Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A43:A10
Extra
PDB:
ATOM 1 O3' G A 42 21.879 6.023 17.242 1.00100.22 O
ATOM 2 P C A 43 22.551 5.570 15.868 1.00101.70 P
ATOM 3 OP1 C A 43 24.027 5.458 15.917 1.00100.00 O
ATOM 4 OP2 C A 43 21.935 6.441 14.849 1.00103.20 O
ATOM 5 O5' C A 43 22.000 4.089 15.728 1.00100.75 O
ATOM 6 C5' C A 43 22.616 3.071 16.495 1.00 99.91 C
ATOM 7 C4' C A 43 21.840 1.782 16.366 1.00 98.83 C
ATOM 8 O4' C A 43 20.407 1.989 16.446 1.00 98.87 O
ATOM 9 C3' C A 43 22.042 1.141 15.024 1.00 97.61 C
ATOM 10 O3' C A 43 23.248 0.450 15.067 1.00 97.13 O
ATOM 11 C2' C A 43 20.800 0.260 14.925 1.00 98.23 C
ATOM 12 O2' C A 43 20.835 -0.922 15.697 1.00 98.05 O
ATOM 13 C1' C A 43 19.728 1.128 15.549 1.00 98.16 C
ATOM 14 N1 C A 43 18.833 1.938 14.651 1.00 98.52 N
ATOM 15 C2 C A 43 18.033 1.384 13.627 1.00 97.75 C
ATOM 16 O2 C A 43 18.072 0.177 13.373 1.00 95.63 O
ATOM 17 N3 C A 43 17.217 2.208 12.914 1.00 99.07 N
ATOM 18 C4 C A 43 17.168 3.522 13.185 1.00100.89 C
ATOM 19 N4 C A 43 16.363 4.323 12.467 1.00101.36 N
ATOM 20 C5 C A 43 17.963 4.091 14.219 1.00100.28 C
ATOM 21 C6 C A 43 18.754 3.268 14.908 1.00 99.06 C
ATOM 22 P A A 44 24.017 0.267 13.698 1.00100.49 P
ATOM 23 OP1 A A 44 25.071 -0.772 13.834 1.00 99.47 O
ATOM 24 OP2 A A 44 24.357 1.637 13.248 1.00 99.55 O
ATOM 25 O5' A A 44 22.860 -0.282 12.738 1.00 99.25 O
TER
ATOM 1 O3' A B 9 24.866 -7.550 19.555 1.00100.17 O
ATOM 2 P G B 10 23.979 -6.783 20.650 1.00103.35 P
ATOM 3 OP1 G B 10 24.805 -6.667 21.877 1.00105.76 O
ATOM 4 OP2 G B 10 22.647 -7.437 20.717 1.00101.83 O
ATOM 5 O5' G B 10 23.824 -5.292 20.094 1.00103.64 O
ATOM 6 C5' G B 10 24.809 -4.669 19.270 1.00105.41 C
ATOM 7 C4' G B 10 24.144 -3.580 18.467 1.00106.42 C
ATOM 8 O4' G B 10 23.528 -4.099 17.271 1.00106.36 O
ATOM 9 C3' G B 10 22.993 -2.962 19.223 1.00107.90 C
ATOM 10 O3' G B 10 23.517 -1.992 20.085 1.00110.43 O
ATOM 11 C2' G B 10 22.135 -2.382 18.124 1.00107.38 C
ATOM 12 O2' G B 10 22.624 -1.121 17.727 1.00107.77 O
ATOM 13 C1' G B 10 22.288 -3.451 17.044 1.00106.67 C
ATOM 14 N9 G B 10 21.230 -4.460 17.043 1.00106.98 N
ATOM 15 C8 G B 10 21.231 -5.635 17.748 1.00107.40 C
ATOM 16 N7 G B 10 20.168 -6.370 17.564 1.00108.26 N
ATOM 17 C5 G B 10 19.397 -5.641 16.673 1.00107.72 C
ATOM 18 C6 G B 10 18.134 -5.941 16.104 1.00106.53 C
ATOM 19 O6 G B 10 17.412 -6.927 16.276 1.00105.23 O
ATOM 20 N1 G B 10 17.704 -4.947 15.244 1.00106.87 N
ATOM 21 C2 G B 10 18.406 -3.811 14.955 1.00107.52 C
ATOM 22 N2 G B 10 17.802 -2.986 14.094 1.00108.49 N
ATOM 23 N3 G B 10 19.588 -3.503 15.481 1.00108.15 N
ATOM 24 C4 G B 10 20.037 -4.462 16.334 1.00108.23 C
