Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0244:0241
Extra
PDB:
ATOM 1 O3' A A 243 83.557 141.803 -9.173 1.00 84.66 O
ATOM 2 P C A 244 84.937 140.992 -9.012 1.00 86.01 P
ATOM 3 OP1 C A 244 85.230 140.344 -10.316 1.00 85.16 O
ATOM 4 OP2 C A 244 84.854 140.160 -7.783 1.00 86.71 O
ATOM 5 O5' C A 244 86.034 142.120 -8.755 1.00 84.38 O
ATOM 6 C5' C A 244 86.465 142.993 -9.813 1.00 81.26 C
ATOM 7 C4' C A 244 87.359 144.077 -9.261 1.00 80.01 C
ATOM 8 O4' C A 244 86.626 144.845 -8.271 1.00 79.55 O
ATOM 9 C3' C A 244 88.594 143.602 -8.515 1.00 79.14 C
ATOM 10 O3' C A 244 89.660 143.317 -9.406 1.00 78.16 O
ATOM 11 C2' C A 244 88.919 144.802 -7.640 1.00 79.79 C
ATOM 12 O2' C A 244 89.582 145.830 -8.349 1.00 79.19 O
ATOM 13 C1' C A 244 87.517 145.280 -7.255 1.00 80.60 C
ATOM 14 N1 C A 244 87.051 144.764 -5.948 1.00 82.24 N
ATOM 15 C2 C A 244 87.562 145.343 -4.768 1.00 82.41 C
ATOM 16 O2 C A 244 88.403 146.257 -4.852 1.00 81.41 O
ATOM 17 N3 C A 244 87.127 144.887 -3.570 1.00 82.50 N
ATOM 18 C4 C A 244 86.229 143.901 -3.514 1.00 81.87 C
ATOM 19 N4 C A 244 85.824 143.497 -2.308 1.00 81.46 N
ATOM 20 C5 C A 244 85.705 143.288 -4.692 1.00 81.91 C
ATOM 21 C6 C A 244 86.137 143.746 -5.874 1.00 82.36 C
ATOM 22 P G A 245 90.414 141.903 -9.325 1.00 79.03 P
ATOM 23 OP1 G A 245 91.533 141.960 -10.300 1.00 79.74 O
ATOM 24 OP2 G A 245 89.398 140.822 -9.431 1.00 78.73 O
ATOM 25 O5' G A 245 91.046 141.861 -7.864 1.00 77.82 O
TER
ATOM 1 O3' C B 240 81.073 139.424 4.132 1.00 59.74 O
ATOM 2 P U B 241 79.846 139.962 3.249 1.00 62.59 P
ATOM 3 OP1 U B 241 79.023 140.839 4.121 1.00 62.04 O
ATOM 4 OP2 U B 241 79.209 138.815 2.551 1.00 62.29 O
ATOM 5 O5' U B 241 80.556 140.854 2.142 1.00 65.55 O
ATOM 6 C5' U B 241 81.275 142.047 2.502 1.00 68.13 C
ATOM 7 C4' U B 241 81.878 142.680 1.273 1.00 70.16 C
ATOM 8 O4' U B 241 82.945 141.837 0.762 1.00 69.58 O
ATOM 9 C3' U B 241 80.942 142.823 0.084 1.00 72.01 C
ATOM 10 O3' U B 241 80.056 143.935 0.196 1.00 74.50 O
ATOM 11 C2' U B 241 81.923 142.958 -1.070 1.00 71.38 C
ATOM 12 O2' U B 241 82.491 144.249 -1.147 1.00 72.28 O
ATOM 13 C1' U B 241 83.006 141.961 -0.651 1.00 71.17 C
ATOM 14 N1 U B 241 82.831 140.633 -1.263 1.00 70.67 N
ATOM 15 C2 U B 241 83.638 140.312 -2.348 1.00 70.70 C
ATOM 16 O2 U B 241 84.489 141.066 -2.793 1.00 69.97 O
ATOM 17 N3 U B 241 83.411 139.073 -2.895 1.00 71.14 N
ATOM 18 C4 U B 241 82.485 138.143 -2.487 1.00 69.83 C
ATOM 19 O4 U B 241 82.374 137.087 -3.113 1.00 69.07 O
ATOM 20 C5 U B 241 81.702 138.539 -1.357 1.00 70.72 C
ATOM 21 C6 U B 241 81.896 139.739 -0.797 1.00 70.16 C
