Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11073:12616
Extra
PDB:
ATOM 1 O3' U A1072 22.296 -15.166 35.110 1.00 45.15 O
ATOM 2 P A A1073 23.455 -16.090 35.770 1.00 42.38 P
ATOM 3 OP1 A A1073 23.921 -17.006 34.671 1.00 42.61 O
ATOM 4 OP2 A A1073 22.891 -16.681 37.037 1.00 42.22 O
ATOM 5 O5' A A1073 24.612 -15.039 36.149 1.00 42.14 O
ATOM 6 C5' A A1073 25.063 -14.075 35.214 1.00 42.24 C
ATOM 7 C4' A A1073 25.243 -12.705 35.840 1.00 42.05 C
ATOM 8 O4' A A1073 24.132 -12.372 36.696 1.00 41.98 O
ATOM 9 C3' A A1073 26.468 -12.499 36.708 1.00 41.75 C
ATOM 10 O3' A A1073 27.589 -12.196 35.927 1.00 41.80 O
ATOM 11 C2' A A1073 26.069 -11.326 37.573 1.00 41.60 C
ATOM 12 O2' A A1073 26.277 -10.125 36.856 1.00 41.69 O
ATOM 13 C1' A A1073 24.567 -11.521 37.717 1.00 41.72 C
ATOM 14 N9 A A1073 24.148 -12.094 39.008 1.00 41.54 N
ATOM 15 C8 A A1073 23.598 -13.333 39.133 1.00 41.61 C
ATOM 16 N7 A A1073 23.177 -13.576 40.337 1.00 41.44 N
ATOM 17 C5 A A1073 23.431 -12.415 41.033 1.00 41.26 C
ATOM 18 C6 A A1073 23.177 -12.051 42.349 1.00 41.06 C
ATOM 19 N6 A A1073 22.666 -12.868 43.247 1.00 40.99 N
ATOM 20 N1 A A1073 23.501 -10.809 42.738 1.00 40.94 N
ATOM 21 C2 A A1073 24.107 -9.994 41.861 1.00 41.01 C
ATOM 22 N3 A A1073 24.401 -10.253 40.598 1.00 41.20 N
ATOM 23 C4 A A1073 24.018 -11.486 40.234 1.00 41.32 C
ATOM 24 P A A1074 29.017 -12.826 36.252 1.00 38.96 P
ATOM 25 OP1 A A1074 29.866 -12.588 35.019 1.00 39.13 O
ATOM 26 OP2 A A1074 28.800 -14.216 36.716 1.00 38.94 O
ATOM 27 O5' A A1074 29.508 -11.937 37.461 1.00 38.67 O
TER
ATOM 1 O3' G B2615 17.978 -9.228 49.399 1.00 49.18 O
ATOM 2 P A B2616 19.202 -9.790 50.250 1.00 47.25 P
ATOM 3 OP1 A B2616 18.774 -11.095 50.859 1.00 47.24 O
ATOM 4 OP2 A B2616 19.688 -8.686 51.141 1.00 47.09 O
ATOM 5 O5' A B2616 20.246 -10.097 49.116 1.00 47.26 O
ATOM 6 C5' A B2616 20.006 -11.177 48.239 1.00 47.41 C
ATOM 7 C4' A B2616 21.179 -11.421 47.373 1.00 47.39 C
ATOM 8 O4' A B2616 21.234 -10.402 46.362 1.00 47.51 O
ATOM 9 C3' A B2616 22.523 -11.345 48.055 1.00 47.16 C
ATOM 10 O3' A B2616 22.849 -12.559 48.732 1.00 47.06 O
ATOM 11 C2' A B2616 23.415 -11.055 46.870 1.00 47.22 C
ATOM 12 O2' A B2616 23.553 -12.232 46.082 1.00 47.33 O
ATOM 13 C1' A B2616 22.546 -10.061 46.096 1.00 47.40 C
ATOM 14 N9 A B2616 22.737 -8.677 46.558 1.00 47.31 N
ATOM 15 C8 A B2616 21.959 -7.969 47.459 1.00 47.28 C
ATOM 16 N7 A B2616 22.398 -6.741 47.721 1.00 47.21 N
ATOM 17 C5 A B2616 23.523 -6.628 46.930 1.00 47.19 C
ATOM 18 C6 A B2616 24.438 -5.596 46.749 1.00 47.14 C
ATOM 19 N6 A B2616 24.372 -4.428 47.365 1.00 47.10 N
ATOM 20 N1 A B2616 25.466 -5.809 45.901 1.00 47.15 N
ATOM 21 C2 A B2616 25.537 -6.992 45.278 1.00 47.22 C
ATOM 22 N3 A B2616 24.742 -8.055 45.369 1.00 47.27 N
ATOM 23 C4 A B2616 23.742 -7.806 46.215 1.00 47.26 C
