Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0244:0241
Extra
PDB:
ATOM 1 O3' A A 243 83.835 142.037 -8.964 1.00 99.73 O
ATOM 2 P C A 244 85.240 141.273 -8.774 1.00100.39 P
ATOM 3 OP1 C A 244 85.549 140.633 -10.075 1.00100.57 O
ATOM 4 OP2 C A 244 85.173 140.438 -7.543 1.00101.21 O
ATOM 5 O5' C A 244 86.303 142.436 -8.523 1.00 98.77 O
ATOM 6 C5' C A 244 86.709 143.317 -9.589 1.00 95.77 C
ATOM 7 C4' C A 244 87.542 144.451 -9.039 1.00 94.12 C
ATOM 8 O4' C A 244 86.761 145.192 -8.066 1.00 93.20 O
ATOM 9 C3' C A 244 88.799 144.051 -8.282 1.00 92.95 C
ATOM 10 O3' C A 244 89.885 143.834 -9.179 1.00 91.65 O
ATOM 11 C2' C A 244 89.047 145.271 -7.403 1.00 92.78 C
ATOM 12 O2' C A 244 89.678 146.327 -8.097 1.00 92.73 O
ATOM 13 C1' C A 244 87.618 145.697 -7.056 1.00 93.13 C
ATOM 14 N1 C A 244 87.144 145.226 -5.739 1.00 94.11 N
ATOM 15 C2 C A 244 87.592 145.890 -4.581 1.00 94.39 C
ATOM 16 O2 C A 244 88.375 146.850 -4.697 1.00 94.86 O
ATOM 17 N3 C A 244 87.161 145.468 -3.370 1.00 93.79 N
ATOM 18 C4 C A 244 86.325 144.432 -3.281 1.00 93.79 C
ATOM 19 N4 C A 244 85.929 144.051 -2.061 1.00 93.38 N
ATOM 20 C5 C A 244 85.856 143.739 -4.439 1.00 94.25 C
ATOM 21 C6 C A 244 86.286 144.165 -5.634 1.00 94.24 C
ATOM 22 P G A 245 90.659 142.424 -9.182 1.00 92.32 P
ATOM 23 OP1 G A 245 91.757 142.541 -10.174 1.00 92.48 O
ATOM 24 OP2 G A 245 89.657 141.340 -9.325 1.00 90.93 O
ATOM 25 O5' G A 245 91.321 142.321 -7.733 1.00 91.77 O
TER
ATOM 1 O3' C B 240 81.234 139.776 4.350 1.00 81.64 O
ATOM 2 P U B 241 80.075 140.378 3.425 1.00 84.19 P
ATOM 3 OP1 U B 241 79.292 141.315 4.271 1.00 84.16 O
ATOM 4 OP2 U B 241 79.381 139.268 2.717 1.00 83.99 O
ATOM 5 O5' U B 241 80.871 141.207 2.325 1.00 86.99 O
ATOM 6 C5' U B 241 81.602 142.395 2.671 1.00 88.56 C
ATOM 7 C4' U B 241 82.223 142.998 1.434 1.00 89.97 C
ATOM 8 O4' U B 241 83.287 142.139 0.942 1.00 89.70 O
ATOM 9 C3' U B 241 81.299 143.134 0.234 1.00 91.06 C
ATOM 10 O3' U B 241 80.427 144.257 0.334 1.00 92.29 O
ATOM 11 C2' U B 241 82.296 143.254 -0.908 1.00 90.97 C
ATOM 12 O2' U B 241 82.887 144.535 -0.972 1.00 92.73 O
ATOM 13 C1' U B 241 83.367 142.251 -0.473 1.00 90.30 C
ATOM 14 N1 U B 241 83.202 140.920 -1.083 1.00 90.26 N
ATOM 15 C2 U B 241 83.784 140.710 -2.332 1.00 90.73 C
ATOM 16 O2 U B 241 84.425 141.568 -2.923 1.00 91.65 O
ATOM 17 N3 U B 241 83.590 139.457 -2.865 1.00 89.87 N
ATOM 18 C4 U B 241 82.898 138.411 -2.299 1.00 88.75 C
ATOM 19 O4 U B 241 82.804 137.344 -2.915 1.00 87.51 O
ATOM 20 C5 U B 241 82.335 138.697 -1.010 1.00 89.38 C
ATOM 21 C6 U B 241 82.500 139.910 -0.460 1.00 89.38 C
