Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0244:0241
Extra
PDB:
ATOM 1 O3' A A 243 83.626 142.010 -9.244 1.00 87.18 O
ATOM 2 P C A 244 84.986 141.177 -9.032 1.00 88.50 P
ATOM 3 OP1 C A 244 85.283 140.462 -10.299 1.00 87.86 O
ATOM 4 OP2 C A 244 84.863 140.406 -7.765 1.00 89.67 O
ATOM 5 O5' C A 244 86.108 142.287 -8.807 1.00 87.01 O
ATOM 6 C5' C A 244 86.561 143.116 -9.889 1.00 85.36 C
ATOM 7 C4' C A 244 87.456 144.214 -9.368 1.00 84.47 C
ATOM 8 O4' C A 244 86.719 145.018 -8.409 1.00 85.08 O
ATOM 9 C3' C A 244 88.684 143.756 -8.600 1.00 84.28 C
ATOM 10 O3' C A 244 89.752 143.425 -9.478 1.00 82.42 O
ATOM 11 C2' C A 244 89.003 144.982 -7.754 1.00 85.43 C
ATOM 12 O2' C A 244 89.666 145.996 -8.485 1.00 85.87 O
ATOM 13 C1' C A 244 87.598 145.470 -7.390 1.00 86.20 C
ATOM 14 N1 C A 244 87.112 144.974 -6.084 1.00 88.34 N
ATOM 15 C2 C A 244 87.570 145.597 -4.901 1.00 89.59 C
ATOM 16 O2 C A 244 88.376 146.544 -4.980 1.00 90.27 O
ATOM 17 N3 C A 244 87.122 145.148 -3.705 1.00 89.61 N
ATOM 18 C4 C A 244 86.258 144.131 -3.653 1.00 89.26 C
ATOM 19 N4 C A 244 85.837 143.734 -2.451 1.00 89.30 N
ATOM 20 C5 C A 244 85.782 143.481 -4.832 1.00 89.06 C
ATOM 21 C6 C A 244 86.230 143.929 -6.012 1.00 88.77 C
ATOM 22 P G A 245 90.510 142.016 -9.322 1.00 81.87 P
ATOM 23 OP1 G A 245 91.676 142.032 -10.240 1.00 82.54 O
ATOM 24 OP2 G A 245 89.498 140.931 -9.436 1.00 81.39 O
ATOM 25 O5' G A 245 91.083 142.032 -7.836 1.00 80.67 O
TER
ATOM 1 O3' C B 240 81.146 139.634 4.064 1.00 63.42 O
ATOM 2 P U B 241 79.941 140.226 3.188 1.00 65.64 P
ATOM 3 OP1 U B 241 79.185 141.171 4.050 1.00 64.76 O
ATOM 4 OP2 U B 241 79.232 139.098 2.537 1.00 65.63 O
ATOM 5 O5' U B 241 80.683 141.057 2.051 1.00 69.18 O
ATOM 6 C5' U B 241 81.388 142.272 2.367 1.00 73.30 C
ATOM 7 C4' U B 241 81.915 142.915 1.108 1.00 75.72 C
ATOM 8 O4' U B 241 83.006 142.124 0.566 1.00 75.82 O
ATOM 9 C3' U B 241 80.935 143.001 -0.049 1.00 77.91 C
ATOM 10 O3' U B 241 79.983 144.051 0.081 1.00 79.93 O
ATOM 11 C2' U B 241 81.872 143.184 -1.233 1.00 77.94 C
ATOM 12 O2' U B 241 82.376 144.501 -1.325 1.00 78.00 O
ATOM 13 C1' U B 241 83.007 142.232 -0.851 1.00 77.57 C
ATOM 14 N1 U B 241 82.835 140.892 -1.436 1.00 78.25 N
ATOM 15 C2 U B 241 83.700 140.517 -2.451 1.00 79.12 C
ATOM 16 O2 U B 241 84.597 141.237 -2.861 1.00 79.66 O
ATOM 17 N3 U B 241 83.474 139.267 -2.975 1.00 79.61 N
ATOM 18 C4 U B 241 82.496 138.372 -2.600 1.00 79.00 C
ATOM 19 O4 U B 241 82.398 137.296 -3.195 1.00 79.06 O
ATOM 20 C5 U B 241 81.652 138.826 -1.539 1.00 79.19 C
ATOM 21 C6 U B 241 81.846 140.037 -1.005 1.00 78.38 C
