Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A244:A241
Extra
PDB:
ATOM 1 O3' A A 243 83.645 142.031 -8.862 1.00 89.99 O
ATOM 2 P C A 244 85.006 141.197 -8.711 1.00 90.85 P
ATOM 3 OP1 C A 244 85.212 140.522 -10.014 1.00 91.22 O
ATOM 4 OP2 C A 244 84.941 140.385 -7.470 1.00 90.14 O
ATOM 5 O5' C A 244 86.134 142.314 -8.522 1.00 90.37 O
ATOM 6 C5' C A 244 86.538 143.161 -9.619 1.00 89.20 C
ATOM 7 C4' C A 244 87.506 144.213 -9.142 1.00 88.38 C
ATOM 8 O4' C A 244 86.850 145.056 -8.159 1.00 88.87 O
ATOM 9 C3' C A 244 88.742 143.690 -8.433 1.00 87.77 C
ATOM 10 O3' C A 244 89.760 143.351 -9.368 1.00 86.15 O
ATOM 11 C2' C A 244 89.152 144.887 -7.588 1.00 88.87 C
ATOM 12 O2' C A 244 89.848 145.862 -8.344 1.00 89.44 O
ATOM 13 C1' C A 244 87.787 145.449 -7.169 1.00 89.74 C
ATOM 14 N1 C A 244 87.299 144.992 -5.846 1.00 90.85 N
ATOM 15 C2 C A 244 87.701 145.686 -4.671 1.00 91.45 C
ATOM 16 O2 C A 244 88.442 146.685 -4.765 1.00 90.93 O
ATOM 17 N3 C A 244 87.258 145.248 -3.465 1.00 91.89 N
ATOM 18 C4 C A 244 86.447 144.185 -3.393 1.00 91.64 C
ATOM 19 N4 C A 244 86.027 143.785 -2.181 1.00 91.34 N
ATOM 20 C5 C A 244 86.022 143.480 -4.558 1.00 91.45 C
ATOM 21 C6 C A 244 86.466 143.910 -5.748 1.00 91.12 C
ATOM 22 P G A 245 90.660 142.031 -9.142 1.00 85.93 P
ATOM 23 OP1 G A 245 91.852 142.195 -10.022 1.00 86.83 O
ATOM 24 OP2 G A 245 89.810 140.832 -9.287 1.00 84.57 O
ATOM 25 O5' G A 245 91.138 142.092 -7.617 1.00 85.67 O
TER
ATOM 1 O3' C B 240 81.220 139.538 4.427 1.00 74.66 O
ATOM 2 P U B 241 79.948 140.041 3.585 1.00 76.94 P
ATOM 3 OP1 U B 241 79.066 140.887 4.431 1.00 76.49 O
ATOM 4 OP2 U B 241 79.408 138.808 2.970 1.00 76.54 O
ATOM 5 O5' U B 241 80.583 140.983 2.467 1.00 79.04 O
ATOM 6 C5' U B 241 81.247 142.209 2.832 1.00 81.25 C
ATOM 7 C4' U B 241 81.935 142.809 1.633 1.00 83.43 C
ATOM 8 O4' U B 241 83.035 141.960 1.205 1.00 84.14 O
ATOM 9 C3' U B 241 81.077 142.927 0.387 1.00 84.28 C
ATOM 10 O3' U B 241 80.174 144.027 0.461 1.00 85.93 O
ATOM 11 C2' U B 241 82.133 143.051 -0.706 1.00 84.31 C
ATOM 12 O2' U B 241 82.749 144.321 -0.767 1.00 85.29 O
ATOM 13 C1' U B 241 83.185 142.057 -0.208 1.00 84.27 C
ATOM 14 N1 U B 241 83.019 140.723 -0.807 1.00 84.12 N
ATOM 15 C2 U B 241 83.658 140.473 -2.017 1.00 84.36 C
ATOM 16 O2 U B 241 84.376 141.298 -2.581 1.00 84.52 O
ATOM 17 N3 U B 241 83.429 139.224 -2.545 1.00 83.24 N
ATOM 18 C4 U B 241 82.653 138.226 -2.007 1.00 82.14 C
ATOM 19 O4 U B 241 82.491 137.179 -2.637 1.00 81.57 O
ATOM 20 C5 U B 241 82.051 138.552 -0.753 1.00 82.63 C
ATOM 21 C6 U B 241 82.250 139.756 -0.209 1.00 83.33 C