ATOM 25 P A B 11 23.026 -1.931 21.593 1.00113.46 P
ATOM 26 OP1 A B 11 24.128 -1.310 22.353 1.00114.98 O
ATOM 27 OP2 A B 11 22.452 -3.239 21.991 1.00112.45 O
ATOM 28 O5' A B 11 21.881 -0.839 21.532 1.00115.52 O
TER
ATOM 2 P C A 43 22.551 5.570 15.868 1.00101.70 P
ATOM 3 OP1 C A 43 24.027 5.458 15.917 1.00100.00 O
ATOM 4 OP2 C A 43 21.935 6.441 14.849 1.00103.20 O
ATOM 5 O5' C A 43 22.000 4.089 15.728 1.00100.75 O
ATOM 6 C5' C A 43 22.616 3.071 16.495 1.00 99.91 C
ATOM 7 C4' C A 43 21.840 1.782 16.366 1.00 98.83 C
ATOM 8 O4' C A 43 20.407 1.989 16.446 1.00 98.87 O
ATOM 9 C3' C A 43 22.042 1.141 15.024 1.00 97.61 C
ATOM 10 O3' C A 43 23.248 0.450 15.067 1.00 97.13 O
ATOM 11 C2' C A 43 20.800 0.260 14.925 1.00 98.23 C
ATOM 12 O2' C A 43 20.835 -0.922 15.697 1.00 98.05 O
ATOM 13 C1' C A 43 19.728 1.128 15.549 1.00 98.16 C
ATOM 14 N1 C A 43 18.833 1.938 14.651 1.00 98.52 N
ATOM 15 C2 C A 43 18.033 1.384 13.627 1.00 97.75 C
ATOM 16 O2 C A 43 18.072 0.177 13.373 1.00 95.63 O
ATOM 17 N3 C A 43 17.217 2.208 12.914 1.00 99.07 N
ATOM 18 C4 C A 43 17.168 3.522 13.185 1.00100.89 C
ATOM 19 N4 C A 43 16.363 4.323 12.467 1.00101.36 N
ATOM 20 C5 C A 43 17.963 4.091 14.219 1.00100.28 C
ATOM 21 C6 C A 43 18.754 3.268 14.908 1.00 99.06 C
ATOM 22 P A A 44 24.017 0.267 13.698 1.00100.49 P
ATOM 23 OP1 A A 44 25.071 -0.772 13.834 1.00 99.47 O
ATOM 24 OP2 A A 44 24.357 1.637 13.248 1.00 99.55 O
ATOM 25 O5' A A 44 22.860 -0.282 12.738 1.00 99.25 O
TER
ATOM 1 O3' A B 9 24.866 -7.550 19.555 1.00100.17 O
ATOM 2 P G B 10 23.979 -6.783 20.650 1.00103.35 P
ATOM 3 OP1 G B 10 24.805 -6.667 21.877 1.00105.76 O
ATOM 4 OP2 G B 10 22.647 -7.437 20.717 1.00101.83 O
ATOM 5 O5' G B 10 23.824 -5.292 20.094 1.00103.64 O
ATOM 6 C5' G B 10 24.809 -4.669 19.270 1.00105.41 C
ATOM 7 C4' G B 10 24.144 -3.580 18.467 1.00106.42 C
ATOM 8 O4' G B 10 23.528 -4.099 17.271 1.00106.36 O
ATOM 9 C3' G B 10 22.993 -2.962 19.223 1.00107.90 C
ATOM 10 O3' G B 10 23.517 -1.992 20.085 1.00110.43 O
ATOM 11 C2' G B 10 22.135 -2.382 18.124 1.00107.38 C
ATOM 12 O2' G B 10 22.624 -1.121 17.727 1.00107.77 O
ATOM 13 C1' G B 10 22.288 -3.451 17.044 1.00106.67 C
ATOM 14 N9 G B 10 21.230 -4.460 17.043 1.00106.98 N
ATOM 15 C8 G B 10 21.231 -5.635 17.748 1.00107.40 C
ATOM 16 N7 G B 10 20.168 -6.370 17.564 1.00108.26 N
ATOM 17 C5 G B 10 19.397 -5.641 16.673 1.00107.72 C
ATOM 18 C6 G B 10 18.134 -5.941 16.104 1.00106.53 C
ATOM 19 O6 G B 10 17.412 -6.927 16.276 1.00105.23 O
ATOM 20 N1 G B 10 17.704 -4.947 15.244 1.00106.87 N
ATOM 21 C2 G B 10 18.406 -3.811 14.955 1.00107.52 C
ATOM 22 N2 G B 10 17.802 -2.986 14.094 1.00108.49 N