ATOM 22 P C B 242 78.521 143.772 -0.260 1.00 76.17 P
ATOM 23 OP1 C B 242 77.928 145.127 -0.344 1.00 76.76 O
ATOM 24 OP2 C B 242 77.885 142.744 0.607 1.00 75.91 O
ATOM 25 O5' C B 242 78.614 143.185 -1.738 1.00 77.90 O
TER
ATOM 2 P C A 244 84.937 140.992 -9.012 1.00 86.01 P
ATOM 3 OP1 C A 244 85.230 140.344 -10.316 1.00 85.16 O
ATOM 4 OP2 C A 244 84.854 140.160 -7.783 1.00 86.71 O
ATOM 5 O5' C A 244 86.034 142.120 -8.755 1.00 84.38 O
ATOM 6 C5' C A 244 86.465 142.993 -9.813 1.00 81.26 C
ATOM 7 C4' C A 244 87.359 144.077 -9.261 1.00 80.01 C
ATOM 8 O4' C A 244 86.626 144.845 -8.271 1.00 79.55 O
ATOM 9 C3' C A 244 88.594 143.602 -8.515 1.00 79.14 C
ATOM 10 O3' C A 244 89.660 143.317 -9.406 1.00 78.16 O
ATOM 11 C2' C A 244 88.919 144.802 -7.640 1.00 79.79 C
ATOM 12 O2' C A 244 89.582 145.830 -8.349 1.00 79.19 O
ATOM 13 C1' C A 244 87.517 145.280 -7.255 1.00 80.60 C
ATOM 14 N1 C A 244 87.051 144.764 -5.948 1.00 82.24 N
ATOM 15 C2 C A 244 87.562 145.343 -4.768 1.00 82.41 C
ATOM 16 O2 C A 244 88.403 146.257 -4.852 1.00 81.41 O
ATOM 17 N3 C A 244 87.127 144.887 -3.570 1.00 82.50 N
ATOM 18 C4 C A 244 86.229 143.901 -3.514 1.00 81.87 C
ATOM 19 N4 C A 244 85.824 143.497 -2.308 1.00 81.46 N
ATOM 20 C5 C A 244 85.705 143.288 -4.692 1.00 81.91 C
ATOM 21 C6 C A 244 86.137 143.746 -5.874 1.00 82.36 C
ATOM 22 P G A 245 90.414 141.903 -9.325 1.00 79.03 P
ATOM 23 OP1 G A 245 91.533 141.960 -10.300 1.00 79.74 O
ATOM 24 OP2 G A 245 89.398 140.822 -9.431 1.00 78.73 O
ATOM 25 O5' G A 245 91.046 141.861 -7.864 1.00 77.82 O
TER
ATOM 1 O3' C B 240 81.073 139.424 4.132 1.00 59.74 O
ATOM 2 P U B 241 79.846 139.962 3.249 1.00 62.59 P
ATOM 3 OP1 U B 241 79.023 140.839 4.121 1.00 62.04 O
ATOM 4 OP2 U B 241 79.209 138.815 2.551 1.00 62.29 O
ATOM 5 O5' U B 241 80.556 140.854 2.142 1.00 65.55 O
ATOM 6 C5' U B 241 81.275 142.047 2.502 1.00 68.13 C
ATOM 7 C4' U B 241 81.878 142.680 1.273 1.00 70.16 C
ATOM 8 O4' U B 241 82.945 141.837 0.762 1.00 69.58 O
ATOM 9 C3' U B 241 80.942 142.823 0.084 1.00 72.01 C
ATOM 10 O3' U B 241 80.056 143.935 0.196 1.00 74.50 O
ATOM 11 C2' U B 241 81.923 142.958 -1.070 1.00 71.38 C
ATOM 12 O2' U B 241 82.491 144.249 -1.147 1.00 72.28 O
ATOM 13 C1' U B 241 83.006 141.961 -0.651 1.00 71.17 C
ATOM 14 N1 U B 241 82.831 140.633 -1.263 1.00 70.67 N
ATOM 15 C2 U B 241 83.638 140.312 -2.348 1.00 70.70 C
ATOM 16 O2 U B 241 84.489 141.066 -2.793 1.00 69.97 O
ATOM 17 N3 U B 241 83.411 139.073 -2.895 1.00 71.14 N
ATOM 18 C4 U B 241 82.485 138.143 -2.487 1.00 69.83 C
ATOM 19 O4 U B 241 82.374 137.087 -3.113 1.00 69.07 O
