Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A65:A46
Extra
PDB:
ATOM 1 O3' A A 64 2.612 68.124 19.998 1.00 30.69 O
ATOM 2 P A A 65 4.087 68.221 20.636 1.00 35.95 P
ATOM 3 OP1 A A 65 4.609 69.581 20.346 1.00 34.69 O
ATOM 4 OP2 A A 65 4.820 67.040 20.123 1.00 37.80 O
ATOM 5 O5' A A 65 3.848 68.034 22.193 1.00 31.20 O
ATOM 6 C5' A A 65 3.121 69.006 22.926 1.00 32.86 C
ATOM 7 C4' A A 65 2.819 68.521 24.321 1.00 33.81 C
ATOM 8 O4' A A 65 2.024 67.306 24.261 1.00 31.78 O
ATOM 9 C3' A A 65 4.021 68.136 25.166 1.00 33.75 C
ATOM 10 O3' A A 65 4.642 69.253 25.770 1.00 35.41 O
ATOM 11 C2' A A 65 3.413 67.173 26.176 1.00 34.13 C
ATOM 12 O2' A A 65 2.711 67.881 27.185 1.00 38.60 O
ATOM 13 C1' A A 65 2.387 66.442 25.314 1.00 34.57 C
ATOM 14 N9 A A 65 2.965 65.219 24.731 1.00 32.63 N
ATOM 15 C8 A A 65 3.603 65.066 23.521 1.00 33.07 C
ATOM 16 N7 A A 65 4.018 63.839 23.303 1.00 32.19 N
ATOM 17 C5 A A 65 3.623 63.144 24.443 1.00 29.39 C
ATOM 18 C6 A A 65 3.752 61.791 24.835 1.00 33.50 C
ATOM 19 N6 A A 65 4.348 60.849 24.086 1.00 27.80 N
ATOM 20 N1 A A 65 3.241 61.436 26.043 1.00 31.72 N
ATOM 21 C2 A A 65 2.638 62.371 26.790 1.00 32.36 C
ATOM 22 N3 A A 65 2.457 63.666 26.529 1.00 32.32 N
ATOM 23 C4 A A 65 2.973 63.986 25.327 1.00 32.35 C
ATOM 24 P U A 66 6.214 69.536 25.633 1.00 38.64 P
ATOM 25 OP1 U A 66 6.478 70.636 26.589 1.00 33.29 O
ATOM 26 OP2 U A 66 6.553 69.683 24.189 1.00 33.50 O
ATOM 27 O5' U A 66 6.910 68.231 26.179 1.00 36.02 O
TER
ATOM 1 O3' A B 45 7.667 53.988 19.292 1.00 25.75 O
ATOM 2 P A B 46 6.080 54.078 19.107 1.00 26.29 P
ATOM 3 OP1 A B 46 5.582 52.702 19.320 1.00 28.02 O
ATOM 4 OP2 A B 46 5.820 54.772 17.841 1.00 26.61 O
ATOM 5 O5' A B 46 5.577 54.982 20.313 1.00 25.13 O
ATOM 6 C5' A B 46 5.834 54.665 21.676 1.00 25.08 C
ATOM 7 C4' A B 46 5.504 55.853 22.552 1.00 25.54 C
ATOM 8 O4' A B 46 6.353 56.974 22.195 1.00 26.30 O
ATOM 9 C3' A B 46 4.099 56.404 22.367 1.00 23.27 C
ATOM 10 O3' A B 46 3.152 55.675 23.111 1.00 30.33 O
ATOM 11 C2' A B 46 4.241 57.850 22.818 1.00 26.07 C
ATOM 12 O2' A B 46 4.320 57.914 24.236 1.00 27.77 O
ATOM 13 C1' A B 46 5.614 58.182 22.235 1.00 25.93 C
ATOM 14 N9 A B 46 5.473 58.694 20.858 1.00 26.51 N
ATOM 15 C8 A B 46 5.611 57.997 19.683 1.00 26.23 C
ATOM 16 N7 A B 46 5.395 58.729 18.608 1.00 24.72 N
ATOM 17 C5 A B 46 5.104 59.988 19.103 1.00 26.62 C
ATOM 18 C6 A B 46 4.796 61.207 18.465 1.00 27.31 C
ATOM 19 N6 A B 46 4.726 61.354 17.133 1.00 27.72 N
ATOM 20 N1 A B 46 4.554 62.271 19.252 1.00 26.54 N
ATOM 21 C2 A B 46 4.624 62.123 20.579 1.00 26.89 C
ATOM 22 N3 A B 46 4.910 61.037 21.289 1.00 28.31 N
ATOM 23 C4 A B 46 5.146 59.984 20.487 1.00 26.59 C
