Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:X34:X110
Extra
PDB:
ATOM 1 O3' A A 33 1.556 -12.107 13.506 1.00 78.09 O
ATOM 2 P C A 34 1.958 -10.555 13.334 1.00 84.38 P
ATOM 3 OP1 C A 34 1.636 -10.128 11.946 1.00 83.31 O
ATOM 4 OP2 C A 34 3.372 -10.475 13.788 1.00 75.51 O
ATOM 5 O5' C A 34 0.977 -9.838 14.371 1.00 72.67 O
ATOM 6 C5' C A 34 0.904 -10.283 15.719 1.00 59.81 C
ATOM 7 C4' C A 34 0.084 -9.355 16.577 1.00 51.03 C
ATOM 8 O4' C A 34 -1.198 -9.972 16.879 1.00 44.43 O
ATOM 9 C3' C A 34 0.696 -9.034 17.933 1.00 37.98 C
ATOM 10 O3' C A 34 1.664 -7.995 17.864 1.00 41.92 O
ATOM 11 C2' C A 34 -0.525 -8.716 18.791 1.00 37.68 C
ATOM 12 O2' C A 34 -0.946 -7.365 18.629 1.00 40.32 O
ATOM 13 C1' C A 34 -1.587 -9.660 18.201 1.00 40.03 C
ATOM 14 N1 C A 34 -1.747 -10.918 18.982 1.00 34.98 N
ATOM 15 C2 C A 34 -2.253 -10.827 20.283 1.00 33.57 C
ATOM 16 O2 C A 34 -2.555 -9.720 20.734 1.00 33.72 O
ATOM 17 N3 C A 34 -2.403 -11.942 21.034 1.00 33.59 N
ATOM 18 C4 C A 34 -2.067 -13.132 20.541 1.00 32.39 C
ATOM 19 N4 C A 34 -2.244 -14.185 21.353 1.00 29.98 N
ATOM 20 C5 C A 34 -1.546 -13.269 19.217 1.00 32.08 C
ATOM 21 C6 C A 34 -1.402 -12.149 18.483 1.00 34.77 C
ATOM 22 P G A 35 3.074 -8.114 18.643 1.00 43.52 P
ATOM 23 OP1 G A 35 3.717 -6.779 18.608 1.00 41.85 O
ATOM 24 OP2 G A 35 3.806 -9.287 18.103 1.00 38.66 O
ATOM 25 O5' G A 35 2.588 -8.405 20.132 1.00 33.24 O
TER
ATOM 1 O3' C B 109 -2.543 -21.837 27.553 1.00 29.93 O
ATOM 2 P U B 110 -3.788 -22.173 26.607 1.00 31.70 P
ATOM 3 OP1 U B 110 -4.942 -22.363 27.521 1.00 29.74 O
ATOM 4 OP2 U B 110 -3.398 -23.263 25.688 1.00 25.88 O
ATOM 5 O5' U B 110 -3.953 -20.870 25.696 1.00 27.12 O
ATOM 6 C5' U B 110 -4.315 -19.611 26.211 1.00 31.24 C
ATOM 7 C4' U B 110 -4.110 -18.505 25.200 1.00 29.45 C
ATOM 8 O4' U B 110 -2.788 -18.580 24.589 1.00 29.73 O
ATOM 9 C3' U B 110 -5.024 -18.430 23.985 1.00 26.92 C
ATOM 10 O3' U B 110 -6.344 -18.004 24.280 1.00 26.40 O
ATOM 11 C2' U B 110 -4.259 -17.389 23.181 1.00 28.33 C
ATOM 12 O2' U B 110 -4.371 -16.136 23.841 1.00 25.57 O
ATOM 13 C1' U B 110 -2.820 -17.868 23.369 1.00 26.13 C
ATOM 14 N1 U B 110 -2.359 -18.686 22.235 1.00 27.18 N
ATOM 15 C2 U B 110 -1.946 -18.010 21.102 1.00 29.78 C
ATOM 16 O2 U B 110 -1.948 -16.800 21.029 1.00 28.01 O
ATOM 17 N3 U B 110 -1.524 -18.803 20.060 1.00 34.49 N
ATOM 18 C4 U B 110 -1.476 -20.181 20.043 1.00 38.48 C
ATOM 19 O4 U B 110 -1.074 -20.761 19.032 1.00 44.26 O
ATOM 20 C5 U B 110 -1.924 -20.807 21.249 1.00 33.55 C
ATOM 21 C6 U B 110 -2.341 -20.060 22.277 1.00 29.43 C