ATOM 22 P C B 242 78.876 144.097 -0.071 1.00 94.07 P
ATOM 23 OP1 C B 242 78.254 145.439 0.008 1.00 93.83 O
ATOM 24 OP2 C B 242 78.293 142.967 0.708 1.00 94.53 O
ATOM 25 O5' C B 242 78.914 143.654 -1.601 1.00 95.18 O
TER
ATOM 2 P C A 244 85.240 141.273 -8.774 1.00100.39 P
ATOM 3 OP1 C A 244 85.549 140.633 -10.075 1.00100.57 O
ATOM 4 OP2 C A 244 85.173 140.438 -7.543 1.00101.21 O
ATOM 5 O5' C A 244 86.303 142.436 -8.523 1.00 98.77 O
ATOM 6 C5' C A 244 86.709 143.317 -9.589 1.00 95.77 C
ATOM 7 C4' C A 244 87.542 144.451 -9.039 1.00 94.12 C
ATOM 8 O4' C A 244 86.761 145.192 -8.066 1.00 93.20 O
ATOM 9 C3' C A 244 88.799 144.051 -8.282 1.00 92.95 C
ATOM 10 O3' C A 244 89.885 143.834 -9.179 1.00 91.65 O
ATOM 11 C2' C A 244 89.047 145.271 -7.403 1.00 92.78 C
ATOM 12 O2' C A 244 89.678 146.327 -8.097 1.00 92.73 O
ATOM 13 C1' C A 244 87.618 145.697 -7.056 1.00 93.13 C
ATOM 14 N1 C A 244 87.144 145.226 -5.739 1.00 94.11 N
ATOM 15 C2 C A 244 87.592 145.890 -4.581 1.00 94.39 C
ATOM 16 O2 C A 244 88.375 146.850 -4.697 1.00 94.86 O
ATOM 17 N3 C A 244 87.161 145.468 -3.370 1.00 93.79 N
ATOM 18 C4 C A 244 86.325 144.432 -3.281 1.00 93.79 C
ATOM 19 N4 C A 244 85.929 144.051 -2.061 1.00 93.38 N
ATOM 20 C5 C A 244 85.856 143.739 -4.439 1.00 94.25 C
ATOM 21 C6 C A 244 86.286 144.165 -5.634 1.00 94.24 C
ATOM 22 P G A 245 90.659 142.424 -9.182 1.00 92.32 P
ATOM 23 OP1 G A 245 91.757 142.541 -10.174 1.00 92.48 O
ATOM 24 OP2 G A 245 89.657 141.340 -9.325 1.00 90.93 O
ATOM 25 O5' G A 245 91.321 142.321 -7.733 1.00 91.77 O
TER
ATOM 1 O3' C B 240 81.234 139.776 4.350 1.00 81.64 O
ATOM 2 P U B 241 80.075 140.378 3.425 1.00 84.19 P
ATOM 3 OP1 U B 241 79.292 141.315 4.271 1.00 84.16 O
ATOM 4 OP2 U B 241 79.381 139.268 2.717 1.00 83.99 O
ATOM 5 O5' U B 241 80.871 141.207 2.325 1.00 86.99 O
ATOM 6 C5' U B 241 81.602 142.395 2.671 1.00 88.56 C
ATOM 7 C4' U B 241 82.223 142.998 1.434 1.00 89.97 C
ATOM 8 O4' U B 241 83.287 142.139 0.942 1.00 89.70 O
ATOM 9 C3' U B 241 81.299 143.134 0.234 1.00 91.06 C
ATOM 10 O3' U B 241 80.427 144.257 0.334 1.00 92.29 O
ATOM 11 C2' U B 241 82.296 143.254 -0.908 1.00 90.97 C
ATOM 12 O2' U B 241 82.887 144.535 -0.972 1.00 92.73 O
ATOM 13 C1' U B 241 83.367 142.251 -0.473 1.00 90.30 C
ATOM 14 N1 U B 241 83.202 140.920 -1.083 1.00 90.26 N
ATOM 15 C2 U B 241 83.784 140.710 -2.332 1.00 90.73 C
ATOM 16 O2 U B 241 84.425 141.568 -2.923 1.00 91.65 O
ATOM 17 N3 U B 241 83.590 139.457 -2.865 1.00 89.87 N
ATOM 18 C4 U B 241 82.898 138.411 -2.299 1.00 88.75 C
ATOM 19 O4 U B 241 82.804 137.344 -2.915 1.00 87.51 O