ATOM 24 P A B 47 1.796 55.182 22.427 1.00 28.67 P
ATOM 25 OP1 A B 47 1.234 54.264 23.435 1.00 30.79 O
ATOM 26 OP2 A B 47 2.027 54.682 21.048 1.00 28.19 O
ATOM 27 O5' A B 47 0.985 56.542 22.344 1.00 28.52 O
TER
ATOM 2 P A A 65 4.087 68.221 20.636 1.00 35.95 P
ATOM 3 OP1 A A 65 4.609 69.581 20.346 1.00 34.69 O
ATOM 4 OP2 A A 65 4.820 67.040 20.123 1.00 37.80 O
ATOM 5 O5' A A 65 3.848 68.034 22.193 1.00 31.20 O
ATOM 6 C5' A A 65 3.121 69.006 22.926 1.00 32.86 C
ATOM 7 C4' A A 65 2.819 68.521 24.321 1.00 33.81 C
ATOM 8 O4' A A 65 2.024 67.306 24.261 1.00 31.78 O
ATOM 9 C3' A A 65 4.021 68.136 25.166 1.00 33.75 C
ATOM 10 O3' A A 65 4.642 69.253 25.770 1.00 35.41 O
ATOM 11 C2' A A 65 3.413 67.173 26.176 1.00 34.13 C
ATOM 12 O2' A A 65 2.711 67.881 27.185 1.00 38.60 O
ATOM 13 C1' A A 65 2.387 66.442 25.314 1.00 34.57 C
ATOM 14 N9 A A 65 2.965 65.219 24.731 1.00 32.63 N
ATOM 15 C8 A A 65 3.603 65.066 23.521 1.00 33.07 C
ATOM 16 N7 A A 65 4.018 63.839 23.303 1.00 32.19 N
ATOM 17 C5 A A 65 3.623 63.144 24.443 1.00 29.39 C
ATOM 18 C6 A A 65 3.752 61.791 24.835 1.00 33.50 C
ATOM 19 N6 A A 65 4.348 60.849 24.086 1.00 27.80 N
ATOM 20 N1 A A 65 3.241 61.436 26.043 1.00 31.72 N
ATOM 21 C2 A A 65 2.638 62.371 26.790 1.00 32.36 C
ATOM 22 N3 A A 65 2.457 63.666 26.529 1.00 32.32 N
ATOM 23 C4 A A 65 2.973 63.986 25.327 1.00 32.35 C
ATOM 24 P U A 66 6.214 69.536 25.633 1.00 38.64 P
ATOM 25 OP1 U A 66 6.478 70.636 26.589 1.00 33.29 O
ATOM 26 OP2 U A 66 6.553 69.683 24.189 1.00 33.50 O
ATOM 27 O5' U A 66 6.910 68.231 26.179 1.00 36.02 O
TER
ATOM 1 O3' A B 45 7.667 53.988 19.292 1.00 25.75 O
ATOM 2 P A B 46 6.080 54.078 19.107 1.00 26.29 P
ATOM 3 OP1 A B 46 5.582 52.702 19.320 1.00 28.02 O
ATOM 4 OP2 A B 46 5.820 54.772 17.841 1.00 26.61 O
ATOM 5 O5' A B 46 5.577 54.982 20.313 1.00 25.13 O
ATOM 6 C5' A B 46 5.834 54.665 21.676 1.00 25.08 C
ATOM 7 C4' A B 46 5.504 55.853 22.552 1.00 25.54 C
ATOM 8 O4' A B 46 6.353 56.974 22.195 1.00 26.30 O
ATOM 9 C3' A B 46 4.099 56.404 22.367 1.00 23.27 C
ATOM 10 O3' A B 46 3.152 55.675 23.111 1.00 30.33 O
ATOM 11 C2' A B 46 4.241 57.850 22.818 1.00 26.07 C
ATOM 12 O2' A B 46 4.320 57.914 24.236 1.00 27.77 O
ATOM 13 C1' A B 46 5.614 58.182 22.235 1.00 25.93 C
ATOM 14 N9 A B 46 5.473 58.694 20.858 1.00 26.51 N
ATOM 15 C8 A B 46 5.611 57.997 19.683 1.00 26.23 C
ATOM 16 N7 A B 46 5.395 58.729 18.608 1.00 24.72 N
ATOM 17 C5 A B 46 5.104 59.988 19.103 1.00 26.62 C
ATOM 18 C6 A B 46 4.796 61.207 18.465 1.00 27.31 C
ATOM 19 N6 A B 46 4.726 61.354 17.133 1.00 27.72 N
ATOM 20 N1 A B 46 4.554 62.271 19.252 1.00 26.54 N
ATOM 21 C2 A B 46 4.624 62.123 20.579 1.00 26.89 C
