Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RG5:B55:B52
Extra
PDB:
ATOM 1 O3' G A 54 -6.296 7.460 7.210 1.00 52.52 O
ATOM 2 P C A 55 -5.126 7.429 6.106 1.00 54.04 P
ATOM 3 OP1 C A 55 -4.002 6.717 6.756 1.00 55.54 O
ATOM 4 OP2 C A 55 -4.921 8.796 5.552 1.00 52.54 O
ATOM 5 O5' C A 55 -5.688 6.474 4.944 1.00 51.78 O
ATOM 6 C5' C A 55 -5.928 5.095 5.217 1.00 48.23 C
ATOM 7 C4' C A 55 -6.804 4.485 4.148 1.00 46.86 C
ATOM 8 O4' C A 55 -8.128 5.077 4.143 1.00 46.66 O
ATOM 9 C3' C A 55 -6.309 4.728 2.742 1.00 46.10 C
ATOM 10 O3' C A 55 -5.244 3.839 2.433 1.00 44.74 O
ATOM 11 C2' C A 55 -7.567 4.479 1.923 1.00 46.39 C
ATOM 12 O2' C A 55 -7.873 3.106 1.745 1.00 48.19 O
ATOM 13 C1' C A 55 -8.598 5.160 2.804 1.00 46.00 C
ATOM 14 N1 C A 55 -8.870 6.612 2.472 1.00 45.68 N
ATOM 15 C2 C A 55 -9.837 6.961 1.511 1.00 44.08 C
ATOM 16 O2 C A 55 -10.450 6.066 0.928 1.00 43.03 O
ATOM 17 N3 C A 55 -10.071 8.282 1.252 1.00 42.18 N
ATOM 18 C4 C A 55 -9.377 9.215 1.912 1.00 43.53 C
ATOM 19 N4 C A 55 -9.620 10.501 1.654 1.00 44.13 N
ATOM 20 C5 C A 55 -8.387 8.885 2.891 1.00 43.81 C
ATOM 21 C6 C A 55 -8.174 7.594 3.124 1.00 44.87 C
ATOM 22 P G A 56 -4.237 4.172 1.249 1.00 44.96 P
ATOM 23 OP1 G A 56 -3.269 3.059 1.170 1.00 45.57 O
ATOM 24 OP2 G A 56 -3.757 5.560 1.423 1.00 43.49 O
ATOM 25 O5' G A 56 -5.131 4.021 -0.074 1.00 41.36 O
TER
ATOM 1 O3' U B 51 -8.415 19.969 2.521 1.00 43.70 O
ATOM 2 P U B 52 -8.991 19.510 3.937 1.00 47.40 P
ATOM 3 OP1 U B 52 -10.253 20.275 4.026 1.00 48.12 O
ATOM 4 OP2 U B 52 -7.952 19.539 4.985 1.00 45.14 O
ATOM 5 O5' U B 52 -9.303 17.933 3.808 1.00 48.28 O
ATOM 6 C5' U B 52 -10.429 17.442 3.082 1.00 48.49 C
ATOM 7 C4' U B 52 -10.434 15.916 3.165 1.00 49.57 C
ATOM 8 O4' U B 52 -9.161 15.396 2.710 1.00 49.00 O
ATOM 9 C3' U B 52 -10.532 15.331 4.564 1.00 49.28 C
ATOM 10 O3' U B 52 -11.865 15.396 5.055 1.00 49.58 O
ATOM 11 C2' U B 52 -10.018 13.908 4.361 1.00 48.75 C
ATOM 12 O2' U B 52 -10.943 13.026 3.771 1.00 49.33 O
ATOM 13 C1' U B 52 -8.923 14.143 3.329 1.00 49.68 C
ATOM 14 N1 U B 52 -7.561 14.116 3.926 1.00 49.50 N
ATOM 15 C2 U B 52 -6.947 12.895 4.085 1.00 50.02 C
ATOM 16 O2 U B 52 -7.467 11.848 3.756 1.00 50.98 O
ATOM 17 N3 U B 52 -5.695 12.938 4.636 1.00 50.44 N
ATOM 18 C4 U B 52 -5.030 14.074 5.039 1.00 51.58 C
ATOM 19 O4 U B 52 -3.912 13.973 5.524 1.00 54.01 O
ATOM 20 C5 U B 52 -5.736 15.316 4.848 1.00 51.35 C
ATOM 21 C6 U B 52 -6.954 15.291 4.303 1.00 49.88 C
