Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0244:0241
Extra
PDB:
ATOM 1 O3' A A 243 83.434 142.146 -9.158 1.00 83.63 O
ATOM 2 P C A 244 84.782 141.284 -8.996 1.00 85.14 P
ATOM 3 OP1 C A 244 85.013 140.603 -10.298 1.00 84.09 O
ATOM 4 OP2 C A 244 84.679 140.475 -7.755 1.00 86.38 O
ATOM 5 O5' C A 244 85.931 142.371 -8.772 1.00 83.26 O
ATOM 6 C5' C A 244 86.365 143.232 -9.844 1.00 80.29 C
ATOM 7 C4' C A 244 87.271 144.319 -9.311 1.00 78.69 C
ATOM 8 O4' C A 244 86.548 145.109 -8.330 1.00 78.14 O
ATOM 9 C3' C A 244 88.513 143.851 -8.568 1.00 78.34 C
ATOM 10 O3' C A 244 89.577 143.559 -9.464 1.00 76.58 O
ATOM 11 C2' C A 244 88.844 145.060 -7.704 1.00 78.93 C
ATOM 12 O2' C A 244 89.515 146.075 -8.423 1.00 79.18 O
ATOM 13 C1' C A 244 87.446 145.554 -7.325 1.00 79.33 C
ATOM 14 N1 C A 244 86.980 145.062 -6.012 1.00 81.31 N
ATOM 15 C2 C A 244 87.490 145.659 -4.842 1.00 81.77 C
ATOM 16 O2 C A 244 88.336 146.566 -4.941 1.00 80.99 O
ATOM 17 N3 C A 244 87.052 145.226 -3.635 1.00 81.77 N
ATOM 18 C4 C A 244 86.152 144.242 -3.565 1.00 81.78 C
ATOM 19 N4 C A 244 85.740 143.858 -2.353 1.00 82.17 N
ATOM 20 C5 C A 244 85.629 143.611 -4.733 1.00 81.75 C
ATOM 21 C6 C A 244 86.064 144.048 -5.922 1.00 81.52 C
ATOM 22 P G A 245 90.417 142.198 -9.299 1.00 76.99 P
ATOM 23 OP1 G A 245 91.602 142.313 -10.188 1.00 77.34 O
ATOM 24 OP2 G A 245 89.491 141.046 -9.450 1.00 76.78 O
ATOM 25 O5' G A 245 90.942 142.215 -7.796 1.00 76.20 O
TER
ATOM 1 O3' C B 240 80.956 139.677 4.216 1.00 60.01 O
ATOM 2 P U B 241 79.734 140.205 3.324 1.00 62.85 P
ATOM 3 OP1 U B 241 78.912 141.084 4.196 1.00 63.22 O
ATOM 4 OP2 U B 241 79.100 139.053 2.631 1.00 62.22 O
ATOM 5 O5' U B 241 80.443 141.098 2.215 1.00 64.89 O
ATOM 6 C5' U B 241 81.158 142.293 2.571 1.00 66.67 C
ATOM 7 C4' U B 241 81.757 142.924 1.339 1.00 68.45 C
ATOM 8 O4' U B 241 82.829 142.086 0.830 1.00 67.89 O
ATOM 9 C3' U B 241 80.820 143.057 0.150 1.00 70.54 C
ATOM 10 O3' U B 241 79.918 144.155 0.256 1.00 72.93 O
ATOM 11 C2' U B 241 81.800 143.193 -1.005 1.00 70.61 C
ATOM 12 O2' U B 241 82.366 144.485 -1.093 1.00 72.16 O
ATOM 13 C1' U B 241 82.883 142.197 -0.585 1.00 70.30 C
ATOM 14 N1 U B 241 82.679 140.866 -1.182 1.00 70.17 N
ATOM 15 C2 U B 241 83.448 140.529 -2.287 1.00 70.45 C
ATOM 16 O2 U B 241 84.302 141.265 -2.755 1.00 69.67 O
ATOM 17 N3 U B 241 83.180 139.294 -2.826 1.00 71.20 N
ATOM 18 C4 U B 241 82.249 138.379 -2.385 1.00 70.93 C
ATOM 19 O4 U B 241 82.095 137.322 -3.004 1.00 71.02 O
ATOM 20 C5 U B 241 81.514 138.791 -1.230 1.00 71.06 C
ATOM 21 C6 U B 241 81.748 139.987 -0.681 1.00 70.01 C