ATOM 20 C5 U B 241 81.702 138.539 -1.357 1.00 70.72 C
ATOM 21 C6 U B 241 81.896 139.739 -0.797 1.00 70.16 C
ATOM 22 P C B 242 78.521 143.772 -0.260 1.00 76.17 P
ATOM 23 OP1 C B 242 77.928 145.127 -0.344 1.00 76.76 O
ATOM 24 OP2 C B 242 77.885 142.744 0.607 1.00 75.91 O
ATOM 25 O5' C B 242 78.614 143.185 -1.738 1.00 77.90 O
TER
Atoms:
C2: (87.562,145.343,-4.768)
OP1: (85.230,140.344,-10.316)
OP2: (84.854,140.160,-7.783)
C4: (86.229,143.901,-3.514)
O5': (86.034,142.120,-8.755)
C3': (88.594,143.602,-8.515)
C1': (87.517,145.280,-7.255)
O4': (86.626,144.845,-8.271)
C5': (86.465,142.993,-9.813)
P: (84.937,140.992,-9.012)
O2: (88.403,146.257,-4.852)
C4': (87.359,144.077,-9.261)
C2': (88.919,144.802,-7.640)
O2': (89.582,145.830,-8.349)
N1: (87.051,144.764,-5.948)
N3: (87.127,144.887,-3.570)
N4: (85.824,143.497,-2.308)
C6: (86.137,143.746,-5.874)
C5: (85.705,143.288,-4.692)
O3': (89.660,143.317,-9.406)
OP1: (85.230,140.344,-10.316)
OP2: (84.854,140.160,-7.783)
C4: (86.229,143.901,-3.514)
O5': (86.034,142.120,-8.755)
C3': (88.594,143.602,-8.515)
C1': (87.517,145.280,-7.255)
O4': (86.626,144.845,-8.271)
C5': (86.465,142.993,-9.813)
P: (84.937,140.992,-9.012)
O2: (88.403,146.257,-4.852)
C4': (87.359,144.077,-9.261)
C2': (88.919,144.802,-7.640)
O2': (89.582,145.830,-8.349)
N1: (87.051,144.764,-5.948)
N3: (87.127,144.887,-3.570)
N4: (85.824,143.497,-2.308)
C6: (86.137,143.746,-5.874)
C5: (85.705,143.288,-4.692)
O3': (89.660,143.317,-9.406)
C4: (82.485,138.143,-2.487)
N3: (83.411,139.073,-2.895)
OP1: (79.023,140.839,4.121)
OP2: (79.209,138.815,2.551)
C2: (83.638,140.312,-2.348)
C1': (83.006,141.961,-0.651)
C3': (80.942,142.823,0.084)
O5': (80.556,140.854,2.142)
O4': (82.945,141.837,0.762)
C5': (81.275,142.047,2.502)
P: (79.846,139.962,3.249)
C4': (81.878,142.680,1.273)
C2': (81.923,142.958,-1.070)
O2': (82.491,144.249,-1.147)
N1: (82.831,140.633,-1.263)
O4: (82.374,137.087,-3.113)
O2: (84.489,141.066,-2.793)
C6: (81.896,139.739,-0.797)
C5: (81.702,138.539,-1.357)
O3': (80.056,143.935,0.196)
N3: (83.411,139.073,-2.895)
OP1: (79.023,140.839,4.121)
OP2: (79.209,138.815,2.551)
C2: (83.638,140.312,-2.348)
C1': (83.006,141.961,-0.651)
C3': (80.942,142.823,0.084)
O5': (80.556,140.854,2.142)
O4': (82.945,141.837,0.762)
C5': (81.275,142.047,2.502)
P: (79.846,139.962,3.249)
C4': (81.878,142.680,1.273)
C2': (81.923,142.958,-1.070)
O2': (82.491,144.249,-1.147)
N1: (82.831,140.633,-1.263)
O4: (82.374,137.087,-3.113)
O2: (84.489,141.066,-2.793)
C6: (81.896,139.739,-0.797)
C5: (81.702,138.539,-1.357)
O3': (80.056,143.935,0.196)
Image (generated by PyMOL):