ATOM 20 C5 U B 241 82.335 138.697 -1.010 1.00 89.38 C
ATOM 21 C6 U B 241 82.500 139.910 -0.460 1.00 89.38 C
ATOM 22 P C B 242 78.876 144.097 -0.071 1.00 94.07 P
ATOM 23 OP1 C B 242 78.254 145.439 0.008 1.00 93.83 O
ATOM 24 OP2 C B 242 78.293 142.967 0.708 1.00 94.53 O
ATOM 25 O5' C B 242 78.914 143.654 -1.601 1.00 95.18 O
TER
Atoms:
C2: (87.592,145.890,-4.581)
OP1: (85.549,140.633,-10.075)
OP2: (85.173,140.438,-7.543)
C4: (86.325,144.432,-3.281)
O5': (86.303,142.436,-8.523)
C3': (88.799,144.051,-8.282)
C1': (87.618,145.697,-7.056)
O4': (86.761,145.192,-8.066)
C5': (86.709,143.317,-9.589)
P: (85.240,141.273,-8.774)
O2: (88.375,146.850,-4.697)
C4': (87.542,144.451,-9.039)
C2': (89.047,145.271,-7.403)
O2': (89.678,146.327,-8.097)
N1: (87.144,145.226,-5.739)
N3: (87.161,145.468,-3.370)
N4: (85.929,144.051,-2.061)
C6: (86.286,144.165,-5.634)
C5: (85.856,143.739,-4.439)
O3': (89.885,143.834,-9.179)
OP1: (85.549,140.633,-10.075)
OP2: (85.173,140.438,-7.543)
C4: (86.325,144.432,-3.281)
O5': (86.303,142.436,-8.523)
C3': (88.799,144.051,-8.282)
C1': (87.618,145.697,-7.056)
O4': (86.761,145.192,-8.066)
C5': (86.709,143.317,-9.589)
P: (85.240,141.273,-8.774)
O2: (88.375,146.850,-4.697)
C4': (87.542,144.451,-9.039)
C2': (89.047,145.271,-7.403)
O2': (89.678,146.327,-8.097)
N1: (87.144,145.226,-5.739)
N3: (87.161,145.468,-3.370)
N4: (85.929,144.051,-2.061)
C6: (86.286,144.165,-5.634)
C5: (85.856,143.739,-4.439)
O3': (89.885,143.834,-9.179)
C4: (82.898,138.411,-2.299)
N3: (83.590,139.457,-2.865)
OP1: (79.292,141.315,4.271)
OP2: (79.381,139.268,2.717)
C2: (83.784,140.710,-2.332)
C1': (83.367,142.251,-0.473)
C3': (81.299,143.134,0.234)
O5': (80.871,141.207,2.325)
O4': (83.287,142.139,0.942)
C5': (81.602,142.395,2.671)
P: (80.075,140.378,3.425)
C4': (82.223,142.998,1.434)
C2': (82.296,143.254,-0.908)
O2': (82.887,144.535,-0.972)
N1: (83.202,140.920,-1.083)
O4: (82.804,137.344,-2.915)
O2: (84.425,141.568,-2.923)
C6: (82.500,139.910,-0.460)
C5: (82.335,138.697,-1.010)
O3': (80.427,144.257,0.334)
N3: (83.590,139.457,-2.865)
OP1: (79.292,141.315,4.271)
OP2: (79.381,139.268,2.717)
C2: (83.784,140.710,-2.332)
C1': (83.367,142.251,-0.473)
C3': (81.299,143.134,0.234)
O5': (80.871,141.207,2.325)
O4': (83.287,142.139,0.942)
C5': (81.602,142.395,2.671)
P: (80.075,140.378,3.425)
C4': (82.223,142.998,1.434)
C2': (82.296,143.254,-0.908)
O2': (82.887,144.535,-0.972)
N1: (83.202,140.920,-1.083)
O4: (82.804,137.344,-2.915)
O2: (84.425,141.568,-2.923)
C6: (82.500,139.910,-0.460)
C5: (82.335,138.697,-1.010)
O3': (80.427,144.257,0.334)
Image (generated by PyMOL):