Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:B29:B9
Extra
PDB:
ATOM 1 O3' C A 28 1.737 -36.312 32.029 1.00 68.78 O
ATOM 2 P C A 29 1.775 -35.505 30.650 1.00 68.49 P
ATOM 3 OP1 C A 29 2.673 -36.252 29.743 1.00 68.59 O
ATOM 4 OP2 C A 29 2.027 -34.069 30.922 1.00 68.53 O
ATOM 5 O5' C A 29 0.272 -35.637 30.122 1.00 68.23 O
ATOM 6 C5' C A 29 -0.328 -36.913 29.913 1.00 67.14 C
ATOM 7 C4' C A 29 -1.763 -36.747 29.451 1.00 66.71 C
ATOM 8 O4' C A 29 -2.599 -36.263 30.534 1.00 66.49 O
ATOM 9 C3' C A 29 -1.944 -35.724 28.343 1.00 66.45 C
ATOM 10 O3' C A 29 -1.685 -36.313 27.076 1.00 65.35 O
ATOM 11 C2' C A 29 -3.403 -35.315 28.515 1.00 66.72 C
ATOM 12 O2' C A 29 -4.308 -36.212 27.903 1.00 66.56 O
ATOM 13 C1' C A 29 -3.571 -35.362 30.029 1.00 66.60 C
ATOM 14 N1 C A 29 -3.471 -34.034 30.729 1.00 66.85 N
ATOM 15 C2 C A 29 -4.521 -33.103 30.643 1.00 67.32 C
ATOM 16 O2 C A 29 -5.531 -33.359 29.983 1.00 67.51 O
ATOM 17 N3 C A 29 -4.410 -31.923 31.304 1.00 68.01 N
ATOM 18 C4 C A 29 -3.319 -31.658 32.027 1.00 68.13 C
ATOM 19 N4 C A 29 -3.266 -30.481 32.654 1.00 68.69 N
ATOM 20 C5 C A 29 -2.235 -32.581 32.131 1.00 67.63 C
ATOM 21 C6 C A 29 -2.360 -33.742 31.475 1.00 67.26 C
ATOM 22 P G A 30 -1.206 -35.374 25.873 1.00 65.73 P
ATOM 23 OP1 G A 30 -0.984 -36.232 24.685 1.00 65.76 O
ATOM 24 OP2 G A 30 -0.126 -34.483 26.358 1.00 65.58 O
ATOM 25 O5' G A 30 -2.484 -34.456 25.605 1.00 65.14 O
TER
ATOM 1 O3' A B 8 -8.220 -43.454 24.825 1.00 58.88 O
ATOM 2 P G B 9 -7.919 -43.711 26.374 1.00 59.87 P
ATOM 3 OP1 G B 9 -7.265 -45.035 26.496 1.00 59.93 O
ATOM 4 OP2 G B 9 -9.135 -43.414 27.173 1.00 59.87 O
ATOM 5 O5' G B 9 -6.860 -42.567 26.701 1.00 60.21 O
ATOM 6 C5' G B 9 -5.574 -42.548 26.106 1.00 60.55 C
ATOM 7 C4' G B 9 -4.902 -41.231 26.446 1.00 60.97 C
ATOM 8 O4' G B 9 -5.668 -40.131 25.896 1.00 61.21 O
ATOM 9 C3' G B 9 -4.828 -40.946 27.933 1.00 61.44 C
ATOM 10 O3' G B 9 -3.647 -41.524 28.438 1.00 62.22 O
ATOM 11 C2' G B 9 -4.804 -39.421 27.974 1.00 61.60 C
ATOM 12 O2' G B 9 -3.520 -38.877 27.741 1.00 62.35 O
ATOM 13 C1' G B 9 -5.711 -39.052 26.807 1.00 60.99 C
ATOM 14 N9 G B 9 -7.103 -38.788 27.172 1.00 60.68 N
ATOM 15 C8 G B 9 -8.099 -39.713 27.382 1.00 60.39 C
ATOM 16 N7 G B 9 -9.247 -39.183 27.690 1.00 60.68 N
ATOM 17 C5 G B 9 -9.003 -37.816 27.683 1.00 60.68 C
ATOM 18 C6 G B 9 -9.876 -36.731 27.946 1.00 60.78 C
ATOM 19 O6 G B 9 -11.077 -36.776 28.245 1.00 61.42 O
ATOM 20 N1 G B 9 -9.237 -35.498 27.835 1.00 60.77 N
ATOM 21 C2 G B 9 -7.909 -35.334 27.508 1.00 60.70 C
ATOM 22 N2 G B 9 -7.456 -34.074 27.441 1.00 60.73 N