ATOM 22 P C B 242 78.460 143.793 -0.372 1.00 81.39 P
ATOM 23 OP1 C B 242 77.745 145.093 -0.372 1.00 81.04 O
ATOM 24 OP2 C B 242 77.932 142.660 0.431 1.00 81.45 O
ATOM 25 O5' C B 242 78.575 143.294 -1.879 1.00 82.59 O
TER
ATOM 2 P C A 244 84.986 141.177 -9.032 1.00 88.50 P
ATOM 3 OP1 C A 244 85.283 140.462 -10.299 1.00 87.86 O
ATOM 4 OP2 C A 244 84.863 140.406 -7.765 1.00 89.67 O
ATOM 5 O5' C A 244 86.108 142.287 -8.807 1.00 87.01 O
ATOM 6 C5' C A 244 86.561 143.116 -9.889 1.00 85.36 C
ATOM 7 C4' C A 244 87.456 144.214 -9.368 1.00 84.47 C
ATOM 8 O4' C A 244 86.719 145.018 -8.409 1.00 85.08 O
ATOM 9 C3' C A 244 88.684 143.756 -8.600 1.00 84.28 C
ATOM 10 O3' C A 244 89.752 143.425 -9.478 1.00 82.42 O
ATOM 11 C2' C A 244 89.003 144.982 -7.754 1.00 85.43 C
ATOM 12 O2' C A 244 89.666 145.996 -8.485 1.00 85.87 O
ATOM 13 C1' C A 244 87.598 145.470 -7.390 1.00 86.20 C
ATOM 14 N1 C A 244 87.112 144.974 -6.084 1.00 88.34 N
ATOM 15 C2 C A 244 87.570 145.597 -4.901 1.00 89.59 C
ATOM 16 O2 C A 244 88.376 146.544 -4.980 1.00 90.27 O
ATOM 17 N3 C A 244 87.122 145.148 -3.705 1.00 89.61 N
ATOM 18 C4 C A 244 86.258 144.131 -3.653 1.00 89.26 C
ATOM 19 N4 C A 244 85.837 143.734 -2.451 1.00 89.30 N
ATOM 20 C5 C A 244 85.782 143.481 -4.832 1.00 89.06 C
ATOM 21 C6 C A 244 86.230 143.929 -6.012 1.00 88.77 C
ATOM 22 P G A 245 90.510 142.016 -9.322 1.00 81.87 P
ATOM 23 OP1 G A 245 91.676 142.032 -10.240 1.00 82.54 O
ATOM 24 OP2 G A 245 89.498 140.931 -9.436 1.00 81.39 O
ATOM 25 O5' G A 245 91.083 142.032 -7.836 1.00 80.67 O
TER
ATOM 1 O3' C B 240 81.146 139.634 4.064 1.00 63.42 O
ATOM 2 P U B 241 79.941 140.226 3.188 1.00 65.64 P
ATOM 3 OP1 U B 241 79.185 141.171 4.050 1.00 64.76 O
ATOM 4 OP2 U B 241 79.232 139.098 2.537 1.00 65.63 O
ATOM 5 O5' U B 241 80.683 141.057 2.051 1.00 69.18 O
ATOM 6 C5' U B 241 81.388 142.272 2.367 1.00 73.30 C
ATOM 7 C4' U B 241 81.915 142.915 1.108 1.00 75.72 C
ATOM 8 O4' U B 241 83.006 142.124 0.566 1.00 75.82 O
ATOM 9 C3' U B 241 80.935 143.001 -0.049 1.00 77.91 C
ATOM 10 O3' U B 241 79.983 144.051 0.081 1.00 79.93 O
ATOM 11 C2' U B 241 81.872 143.184 -1.233 1.00 77.94 C
ATOM 12 O2' U B 241 82.376 144.501 -1.325 1.00 78.00 O
ATOM 13 C1' U B 241 83.007 142.232 -0.851 1.00 77.57 C
ATOM 14 N1 U B 241 82.835 140.892 -1.436 1.00 78.25 N
ATOM 15 C2 U B 241 83.700 140.517 -2.451 1.00 79.12 C
ATOM 16 O2 U B 241 84.597 141.237 -2.861 1.00 79.66 O
ATOM 17 N3 U B 241 83.474 139.267 -2.975 1.00 79.61 N
ATOM 18 C4 U B 241 82.496 138.372 -2.600 1.00 79.00 C
ATOM 19 O4 U B 241 82.398 137.296 -3.195 1.00 79.06 O