ATOM 22 P G B 111 -7.626 -18.709 23.614 1.00 24.98 P
ATOM 23 OP1 G B 111 -7.548 -20.115 24.017 1.00 23.94 O
ATOM 24 OP2 G B 111 -7.686 -18.371 22.169 1.00 26.16 O
ATOM 25 O5' G B 111 -8.774 -17.945 24.418 1.00 23.94 O
TER
ATOM 2 P C A 34 1.958 -10.555 13.334 1.00 84.38 P
ATOM 3 OP1 C A 34 1.636 -10.128 11.946 1.00 83.31 O
ATOM 4 OP2 C A 34 3.372 -10.475 13.788 1.00 75.51 O
ATOM 5 O5' C A 34 0.977 -9.838 14.371 1.00 72.67 O
ATOM 6 C5' C A 34 0.904 -10.283 15.719 1.00 59.81 C
ATOM 7 C4' C A 34 0.084 -9.355 16.577 1.00 51.03 C
ATOM 8 O4' C A 34 -1.198 -9.972 16.879 1.00 44.43 O
ATOM 9 C3' C A 34 0.696 -9.034 17.933 1.00 37.98 C
ATOM 10 O3' C A 34 1.664 -7.995 17.864 1.00 41.92 O
ATOM 11 C2' C A 34 -0.525 -8.716 18.791 1.00 37.68 C
ATOM 12 O2' C A 34 -0.946 -7.365 18.629 1.00 40.32 O
ATOM 13 C1' C A 34 -1.587 -9.660 18.201 1.00 40.03 C
ATOM 14 N1 C A 34 -1.747 -10.918 18.982 1.00 34.98 N
ATOM 15 C2 C A 34 -2.253 -10.827 20.283 1.00 33.57 C
ATOM 16 O2 C A 34 -2.555 -9.720 20.734 1.00 33.72 O
ATOM 17 N3 C A 34 -2.403 -11.942 21.034 1.00 33.59 N
ATOM 18 C4 C A 34 -2.067 -13.132 20.541 1.00 32.39 C
ATOM 19 N4 C A 34 -2.244 -14.185 21.353 1.00 29.98 N
ATOM 20 C5 C A 34 -1.546 -13.269 19.217 1.00 32.08 C
ATOM 21 C6 C A 34 -1.402 -12.149 18.483 1.00 34.77 C
ATOM 22 P G A 35 3.074 -8.114 18.643 1.00 43.52 P
ATOM 23 OP1 G A 35 3.717 -6.779 18.608 1.00 41.85 O
ATOM 24 OP2 G A 35 3.806 -9.287 18.103 1.00 38.66 O
ATOM 25 O5' G A 35 2.588 -8.405 20.132 1.00 33.24 O
TER
ATOM 1 O3' C B 109 -2.543 -21.837 27.553 1.00 29.93 O
ATOM 2 P U B 110 -3.788 -22.173 26.607 1.00 31.70 P
ATOM 3 OP1 U B 110 -4.942 -22.363 27.521 1.00 29.74 O
ATOM 4 OP2 U B 110 -3.398 -23.263 25.688 1.00 25.88 O
ATOM 5 O5' U B 110 -3.953 -20.870 25.696 1.00 27.12 O
ATOM 6 C5' U B 110 -4.315 -19.611 26.211 1.00 31.24 C
ATOM 7 C4' U B 110 -4.110 -18.505 25.200 1.00 29.45 C
ATOM 8 O4' U B 110 -2.788 -18.580 24.589 1.00 29.73 O
ATOM 9 C3' U B 110 -5.024 -18.430 23.985 1.00 26.92 C
ATOM 10 O3' U B 110 -6.344 -18.004 24.280 1.00 26.40 O
ATOM 11 C2' U B 110 -4.259 -17.389 23.181 1.00 28.33 C
ATOM 12 O2' U B 110 -4.371 -16.136 23.841 1.00 25.57 O
ATOM 13 C1' U B 110 -2.820 -17.868 23.369 1.00 26.13 C
ATOM 14 N1 U B 110 -2.359 -18.686 22.235 1.00 27.18 N
ATOM 15 C2 U B 110 -1.946 -18.010 21.102 1.00 29.78 C
ATOM 16 O2 U B 110 -1.948 -16.800 21.029 1.00 28.01 O
ATOM 17 N3 U B 110 -1.524 -18.803 20.060 1.00 34.49 N
ATOM 18 C4 U B 110 -1.476 -20.181 20.043 1.00 38.48 C
ATOM 19 O4 U B 110 -1.074 -20.761 19.032 1.00 44.26 O
ATOM 20 C5 U B 110 -1.924 -20.807 21.249 1.00 33.55 C