ATOM 24 P U B2617 23.796 -12.586 50.037 1.00 47.35 P
ATOM 25 OP1 U B2617 23.952 -13.988 50.425 1.00 47.33 O
ATOM 26 OP2 U B2617 23.232 -11.651 51.012 1.00 47.28 O
ATOM 27 O5' U B2617 25.166 -12.025 49.501 1.00 47.27 O
TER
ATOM 2 P A A1073 23.455 -16.090 35.770 1.00 42.38 P
ATOM 3 OP1 A A1073 23.921 -17.006 34.671 1.00 42.61 O
ATOM 4 OP2 A A1073 22.891 -16.681 37.037 1.00 42.22 O
ATOM 5 O5' A A1073 24.612 -15.039 36.149 1.00 42.14 O
ATOM 6 C5' A A1073 25.063 -14.075 35.214 1.00 42.24 C
ATOM 7 C4' A A1073 25.243 -12.705 35.840 1.00 42.05 C
ATOM 8 O4' A A1073 24.132 -12.372 36.696 1.00 41.98 O
ATOM 9 C3' A A1073 26.468 -12.499 36.708 1.00 41.75 C
ATOM 10 O3' A A1073 27.589 -12.196 35.927 1.00 41.80 O
ATOM 11 C2' A A1073 26.069 -11.326 37.573 1.00 41.60 C
ATOM 12 O2' A A1073 26.277 -10.125 36.856 1.00 41.69 O
ATOM 13 C1' A A1073 24.567 -11.521 37.717 1.00 41.72 C
ATOM 14 N9 A A1073 24.148 -12.094 39.008 1.00 41.54 N
ATOM 15 C8 A A1073 23.598 -13.333 39.133 1.00 41.61 C
ATOM 16 N7 A A1073 23.177 -13.576 40.337 1.00 41.44 N
ATOM 17 C5 A A1073 23.431 -12.415 41.033 1.00 41.26 C
ATOM 18 C6 A A1073 23.177 -12.051 42.349 1.00 41.06 C
ATOM 19 N6 A A1073 22.666 -12.868 43.247 1.00 40.99 N
ATOM 20 N1 A A1073 23.501 -10.809 42.738 1.00 40.94 N
ATOM 21 C2 A A1073 24.107 -9.994 41.861 1.00 41.01 C
ATOM 22 N3 A A1073 24.401 -10.253 40.598 1.00 41.20 N
ATOM 23 C4 A A1073 24.018 -11.486 40.234 1.00 41.32 C
ATOM 24 P A A1074 29.017 -12.826 36.252 1.00 38.96 P
ATOM 25 OP1 A A1074 29.866 -12.588 35.019 1.00 39.13 O
ATOM 26 OP2 A A1074 28.800 -14.216 36.716 1.00 38.94 O
ATOM 27 O5' A A1074 29.508 -11.937 37.461 1.00 38.67 O
TER
ATOM 1 O3' G B2615 17.978 -9.228 49.399 1.00 49.18 O
ATOM 2 P A B2616 19.202 -9.790 50.250 1.00 47.25 P
ATOM 3 OP1 A B2616 18.774 -11.095 50.859 1.00 47.24 O
ATOM 4 OP2 A B2616 19.688 -8.686 51.141 1.00 47.09 O
ATOM 5 O5' A B2616 20.246 -10.097 49.116 1.00 47.26 O
ATOM 6 C5' A B2616 20.006 -11.177 48.239 1.00 47.41 C
ATOM 7 C4' A B2616 21.179 -11.421 47.373 1.00 47.39 C
ATOM 8 O4' A B2616 21.234 -10.402 46.362 1.00 47.51 O
ATOM 9 C3' A B2616 22.523 -11.345 48.055 1.00 47.16 C
ATOM 10 O3' A B2616 22.849 -12.559 48.732 1.00 47.06 O
ATOM 11 C2' A B2616 23.415 -11.055 46.870 1.00 47.22 C
ATOM 12 O2' A B2616 23.553 -12.232 46.082 1.00 47.33 O
ATOM 13 C1' A B2616 22.546 -10.061 46.096 1.00 47.40 C
ATOM 14 N9 A B2616 22.737 -8.677 46.558 1.00 47.31 N
ATOM 15 C8 A B2616 21.959 -7.969 47.459 1.00 47.28 C
ATOM 16 N7 A B2616 22.398 -6.741 47.721 1.00 47.21 N
ATOM 17 C5 A B2616 23.523 -6.628 46.930 1.00 47.19 C
ATOM 18 C6 A B2616 24.438 -5.596 46.749 1.00 47.14 C
ATOM 19 N6 A B2616 24.372 -4.428 47.365 1.00 47.10 N
ATOM 20 N1 A B2616 25.466 -5.809 45.901 1.00 47.15 N
ATOM 21 C2 A B2616 25.537 -6.992 45.278 1.00 47.22 C