ATOM 20 C5 U B 241 81.652 138.826 -1.539 1.00 79.19 C
ATOM 21 C6 U B 241 81.846 140.037 -1.005 1.00 78.38 C
ATOM 22 P C B 242 78.460 143.793 -0.372 1.00 81.39 P
ATOM 23 OP1 C B 242 77.745 145.093 -0.372 1.00 81.04 O
ATOM 24 OP2 C B 242 77.932 142.660 0.431 1.00 81.45 O
ATOM 25 O5' C B 242 78.575 143.294 -1.879 1.00 82.59 O
TER
Atoms:
C2: (87.570,145.597,-4.901)
OP1: (85.283,140.462,-10.299)
OP2: (84.863,140.406,-7.765)
C4: (86.258,144.131,-3.653)
O5': (86.108,142.287,-8.807)
C3': (88.684,143.756,-8.600)
C1': (87.598,145.470,-7.390)
O4': (86.719,145.018,-8.409)
C5': (86.561,143.116,-9.889)
P: (84.986,141.177,-9.032)
O2: (88.376,146.544,-4.980)
C4': (87.456,144.214,-9.368)
C2': (89.003,144.982,-7.754)
O2': (89.666,145.996,-8.485)
N1: (87.112,144.974,-6.084)
N3: (87.122,145.148,-3.705)
N4: (85.837,143.734,-2.451)
C6: (86.230,143.929,-6.012)
C5: (85.782,143.481,-4.832)
O3': (89.752,143.425,-9.478)
OP1: (85.283,140.462,-10.299)
OP2: (84.863,140.406,-7.765)
C4: (86.258,144.131,-3.653)
O5': (86.108,142.287,-8.807)
C3': (88.684,143.756,-8.600)
C1': (87.598,145.470,-7.390)
O4': (86.719,145.018,-8.409)
C5': (86.561,143.116,-9.889)
P: (84.986,141.177,-9.032)
O2: (88.376,146.544,-4.980)
C4': (87.456,144.214,-9.368)
C2': (89.003,144.982,-7.754)
O2': (89.666,145.996,-8.485)
N1: (87.112,144.974,-6.084)
N3: (87.122,145.148,-3.705)
N4: (85.837,143.734,-2.451)
C6: (86.230,143.929,-6.012)
C5: (85.782,143.481,-4.832)
O3': (89.752,143.425,-9.478)
C4: (82.496,138.372,-2.600)
N3: (83.474,139.267,-2.975)
OP1: (79.185,141.171,4.050)
OP2: (79.232,139.098,2.537)
C2: (83.700,140.517,-2.451)
C1': (83.007,142.232,-0.851)
C3': (80.935,143.001,-0.049)
O5': (80.683,141.057,2.051)
O4': (83.006,142.124,0.566)
C5': (81.388,142.272,2.367)
P: (79.941,140.226,3.188)
C4': (81.915,142.915,1.108)
C2': (81.872,143.184,-1.233)
O2': (82.376,144.501,-1.325)
N1: (82.835,140.892,-1.436)
O4: (82.398,137.296,-3.195)
O2: (84.597,141.237,-2.861)
C6: (81.846,140.037,-1.005)
C5: (81.652,138.826,-1.539)
O3': (79.983,144.051,0.081)
N3: (83.474,139.267,-2.975)
OP1: (79.185,141.171,4.050)
OP2: (79.232,139.098,2.537)
C2: (83.700,140.517,-2.451)
C1': (83.007,142.232,-0.851)
C3': (80.935,143.001,-0.049)
O5': (80.683,141.057,2.051)
O4': (83.006,142.124,0.566)
C5': (81.388,142.272,2.367)
P: (79.941,140.226,3.188)
C4': (81.915,142.915,1.108)
C2': (81.872,143.184,-1.233)
O2': (82.376,144.501,-1.325)
N1: (82.835,140.892,-1.436)
O4: (82.398,137.296,-3.195)
O2: (84.597,141.237,-2.861)
C6: (81.846,140.037,-1.005)
C5: (81.652,138.826,-1.539)
O3': (79.983,144.051,0.081)
Image (generated by PyMOL):