ATOM 22 N3 A B 46 4.910 61.037 21.289 1.00 28.31 N
ATOM 23 C4 A B 46 5.146 59.984 20.487 1.00 26.59 C
ATOM 24 P A B 47 1.796 55.182 22.427 1.00 28.67 P
ATOM 25 OP1 A B 47 1.234 54.264 23.435 1.00 30.79 O
ATOM 26 OP2 A B 47 2.027 54.682 21.048 1.00 28.19 O
ATOM 27 O5' A B 47 0.985 56.542 22.344 1.00 28.52 O
TER
Atoms:
OP1: (4.609,69.581,20.346)
OP2: (4.820,67.040,20.123)
C3': (4.021,68.136,25.166)
C1': (2.387,66.442,25.314)
C5': (3.121,69.006,22.926)
O4': (2.024,67.306,24.261)
C8: (3.603,65.066,23.521)
O2': (2.711,67.881,27.185)
C6: (3.752,61.791,24.835)
C5: (3.623,63.144,24.443)
C4: (2.973,63.986,25.327)
P: (4.087,68.221,20.636)
C4': (2.819,68.521,24.321)
C2': (3.413,67.173,26.176)
C2: (2.638,62.371,26.790)
N1: (3.241,61.436,26.043)
N3: (2.457,63.666,26.529)
N6: (4.348,60.849,24.086)
N7: (4.018,63.839,23.303)
N9: (2.965,65.219,24.731)
O5': (3.848,68.034,22.193)
O3': (4.642,69.253,25.770)
OP2: (4.820,67.040,20.123)
C3': (4.021,68.136,25.166)
C1': (2.387,66.442,25.314)
C5': (3.121,69.006,22.926)
O4': (2.024,67.306,24.261)
C8: (3.603,65.066,23.521)
O2': (2.711,67.881,27.185)
C6: (3.752,61.791,24.835)
C5: (3.623,63.144,24.443)
C4: (2.973,63.986,25.327)
P: (4.087,68.221,20.636)
C4': (2.819,68.521,24.321)
C2': (3.413,67.173,26.176)
C2: (2.638,62.371,26.790)
N1: (3.241,61.436,26.043)
N3: (2.457,63.666,26.529)
N6: (4.348,60.849,24.086)
N7: (4.018,63.839,23.303)
N9: (2.965,65.219,24.731)
O5': (3.848,68.034,22.193)
O3': (4.642,69.253,25.770)
OP1: (5.582,52.702,19.320)
OP2: (5.820,54.772,17.841)
C3': (4.099,56.404,22.367)
C1': (5.614,58.182,22.235)
C5': (5.834,54.665,21.676)
O4': (6.353,56.974,22.195)
C8: (5.611,57.997,19.683)
O2': (4.320,57.914,24.236)
C6: (4.796,61.207,18.465)
C5: (5.104,59.988,19.103)
C4: (5.146,59.984,20.487)
P: (6.080,54.078,19.107)
C4': (5.504,55.853,22.552)
C2': (4.241,57.850,22.818)
C2: (4.624,62.123,20.579)
N1: (4.554,62.271,19.252)
N3: (4.910,61.037,21.289)
N6: (4.726,61.354,17.133)
N7: (5.395,58.729,18.608)
N9: (5.473,58.694,20.858)
O5': (5.577,54.982,20.313)
O3': (3.152,55.675,23.111)
OP2: (5.820,54.772,17.841)
C3': (4.099,56.404,22.367)
C1': (5.614,58.182,22.235)
C5': (5.834,54.665,21.676)
O4': (6.353,56.974,22.195)
C8: (5.611,57.997,19.683)
O2': (4.320,57.914,24.236)
C6: (4.796,61.207,18.465)
C5: (5.104,59.988,19.103)
C4: (5.146,59.984,20.487)
P: (6.080,54.078,19.107)
C4': (5.504,55.853,22.552)
C2': (4.241,57.850,22.818)
C2: (4.624,62.123,20.579)
N1: (4.554,62.271,19.252)
N3: (4.910,61.037,21.289)
N6: (4.726,61.354,17.133)
N7: (5.395,58.729,18.608)
N9: (5.473,58.694,20.858)
O5': (5.577,54.982,20.313)
O3': (3.152,55.675,23.111)
Image (generated by PyMOL):