ATOM 23 N3 G B 10 19.588 -3.503 15.481 1.00108.15 N
ATOM 24 C4 G B 10 20.037 -4.462 16.334 1.00108.23 C
ATOM 25 P A B 11 23.026 -1.931 21.593 1.00113.46 P
ATOM 26 OP1 A B 11 24.128 -1.310 22.353 1.00114.98 O
ATOM 27 OP2 A B 11 22.452 -3.239 21.991 1.00112.45 O
ATOM 28 O5' A B 11 21.881 -0.839 21.532 1.00115.52 O
TER
Atoms:
C2: (18.033,1.384,13.627)
OP1: (24.027,5.458,15.917)
OP2: (21.935,6.441,14.849)
C4: (17.168,3.522,13.185)
O5': (22.000,4.089,15.728)
C3': (22.042,1.141,15.024)
C1': (19.728,1.128,15.549)
O4': (20.407,1.989,16.446)
C5': (22.616,3.071,16.495)
P: (22.551,5.570,15.868)
O2: (18.072,0.177,13.373)
C4': (21.840,1.782,16.366)
C2': (20.800,0.260,14.925)
O2': (20.835,-0.922,15.697)
N1: (18.833,1.938,14.651)
N3: (17.217,2.208,12.914)
N4: (16.363,4.323,12.467)
C6: (18.754,3.268,14.908)
C5: (17.963,4.091,14.219)
O3': (23.248,0.450,15.067)
OP1: (24.027,5.458,15.917)
OP2: (21.935,6.441,14.849)
C4: (17.168,3.522,13.185)
O5': (22.000,4.089,15.728)
C3': (22.042,1.141,15.024)
C1': (19.728,1.128,15.549)
O4': (20.407,1.989,16.446)
C5': (22.616,3.071,16.495)
P: (22.551,5.570,15.868)
O2: (18.072,0.177,13.373)
C4': (21.840,1.782,16.366)
C2': (20.800,0.260,14.925)
O2': (20.835,-0.922,15.697)
N1: (18.833,1.938,14.651)
N3: (17.217,2.208,12.914)
N4: (16.363,4.323,12.467)
C6: (18.754,3.268,14.908)
C5: (17.963,4.091,14.219)
O3': (23.248,0.450,15.067)
OP1: (24.805,-6.667,21.877)
OP2: (22.647,-7.437,20.717)
C3': (22.993,-2.962,19.223)
C1': (22.288,-3.451,17.044)
C5': (24.809,-4.669,19.270)
O6: (17.412,-6.927,16.276)
O4': (23.528,-4.099,17.271)
C8: (21.231,-5.635,17.748)
C2: (18.406,-3.811,14.955)
C6: (18.134,-5.941,16.104)
C5: (19.397,-5.641,16.673)
C4: (20.037,-4.462,16.334)
P: (23.979,-6.783,20.650)
C4': (24.144,-3.580,18.467)
C2': (22.135,-2.382,18.124)
O2': (22.624,-1.121,17.727)
N1: (17.704,-4.947,15.244)
N2: (17.802,-2.986,14.094)
N3: (19.588,-3.503,15.481)
N7: (20.168,-6.370,17.564)
N9: (21.230,-4.460,17.043)
O5': (23.824,-5.292,20.094)
O3': (23.517,-1.992,20.085)
OP2: (22.647,-7.437,20.717)
C3': (22.993,-2.962,19.223)
C1': (22.288,-3.451,17.044)
C5': (24.809,-4.669,19.270)
O6: (17.412,-6.927,16.276)
O4': (23.528,-4.099,17.271)
C8: (21.231,-5.635,17.748)
C2: (18.406,-3.811,14.955)
C6: (18.134,-5.941,16.104)
C5: (19.397,-5.641,16.673)
C4: (20.037,-4.462,16.334)
P: (23.979,-6.783,20.650)
C4': (24.144,-3.580,18.467)
C2': (22.135,-2.382,18.124)
O2': (22.624,-1.121,17.727)
N1: (17.704,-4.947,15.244)
N2: (17.802,-2.986,14.094)
N3: (19.588,-3.503,15.481)
N7: (20.168,-6.370,17.564)
N9: (21.230,-4.460,17.043)
O5': (23.824,-5.292,20.094)
O3': (23.517,-1.992,20.085)
Image (generated by PyMOL):