ATOM 22 N3 A B2616 24.742 -8.055 45.369 1.00 47.27 N
ATOM 23 C4 A B2616 23.742 -7.806 46.215 1.00 47.26 C
ATOM 24 P U B2617 23.796 -12.586 50.037 1.00 47.35 P
ATOM 25 OP1 U B2617 23.952 -13.988 50.425 1.00 47.33 O
ATOM 26 OP2 U B2617 23.232 -11.651 51.012 1.00 47.28 O
ATOM 27 O5' U B2617 25.166 -12.025 49.501 1.00 47.27 O
TER
Atoms:
OP1: (23.921,-17.006,34.671)
OP2: (22.891,-16.681,37.037)
C3': (26.468,-12.499,36.708)
C1': (24.567,-11.521,37.717)
C5': (25.063,-14.075,35.214)
O4': (24.132,-12.372,36.696)
C8: (23.598,-13.333,39.133)
O2': (26.277,-10.125,36.856)
C6: (23.177,-12.051,42.349)
C5: (23.431,-12.415,41.033)
C4: (24.018,-11.486,40.234)
P: (23.455,-16.090,35.770)
C4': (25.243,-12.705,35.840)
C2': (26.069,-11.326,37.573)
C2: (24.107,-9.994,41.861)
N1: (23.501,-10.809,42.738)
N3: (24.401,-10.253,40.598)
N6: (22.666,-12.868,43.247)
N7: (23.177,-13.576,40.337)
N9: (24.148,-12.094,39.008)
O5': (24.612,-15.039,36.149)
O3': (27.589,-12.196,35.927)
OP2: (22.891,-16.681,37.037)
C3': (26.468,-12.499,36.708)
C1': (24.567,-11.521,37.717)
C5': (25.063,-14.075,35.214)
O4': (24.132,-12.372,36.696)
C8: (23.598,-13.333,39.133)
O2': (26.277,-10.125,36.856)
C6: (23.177,-12.051,42.349)
C5: (23.431,-12.415,41.033)
C4: (24.018,-11.486,40.234)
P: (23.455,-16.090,35.770)
C4': (25.243,-12.705,35.840)
C2': (26.069,-11.326,37.573)
C2: (24.107,-9.994,41.861)
N1: (23.501,-10.809,42.738)
N3: (24.401,-10.253,40.598)
N6: (22.666,-12.868,43.247)
N7: (23.177,-13.576,40.337)
N9: (24.148,-12.094,39.008)
O5': (24.612,-15.039,36.149)
O3': (27.589,-12.196,35.927)
OP1: (18.774,-11.095,50.859)
OP2: (19.688,-8.686,51.141)
C3': (22.523,-11.345,48.055)
C1': (22.546,-10.061,46.096)
C5': (20.006,-11.177,48.239)
O4': (21.234,-10.402,46.362)
C8: (21.959,-7.969,47.459)
O2': (23.553,-12.232,46.082)
C6: (24.438,-5.596,46.749)
C5: (23.523,-6.628,46.930)
C4: (23.742,-7.806,46.215)
P: (19.202,-9.790,50.250)
C4': (21.179,-11.421,47.373)
C2': (23.415,-11.055,46.870)
C2: (25.537,-6.992,45.278)
N1: (25.466,-5.809,45.901)
N3: (24.742,-8.055,45.369)
N6: (24.372,-4.428,47.365)
N7: (22.398,-6.741,47.721)
N9: (22.737,-8.677,46.558)
O5': (20.246,-10.097,49.116)
O3': (22.849,-12.559,48.732)
OP2: (19.688,-8.686,51.141)
C3': (22.523,-11.345,48.055)
C1': (22.546,-10.061,46.096)
C5': (20.006,-11.177,48.239)
O4': (21.234,-10.402,46.362)
C8: (21.959,-7.969,47.459)
O2': (23.553,-12.232,46.082)
C6: (24.438,-5.596,46.749)
C5: (23.523,-6.628,46.930)
C4: (23.742,-7.806,46.215)
P: (19.202,-9.790,50.250)
C4': (21.179,-11.421,47.373)
C2': (23.415,-11.055,46.870)
C2: (25.537,-6.992,45.278)
N1: (25.466,-5.809,45.901)
N3: (24.742,-8.055,45.369)
N6: (24.372,-4.428,47.365)
N7: (22.398,-6.741,47.721)
N9: (22.737,-8.677,46.558)
O5': (20.246,-10.097,49.116)
O3': (22.849,-12.559,48.732)
Image (generated by PyMOL):