ATOM 22 P C B 242 78.385 143.964 -0.199 1.00 75.29 P
ATOM 23 OP1 C B 242 77.734 145.295 -0.192 1.00 75.31 O
ATOM 24 OP2 C B 242 77.799 142.854 0.602 1.00 75.16 O
ATOM 25 O5' C B 242 78.491 143.468 -1.710 1.00 76.15 O
TER
ATOM 2 P C A 244 84.782 141.284 -8.996 1.00 85.14 P
ATOM 3 OP1 C A 244 85.013 140.603 -10.298 1.00 84.09 O
ATOM 4 OP2 C A 244 84.679 140.475 -7.755 1.00 86.38 O
ATOM 5 O5' C A 244 85.931 142.371 -8.772 1.00 83.26 O
ATOM 6 C5' C A 244 86.365 143.232 -9.844 1.00 80.29 C
ATOM 7 C4' C A 244 87.271 144.319 -9.311 1.00 78.69 C
ATOM 8 O4' C A 244 86.548 145.109 -8.330 1.00 78.14 O
ATOM 9 C3' C A 244 88.513 143.851 -8.568 1.00 78.34 C
ATOM 10 O3' C A 244 89.577 143.559 -9.464 1.00 76.58 O
ATOM 11 C2' C A 244 88.844 145.060 -7.704 1.00 78.93 C
ATOM 12 O2' C A 244 89.515 146.075 -8.423 1.00 79.18 O
ATOM 13 C1' C A 244 87.446 145.554 -7.325 1.00 79.33 C
ATOM 14 N1 C A 244 86.980 145.062 -6.012 1.00 81.31 N
ATOM 15 C2 C A 244 87.490 145.659 -4.842 1.00 81.77 C
ATOM 16 O2 C A 244 88.336 146.566 -4.941 1.00 80.99 O
ATOM 17 N3 C A 244 87.052 145.226 -3.635 1.00 81.77 N
ATOM 18 C4 C A 244 86.152 144.242 -3.565 1.00 81.78 C
ATOM 19 N4 C A 244 85.740 143.858 -2.353 1.00 82.17 N
ATOM 20 C5 C A 244 85.629 143.611 -4.733 1.00 81.75 C
ATOM 21 C6 C A 244 86.064 144.048 -5.922 1.00 81.52 C
ATOM 22 P G A 245 90.417 142.198 -9.299 1.00 76.99 P
ATOM 23 OP1 G A 245 91.602 142.313 -10.188 1.00 77.34 O
ATOM 24 OP2 G A 245 89.491 141.046 -9.450 1.00 76.78 O
ATOM 25 O5' G A 245 90.942 142.215 -7.796 1.00 76.20 O
TER
ATOM 1 O3' C B 240 80.956 139.677 4.216 1.00 60.01 O
ATOM 2 P U B 241 79.734 140.205 3.324 1.00 62.85 P
ATOM 3 OP1 U B 241 78.912 141.084 4.196 1.00 63.22 O
ATOM 4 OP2 U B 241 79.100 139.053 2.631 1.00 62.22 O
ATOM 5 O5' U B 241 80.443 141.098 2.215 1.00 64.89 O
ATOM 6 C5' U B 241 81.158 142.293 2.571 1.00 66.67 C
ATOM 7 C4' U B 241 81.757 142.924 1.339 1.00 68.45 C
ATOM 8 O4' U B 241 82.829 142.086 0.830 1.00 67.89 O
ATOM 9 C3' U B 241 80.820 143.057 0.150 1.00 70.54 C
ATOM 10 O3' U B 241 79.918 144.155 0.256 1.00 72.93 O
ATOM 11 C2' U B 241 81.800 143.193 -1.005 1.00 70.61 C
ATOM 12 O2' U B 241 82.366 144.485 -1.093 1.00 72.16 O
ATOM 13 C1' U B 241 82.883 142.197 -0.585 1.00 70.30 C
ATOM 14 N1 U B 241 82.679 140.866 -1.182 1.00 70.17 N
ATOM 15 C2 U B 241 83.448 140.529 -2.287 1.00 70.45 C
ATOM 16 O2 U B 241 84.302 141.265 -2.755 1.00 69.67 O
ATOM 17 N3 U B 241 83.180 139.294 -2.826 1.00 71.20 N
ATOM 18 C4 U B 241 82.249 138.379 -2.385 1.00 70.93 C
ATOM 19 O4 U B 241 82.095 137.322 -3.004 1.00 71.02 O