ATOM 22 P C B 242 78.635 143.825 0.024 1.00 87.64 P
ATOM 23 OP1 C B 242 78.004 145.169 0.010 1.00 86.36 O
ATOM 24 OP2 C B 242 78.038 142.739 0.851 1.00 88.22 O
ATOM 25 O5' C B 242 78.725 143.297 -1.474 1.00 87.50 O
TER
ATOM 2 P C A 244 85.006 141.197 -8.711 1.00 90.85 P
ATOM 3 OP1 C A 244 85.212 140.522 -10.014 1.00 91.22 O
ATOM 4 OP2 C A 244 84.941 140.385 -7.470 1.00 90.14 O
ATOM 5 O5' C A 244 86.134 142.314 -8.522 1.00 90.37 O
ATOM 6 C5' C A 244 86.538 143.161 -9.619 1.00 89.20 C
ATOM 7 C4' C A 244 87.506 144.213 -9.142 1.00 88.38 C
ATOM 8 O4' C A 244 86.850 145.056 -8.159 1.00 88.87 O
ATOM 9 C3' C A 244 88.742 143.690 -8.433 1.00 87.77 C
ATOM 10 O3' C A 244 89.760 143.351 -9.368 1.00 86.15 O
ATOM 11 C2' C A 244 89.152 144.887 -7.588 1.00 88.87 C
ATOM 12 O2' C A 244 89.848 145.862 -8.344 1.00 89.44 O
ATOM 13 C1' C A 244 87.787 145.449 -7.169 1.00 89.74 C
ATOM 14 N1 C A 244 87.299 144.992 -5.846 1.00 90.85 N
ATOM 15 C2 C A 244 87.701 145.686 -4.671 1.00 91.45 C
ATOM 16 O2 C A 244 88.442 146.685 -4.765 1.00 90.93 O
ATOM 17 N3 C A 244 87.258 145.248 -3.465 1.00 91.89 N
ATOM 18 C4 C A 244 86.447 144.185 -3.393 1.00 91.64 C
ATOM 19 N4 C A 244 86.027 143.785 -2.181 1.00 91.34 N
ATOM 20 C5 C A 244 86.022 143.480 -4.558 1.00 91.45 C
ATOM 21 C6 C A 244 86.466 143.910 -5.748 1.00 91.12 C
ATOM 22 P G A 245 90.660 142.031 -9.142 1.00 85.93 P
ATOM 23 OP1 G A 245 91.852 142.195 -10.022 1.00 86.83 O
ATOM 24 OP2 G A 245 89.810 140.832 -9.287 1.00 84.57 O
ATOM 25 O5' G A 245 91.138 142.092 -7.617 1.00 85.67 O
TER
ATOM 1 O3' C B 240 81.220 139.538 4.427 1.00 74.66 O
ATOM 2 P U B 241 79.948 140.041 3.585 1.00 76.94 P
ATOM 3 OP1 U B 241 79.066 140.887 4.431 1.00 76.49 O
ATOM 4 OP2 U B 241 79.408 138.808 2.970 1.00 76.54 O
ATOM 5 O5' U B 241 80.583 140.983 2.467 1.00 79.04 O
ATOM 6 C5' U B 241 81.247 142.209 2.832 1.00 81.25 C
ATOM 7 C4' U B 241 81.935 142.809 1.633 1.00 83.43 C
ATOM 8 O4' U B 241 83.035 141.960 1.205 1.00 84.14 O
ATOM 9 C3' U B 241 81.077 142.927 0.387 1.00 84.28 C
ATOM 10 O3' U B 241 80.174 144.027 0.461 1.00 85.93 O
ATOM 11 C2' U B 241 82.133 143.051 -0.706 1.00 84.31 C
ATOM 12 O2' U B 241 82.749 144.321 -0.767 1.00 85.29 O
ATOM 13 C1' U B 241 83.185 142.057 -0.208 1.00 84.27 C
ATOM 14 N1 U B 241 83.019 140.723 -0.807 1.00 84.12 N
ATOM 15 C2 U B 241 83.658 140.473 -2.017 1.00 84.36 C
ATOM 16 O2 U B 241 84.376 141.298 -2.581 1.00 84.52 O
ATOM 17 N3 U B 241 83.429 139.224 -2.545 1.00 83.24 N
ATOM 18 C4 U B 241 82.653 138.226 -2.007 1.00 82.14 C
ATOM 19 O4 U B 241 82.491 137.179 -2.637 1.00 81.57 O