ATOM 22 P A B 53 -12.111 15.760 6.599 1.00 50.17 P
ATOM 23 OP1 A B 53 -13.548 15.496 6.830 1.00 49.91 O
ATOM 24 OP2 A B 53 -11.545 17.092 6.880 1.00 49.87 O
ATOM 25 O5' A B 53 -11.261 14.702 7.437 1.00 47.35 O
TER
ATOM 2 P C A 55 -5.126 7.429 6.106 1.00 54.04 P
ATOM 3 OP1 C A 55 -4.002 6.717 6.756 1.00 55.54 O
ATOM 4 OP2 C A 55 -4.921 8.796 5.552 1.00 52.54 O
ATOM 5 O5' C A 55 -5.688 6.474 4.944 1.00 51.78 O
ATOM 6 C5' C A 55 -5.928 5.095 5.217 1.00 48.23 C
ATOM 7 C4' C A 55 -6.804 4.485 4.148 1.00 46.86 C
ATOM 8 O4' C A 55 -8.128 5.077 4.143 1.00 46.66 O
ATOM 9 C3' C A 55 -6.309 4.728 2.742 1.00 46.10 C
ATOM 10 O3' C A 55 -5.244 3.839 2.433 1.00 44.74 O
ATOM 11 C2' C A 55 -7.567 4.479 1.923 1.00 46.39 C
ATOM 12 O2' C A 55 -7.873 3.106 1.745 1.00 48.19 O
ATOM 13 C1' C A 55 -8.598 5.160 2.804 1.00 46.00 C
ATOM 14 N1 C A 55 -8.870 6.612 2.472 1.00 45.68 N
ATOM 15 C2 C A 55 -9.837 6.961 1.511 1.00 44.08 C
ATOM 16 O2 C A 55 -10.450 6.066 0.928 1.00 43.03 O
ATOM 17 N3 C A 55 -10.071 8.282 1.252 1.00 42.18 N
ATOM 18 C4 C A 55 -9.377 9.215 1.912 1.00 43.53 C
ATOM 19 N4 C A 55 -9.620 10.501 1.654 1.00 44.13 N
ATOM 20 C5 C A 55 -8.387 8.885 2.891 1.00 43.81 C
ATOM 21 C6 C A 55 -8.174 7.594 3.124 1.00 44.87 C
ATOM 22 P G A 56 -4.237 4.172 1.249 1.00 44.96 P
ATOM 23 OP1 G A 56 -3.269 3.059 1.170 1.00 45.57 O
ATOM 24 OP2 G A 56 -3.757 5.560 1.423 1.00 43.49 O
ATOM 25 O5' G A 56 -5.131 4.021 -0.074 1.00 41.36 O
TER
ATOM 1 O3' U B 51 -8.415 19.969 2.521 1.00 43.70 O
ATOM 2 P U B 52 -8.991 19.510 3.937 1.00 47.40 P
ATOM 3 OP1 U B 52 -10.253 20.275 4.026 1.00 48.12 O
ATOM 4 OP2 U B 52 -7.952 19.539 4.985 1.00 45.14 O
ATOM 5 O5' U B 52 -9.303 17.933 3.808 1.00 48.28 O
ATOM 6 C5' U B 52 -10.429 17.442 3.082 1.00 48.49 C
ATOM 7 C4' U B 52 -10.434 15.916 3.165 1.00 49.57 C
ATOM 8 O4' U B 52 -9.161 15.396 2.710 1.00 49.00 O
ATOM 9 C3' U B 52 -10.532 15.331 4.564 1.00 49.28 C
ATOM 10 O3' U B 52 -11.865 15.396 5.055 1.00 49.58 O
ATOM 11 C2' U B 52 -10.018 13.908 4.361 1.00 48.75 C
ATOM 12 O2' U B 52 -10.943 13.026 3.771 1.00 49.33 O
ATOM 13 C1' U B 52 -8.923 14.143 3.329 1.00 49.68 C
ATOM 14 N1 U B 52 -7.561 14.116 3.926 1.00 49.50 N
ATOM 15 C2 U B 52 -6.947 12.895 4.085 1.00 50.02 C
ATOM 16 O2 U B 52 -7.467 11.848 3.756 1.00 50.98 O
ATOM 17 N3 U B 52 -5.695 12.938 4.636 1.00 50.44 N
ATOM 18 C4 U B 52 -5.030 14.074 5.039 1.00 51.58 C
ATOM 19 O4 U B 52 -3.912 13.973 5.524 1.00 54.01 O