ATOM 20 C5 U B 241 81.514 138.791 -1.230 1.00 71.06 C
ATOM 21 C6 U B 241 81.748 139.987 -0.681 1.00 70.01 C
ATOM 22 P C B 242 78.385 143.964 -0.199 1.00 75.29 P
ATOM 23 OP1 C B 242 77.734 145.295 -0.192 1.00 75.31 O
ATOM 24 OP2 C B 242 77.799 142.854 0.602 1.00 75.16 O
ATOM 25 O5' C B 242 78.491 143.468 -1.710 1.00 76.15 O
TER
Atoms:
C2: (87.490,145.659,-4.842)
OP1: (85.013,140.603,-10.298)
OP2: (84.679,140.475,-7.755)
C4: (86.152,144.242,-3.565)
O5': (85.931,142.371,-8.772)
C3': (88.513,143.851,-8.568)
C1': (87.446,145.554,-7.325)
O4': (86.548,145.109,-8.330)
C5': (86.365,143.232,-9.844)
P: (84.782,141.284,-8.996)
O2: (88.336,146.566,-4.941)
C4': (87.271,144.319,-9.311)
C2': (88.844,145.060,-7.704)
O2': (89.515,146.075,-8.423)
N1: (86.980,145.062,-6.012)
N3: (87.052,145.226,-3.635)
N4: (85.740,143.858,-2.353)
C6: (86.064,144.048,-5.922)
C5: (85.629,143.611,-4.733)
O3': (89.577,143.559,-9.464)
OP1: (85.013,140.603,-10.298)
OP2: (84.679,140.475,-7.755)
C4: (86.152,144.242,-3.565)
O5': (85.931,142.371,-8.772)
C3': (88.513,143.851,-8.568)
C1': (87.446,145.554,-7.325)
O4': (86.548,145.109,-8.330)
C5': (86.365,143.232,-9.844)
P: (84.782,141.284,-8.996)
O2: (88.336,146.566,-4.941)
C4': (87.271,144.319,-9.311)
C2': (88.844,145.060,-7.704)
O2': (89.515,146.075,-8.423)
N1: (86.980,145.062,-6.012)
N3: (87.052,145.226,-3.635)
N4: (85.740,143.858,-2.353)
C6: (86.064,144.048,-5.922)
C5: (85.629,143.611,-4.733)
O3': (89.577,143.559,-9.464)
C4: (82.249,138.379,-2.385)
N3: (83.180,139.294,-2.826)
OP1: (78.912,141.084,4.196)
OP2: (79.100,139.053,2.631)
C2: (83.448,140.529,-2.287)
C1': (82.883,142.197,-0.585)
C3': (80.820,143.057,0.150)
O5': (80.443,141.098,2.215)
O4': (82.829,142.086,0.830)
C5': (81.158,142.293,2.571)
P: (79.734,140.205,3.324)
C4': (81.757,142.924,1.339)
C2': (81.800,143.193,-1.005)
O2': (82.366,144.485,-1.093)
N1: (82.679,140.866,-1.182)
O4: (82.095,137.322,-3.004)
O2: (84.302,141.265,-2.755)
C6: (81.748,139.987,-0.681)
C5: (81.514,138.791,-1.230)
O3': (79.918,144.155,0.256)
N3: (83.180,139.294,-2.826)
OP1: (78.912,141.084,4.196)
OP2: (79.100,139.053,2.631)
C2: (83.448,140.529,-2.287)
C1': (82.883,142.197,-0.585)
C3': (80.820,143.057,0.150)
O5': (80.443,141.098,2.215)
O4': (82.829,142.086,0.830)
C5': (81.158,142.293,2.571)
P: (79.734,140.205,3.324)
C4': (81.757,142.924,1.339)
C2': (81.800,143.193,-1.005)
O2': (82.366,144.485,-1.093)
N1: (82.679,140.866,-1.182)
O4: (82.095,137.322,-3.004)
O2: (84.302,141.265,-2.755)
C6: (81.748,139.987,-0.681)
C5: (81.514,138.791,-1.230)
O3': (79.918,144.155,0.256)
Image (generated by PyMOL):