ATOM 21 C6 U B 110 -2.341 -20.060 22.277 1.00 29.43 C
ATOM 22 P G B 111 -7.626 -18.709 23.614 1.00 24.98 P
ATOM 23 OP1 G B 111 -7.548 -20.115 24.017 1.00 23.94 O
ATOM 24 OP2 G B 111 -7.686 -18.371 22.169 1.00 26.16 O
ATOM 25 O5' G B 111 -8.774 -17.945 24.418 1.00 23.94 O
TER
Atoms:
C2: (-2.253,-10.827,20.283)
OP1: (1.636,-10.128,11.946)
OP2: (3.372,-10.475,13.788)
C4: (-2.067,-13.132,20.541)
O5': (0.977,-9.838,14.371)
C3': (0.696,-9.034,17.933)
C1': (-1.587,-9.660,18.201)
O4': (-1.198,-9.972,16.879)
C5': (0.904,-10.283,15.719)
P: (1.958,-10.555,13.334)
O2: (-2.555,-9.720,20.734)
C4': (0.084,-9.355,16.577)
C2': (-0.525,-8.716,18.791)
O2': (-0.946,-7.365,18.629)
N1: (-1.747,-10.918,18.982)
N3: (-2.403,-11.942,21.034)
N4: (-2.244,-14.185,21.353)
C6: (-1.402,-12.149,18.483)
C5: (-1.546,-13.269,19.217)
O3': (1.664,-7.995,17.864)
OP1: (1.636,-10.128,11.946)
OP2: (3.372,-10.475,13.788)
C4: (-2.067,-13.132,20.541)
O5': (0.977,-9.838,14.371)
C3': (0.696,-9.034,17.933)
C1': (-1.587,-9.660,18.201)
O4': (-1.198,-9.972,16.879)
C5': (0.904,-10.283,15.719)
P: (1.958,-10.555,13.334)
O2: (-2.555,-9.720,20.734)
C4': (0.084,-9.355,16.577)
C2': (-0.525,-8.716,18.791)
O2': (-0.946,-7.365,18.629)
N1: (-1.747,-10.918,18.982)
N3: (-2.403,-11.942,21.034)
N4: (-2.244,-14.185,21.353)
C6: (-1.402,-12.149,18.483)
C5: (-1.546,-13.269,19.217)
O3': (1.664,-7.995,17.864)
C4: (-1.476,-20.181,20.043)
N3: (-1.524,-18.803,20.060)
OP1: (-4.942,-22.363,27.521)
OP2: (-3.398,-23.263,25.688)
C2: (-1.946,-18.010,21.102)
C1': (-2.820,-17.868,23.369)
C3': (-5.024,-18.430,23.985)
O5': (-3.953,-20.870,25.696)
O4': (-2.788,-18.580,24.589)
C5': (-4.315,-19.611,26.211)
P: (-3.788,-22.173,26.607)
C4': (-4.110,-18.505,25.200)
C2': (-4.259,-17.389,23.181)
O2': (-4.371,-16.136,23.841)
N1: (-2.359,-18.686,22.235)
O4: (-1.074,-20.761,19.032)
O2: (-1.948,-16.800,21.029)
C6: (-2.341,-20.060,22.277)
C5: (-1.924,-20.807,21.249)
O3': (-6.344,-18.004,24.280)
N3: (-1.524,-18.803,20.060)
OP1: (-4.942,-22.363,27.521)
OP2: (-3.398,-23.263,25.688)
C2: (-1.946,-18.010,21.102)
C1': (-2.820,-17.868,23.369)
C3': (-5.024,-18.430,23.985)
O5': (-3.953,-20.870,25.696)
O4': (-2.788,-18.580,24.589)
C5': (-4.315,-19.611,26.211)
P: (-3.788,-22.173,26.607)
C4': (-4.110,-18.505,25.200)
C2': (-4.259,-17.389,23.181)
O2': (-4.371,-16.136,23.841)
N1: (-2.359,-18.686,22.235)
O4: (-1.074,-20.761,19.032)
O2: (-1.948,-16.800,21.029)
C6: (-2.341,-20.060,22.277)
C5: (-1.924,-20.807,21.249)
O3': (-6.344,-18.004,24.280)
Image (generated by PyMOL):