ATOM 20 C5 U B 52 -5.736 15.316 4.848 1.00 51.35 C
ATOM 21 C6 U B 52 -6.954 15.291 4.303 1.00 49.88 C
ATOM 22 P A B 53 -12.111 15.760 6.599 1.00 50.17 P
ATOM 23 OP1 A B 53 -13.548 15.496 6.830 1.00 49.91 O
ATOM 24 OP2 A B 53 -11.545 17.092 6.880 1.00 49.87 O
ATOM 25 O5' A B 53 -11.261 14.702 7.437 1.00 47.35 O
TER
Atoms:
C2: (-9.837,6.961,1.511)
OP1: (-4.002,6.717,6.756)
OP2: (-4.921,8.796,5.552)
C4: (-9.377,9.215,1.912)
O5': (-5.688,6.474,4.944)
C3': (-6.309,4.728,2.742)
C1': (-8.598,5.160,2.804)
O4': (-8.128,5.077,4.143)
C5': (-5.928,5.095,5.217)
P: (-5.126,7.429,6.106)
O2: (-10.450,6.066,0.928)
C4': (-6.804,4.485,4.148)
C2': (-7.567,4.479,1.923)
O2': (-7.873,3.106,1.745)
N1: (-8.870,6.612,2.472)
N3: (-10.071,8.282,1.252)
N4: (-9.620,10.501,1.654)
C6: (-8.174,7.594,3.124)
C5: (-8.387,8.885,2.891)
O3': (-5.244,3.839,2.433)
OP1: (-4.002,6.717,6.756)
OP2: (-4.921,8.796,5.552)
C4: (-9.377,9.215,1.912)
O5': (-5.688,6.474,4.944)
C3': (-6.309,4.728,2.742)
C1': (-8.598,5.160,2.804)
O4': (-8.128,5.077,4.143)
C5': (-5.928,5.095,5.217)
P: (-5.126,7.429,6.106)
O2: (-10.450,6.066,0.928)
C4': (-6.804,4.485,4.148)
C2': (-7.567,4.479,1.923)
O2': (-7.873,3.106,1.745)
N1: (-8.870,6.612,2.472)
N3: (-10.071,8.282,1.252)
N4: (-9.620,10.501,1.654)
C6: (-8.174,7.594,3.124)
C5: (-8.387,8.885,2.891)
O3': (-5.244,3.839,2.433)
C4: (-5.030,14.074,5.039)
N3: (-5.695,12.938,4.636)
OP1: (-10.253,20.275,4.026)
OP2: (-7.952,19.539,4.985)
C2: (-6.947,12.895,4.085)
C1': (-8.923,14.143,3.329)
C3': (-10.532,15.331,4.564)
O5': (-9.303,17.933,3.808)
O4': (-9.161,15.396,2.710)
C5': (-10.429,17.442,3.082)
P: (-8.991,19.510,3.937)
C4': (-10.434,15.916,3.165)
C2': (-10.018,13.908,4.361)
O2': (-10.943,13.026,3.771)
N1: (-7.561,14.116,3.926)
O4: (-3.912,13.973,5.524)
O2: (-7.467,11.848,3.756)
C6: (-6.954,15.291,4.303)
C5: (-5.736,15.316,4.848)
O3': (-11.865,15.396,5.055)
N3: (-5.695,12.938,4.636)
OP1: (-10.253,20.275,4.026)
OP2: (-7.952,19.539,4.985)
C2: (-6.947,12.895,4.085)
C1': (-8.923,14.143,3.329)
C3': (-10.532,15.331,4.564)
O5': (-9.303,17.933,3.808)
O4': (-9.161,15.396,2.710)
C5': (-10.429,17.442,3.082)
P: (-8.991,19.510,3.937)
C4': (-10.434,15.916,3.165)
C2': (-10.018,13.908,4.361)
O2': (-10.943,13.026,3.771)
N1: (-7.561,14.116,3.926)
O4: (-3.912,13.973,5.524)
O2: (-7.467,11.848,3.756)
C6: (-6.954,15.291,4.303)
C5: (-5.736,15.316,4.848)
O3': (-11.865,15.396,5.055)
Image (generated by PyMOL):