ATOM 20 C5 U B 241 82.051 138.552 -0.753 1.00 82.63 C
ATOM 21 C6 U B 241 82.250 139.756 -0.209 1.00 83.33 C
ATOM 22 P C B 242 78.635 143.825 0.024 1.00 87.64 P
ATOM 23 OP1 C B 242 78.004 145.169 0.010 1.00 86.36 O
ATOM 24 OP2 C B 242 78.038 142.739 0.851 1.00 88.22 O
ATOM 25 O5' C B 242 78.725 143.297 -1.474 1.00 87.50 O
TER
Atoms:
C2: (87.701,145.686,-4.671)
OP1: (85.212,140.522,-10.014)
OP2: (84.941,140.385,-7.470)
C4: (86.447,144.185,-3.393)
O5': (86.134,142.314,-8.522)
C3': (88.742,143.690,-8.433)
C1': (87.787,145.449,-7.169)
O4': (86.850,145.056,-8.159)
C5': (86.538,143.161,-9.619)
P: (85.006,141.197,-8.711)
O2: (88.442,146.685,-4.765)
C4': (87.506,144.213,-9.142)
C2': (89.152,144.887,-7.588)
O2': (89.848,145.862,-8.344)
N1: (87.299,144.992,-5.846)
N3: (87.258,145.248,-3.465)
N4: (86.027,143.785,-2.181)
C6: (86.466,143.910,-5.748)
C5: (86.022,143.480,-4.558)
O3': (89.760,143.351,-9.368)
OP1: (85.212,140.522,-10.014)
OP2: (84.941,140.385,-7.470)
C4: (86.447,144.185,-3.393)
O5': (86.134,142.314,-8.522)
C3': (88.742,143.690,-8.433)
C1': (87.787,145.449,-7.169)
O4': (86.850,145.056,-8.159)
C5': (86.538,143.161,-9.619)
P: (85.006,141.197,-8.711)
O2: (88.442,146.685,-4.765)
C4': (87.506,144.213,-9.142)
C2': (89.152,144.887,-7.588)
O2': (89.848,145.862,-8.344)
N1: (87.299,144.992,-5.846)
N3: (87.258,145.248,-3.465)
N4: (86.027,143.785,-2.181)
C6: (86.466,143.910,-5.748)
C5: (86.022,143.480,-4.558)
O3': (89.760,143.351,-9.368)
C4: (82.653,138.226,-2.007)
N3: (83.429,139.224,-2.545)
OP1: (79.066,140.887,4.431)
OP2: (79.408,138.808,2.970)
C2: (83.658,140.473,-2.017)
C1': (83.185,142.057,-0.208)
C3': (81.077,142.927,0.387)
O5': (80.583,140.983,2.467)
O4': (83.035,141.960,1.205)
C5': (81.247,142.209,2.832)
P: (79.948,140.041,3.585)
C4': (81.935,142.809,1.633)
C2': (82.133,143.051,-0.706)
O2': (82.749,144.321,-0.767)
N1: (83.019,140.723,-0.807)
O4: (82.491,137.179,-2.637)
O2: (84.376,141.298,-2.581)
C6: (82.250,139.756,-0.209)
C5: (82.051,138.552,-0.753)
O3': (80.174,144.027,0.461)
N3: (83.429,139.224,-2.545)
OP1: (79.066,140.887,4.431)
OP2: (79.408,138.808,2.970)
C2: (83.658,140.473,-2.017)
C1': (83.185,142.057,-0.208)
C3': (81.077,142.927,0.387)
O5': (80.583,140.983,2.467)
O4': (83.035,141.960,1.205)
C5': (81.247,142.209,2.832)
P: (79.948,140.041,3.585)
C4': (81.935,142.809,1.633)
C2': (82.133,143.051,-0.706)
O2': (82.749,144.321,-0.767)
N1: (83.019,140.723,-0.807)
O4: (82.491,137.179,-2.637)
O2: (84.376,141.298,-2.581)
C6: (82.250,139.756,-0.209)
C5: (82.051,138.552,-0.753)
O3': (80.174,144.027,0.461)
Image (generated by PyMOL):