99 P
ATOM 23 OP1 U A2368 67.173 114.695 115.961 1.00 65.54 O
ATOM 24 OP2 U A2368 65.725 112.677 116.607 1.00 65.03 O
ATOM 25 O5' U A2368 67.988 113.050 117.647 1.00 60.92 O
TER
ATOM 1 O3' U B2364 55.419 105.675 126.654 1.00 39.29 O
ATOM 2 P G B2365 55.349 106.081 125.098 1.00 40.21 P
ATOM 3 OP1 G B2365 54.000 106.662 124.889 1.00 39.44 O
ATOM 4 OP2 G B2365 55.792 104.918 124.274 1.00 39.55 O
ATOM 5 O5' G B2365 56.431 107.236 124.936 1.00 36.38 O
ATOM 6 C5' G B2365 56.487 108.332 125.860 1.00 35.79 C
ATOM 7 C4' G B2365 57.795 109.067 125.707 1.00 36.20 C
ATOM 8 O4' G B2365 58.894 108.190 126.050 1.00 34.75 O
ATOM 9 C3' G B2365 58.107 109.516 124.292 1.00 36.60 C
ATOM 10 O3' G B2365 57.460 110.753 124.040 1.00 35.91 O
ATOM 11 C2' G B2365 59.627 109.641 124.305 1.00 36.43 C
ATOM 12 O2' G B2365 60.076 110.855 124.875 1.00 39.60 O
ATOM 13 C1' G B2365 60.016 108.498 125.246 1.00 34.74 C
ATOM 14 N9 G B2365 60.502 107.265 124.635 1.00 33.45 N
ATOM 15 C8 G B2365 59.818 106.084 124.499 1.00 33.64 C
ATOM 16 N7 G B2365 60.549 105.123 124.003 1.00 34.34 N
ATOM 17 C5 G B2365 61.785 105.710 123.779 1.00 33.46 C
ATOM 18 C6 G B2365 62.995 105.152 123.275 1.00 33.56 C
ATOM 19 O6 G B2365 63.226 103.992 122.925 1.00 31.77 O
ATOM 20 N1 G B2365 64.003 106.103 123.206 1.00 33.32 N
ATOM 21 C2 G B2365 63.875 107.416 123.575 1.00 33.43 C
ATOM 22 N2 G B2365 64.968 108.168 123.431 1.00 34.36 N
ATOM 23 N3 G B2365 62.762 107.948 124.053 1.00 33.49 N
ATOM 24 C4 G B2365 61.764 107.041 124.132 1.00 33.99 C
ATOM 25 P G B2366 56.723 110.996 122.640 1.00 37.13 P
ATOM 26 OP1 G B2366 55.890 112.217 122.769 1.00 37.75 O
ATOM 27 OP2 G B2366 56.111 109.729 122.188 1.00 36.75 O
ATOM 28 O5' G B2366 57.908 111.322 121.642 1.00 37.64 O
TER
Atoms:
C2: (65.610,113.223,123.906)
OP1: (60.382,115.043,119.819)
OP2: (60.755,114.600,117.336)
C4: (64.457,111.206,124.004)
O5': (62.662,114.592,118.910)
C3': (65.711,114.024,119.429)
C1': (66.239,114.241,121.740)
O4': (65.187,115.133,121.481)
C5': (63.296,114.432,120.179)
P: (61.103,114.324,118.749)
O2: (66.132,114.211,124.458)
C4': (64.713,114.940,120.127)
C2': (66.908,114.012,120.381)
O2': (67.744,115.129,120.160)
N1: (65.663,113.113,122.499)
N3: (64.994,112.257,124.624)
N4: (63.826,110.303,124.756)
C6: (65.148,112.006,121.878)
C5: (64.537,111.040,122.584)
O3': (66.062,114.621,118.176)
OP1: (60.382,115.043,119.819)
OP2: (60.755,114.600,117.336)
C4: (64.457,111.206,124.004)
O5': (62.662,114.592,118.910)
C3': (65.711,114.024,119.429)
C1': (66.239,114.241,121.740)
O4': (65.187,115.133,121.481)
C5': (63.296,114.432,120.179)
P: (61.103,114.324,118.749)
O2: (66.132,114.211,124.458)
C4': (64.713,114.940,120.127)
C2': (66.908,114.012,120.381)
O2': (67.744,115.129,120.160)
N1: (65.663,113.113,122.499)
N3: (64.994,112.257,124.624)
N4: (63.826,110.303,124.756)
C6: (65.148,112.006,121.878)
C5: (64.537,111.040,122.584)
O3': (66.062,114.621,118.176)
OP1: (54.000,106.662,124.889)
OP2: (55.792,104.918,124.274)
C3': (58.107,109.516,124.292)
C1': (60.016,108.498,125.246)
C5': (56.487,108.332,125.860)
O6: (63.226,103.992,122.925)
O4': (58.894,108.190,126.050)
C8: (59.818,106.084,124.499)
C2: (63.875,107.416,123.575)
C6: (62.995,105.152,123.275)
C5: (61.785,105.710,123.779)
C4: (61.764,107.041,124.132)
P: (55.349,106.081,125.098)
C4': (57.795,109.067,125.707)
C2': (59.627,109.641,124.305)
O2': (60.076,110.855,124.875)
N1: (64.003,106.103,123.206)
N2: (64.968,108.168,123.431)
N3: (62.762,107.948,124.053)
N7: (60.549,105.123,124.003)
N9: (60.502,107.265,124.635)
O5': (56.431,107.236,124.936)
O3': (57.460,110.753,124.040)
OP2: (55.792,104.918,124.274)
C3': (58.107,109.516,124.292)
C1': (60.016,108.498,125.246)
C5': (56.487,108.332,125.860)
O6: (63.226,103.992,122.925)
O4': (58.894,108.190,126.050)
C8: (59.818,106.084,124.499)
C2: (63.875,107.416,123.575)
C6: (62.995,105.152,123.275)
C5: (61.785,105.710,123.779)
C4: (61.764,107.041,124.132)
P: (55.349,106.081,125.098)
C4': (57.795,109.067,125.707)
C2': (59.627,109.641,124.305)
O2': (60.076,110.855,124.875)
N1: (64.003,106.103,123.206)
N2: (64.968,108.168,123.431)
N3: (62.762,107.948,124.053)
N7: (60.549,105.123,124.003)
N9: (60.502,107.265,124.635)
O5': (56.431,107.236,124.936)
O3': (57.460,110.753,124.040)
Image (generated by PyMOL):