ATOM 23 N3 G B 9 -7.079 -36.342 27.261 1.00 60.63 N
ATOM 24 C4 G B 9 -7.688 -37.555 27.368 1.00 60.74 C
ATOM 25 P A B 10 -3.675 -42.816 29.384 1.00 63.28 P
ATOM 26 OP1 A B 10 -2.584 -43.698 28.917 1.00 63.42 O
ATOM 27 OP2 A B 10 -5.050 -43.349 29.525 1.00 63.28 O
ATOM 28 O5' A B 10 -3.245 -42.195 30.787 1.00 63.90 O
TER
ATOM 2 P C A 29 1.775 -35.505 30.650 1.00 68.49 P
ATOM 3 OP1 C A 29 2.673 -36.252 29.743 1.00 68.59 O
ATOM 4 OP2 C A 29 2.027 -34.069 30.922 1.00 68.53 O
ATOM 5 O5' C A 29 0.272 -35.637 30.122 1.00 68.23 O
ATOM 6 C5' C A 29 -0.328 -36.913 29.913 1.00 67.14 C
ATOM 7 C4' C A 29 -1.763 -36.747 29.451 1.00 66.71 C
ATOM 8 O4' C A 29 -2.599 -36.263 30.534 1.00 66.49 O
ATOM 9 C3' C A 29 -1.944 -35.724 28.343 1.00 66.45 C
ATOM 10 O3' C A 29 -1.685 -36.313 27.076 1.00 65.35 O
ATOM 11 C2' C A 29 -3.403 -35.315 28.515 1.00 66.72 C
ATOM 12 O2' C A 29 -4.308 -36.212 27.903 1.00 66.56 O
ATOM 13 C1' C A 29 -3.571 -35.362 30.029 1.00 66.60 C
ATOM 14 N1 C A 29 -3.471 -34.034 30.729 1.00 66.85 N
ATOM 15 C2 C A 29 -4.521 -33.103 30.643 1.00 67.32 C
ATOM 16 O2 C A 29 -5.531 -33.359 29.983 1.00 67.51 O
ATOM 17 N3 C A 29 -4.410 -31.923 31.304 1.00 68.01 N
ATOM 18 C4 C A 29 -3.319 -31.658 32.027 1.00 68.13 C
ATOM 19 N4 C A 29 -3.266 -30.481 32.654 1.00 68.69 N
ATOM 20 C5 C A 29 -2.235 -32.581 32.131 1.00 67.63 C
ATOM 21 C6 C A 29 -2.360 -33.742 31.475 1.00 67.26 C
ATOM 22 P G A 30 -1.206 -35.374 25.873 1.00 65.73 P
ATOM 23 OP1 G A 30 -0.984 -36.232 24.685 1.00 65.76 O
ATOM 24 OP2 G A 30 -0.126 -34.483 26.358 1.00 65.58 O
ATOM 25 O5' G A 30 -2.484 -34.456 25.605 1.00 65.14 O
TER
ATOM 1 O3' A B 8 -8.220 -43.454 24.825 1.00 58.88 O
ATOM 2 P G B 9 -7.919 -43.711 26.374 1.00 59.87 P
ATOM 3 OP1 G B 9 -7.265 -45.035 26.496 1.00 59.93 O
ATOM 4 OP2 G B 9 -9.135 -43.414 27.173 1.00 59.87 O
ATOM 5 O5' G B 9 -6.860 -42.567 26.701 1.00 60.21 O
ATOM 6 C5' G B 9 -5.574 -42.548 26.106 1.00 60.55 C
ATOM 7 C4' G B 9 -4.902 -41.231 26.446 1.00 60.97 C
ATOM 8 O4' G B 9 -5.668 -40.131 25.896 1.00 61.21 O
ATOM 9 C3' G B 9 -4.828 -40.946 27.933 1.00 61.44 C
ATOM 10 O3' G B 9 -3.647 -41.524 28.438 1.00 62.22 O
ATOM 11 C2' G B 9 -4.804 -39.421 27.974 1.00 61.60 C
ATOM 12 O2' G B 9 -3.520 -38.877 27.741 1.00 62.35 O
ATOM 13 C1' G B 9 -5.711 -39.052 26.807 1.00 60.99 C
ATOM 14 N9 G B 9 -7.103 -38.788 27.172 1.00 60.68 N
ATOM 15 C8 G B 9 -8.099 -39.713 27.382 1.00 60.39 C
ATOM 16 N7 G B 9 -9.247 -39.183 27.690 1.00 60.68 N
ATOM 17 C5 G B 9 -9.003 -37.816 27.683 1.00 60.68 C
ATOM 18 C6 G B 9 -9.876 -36.731 27.946 1.00 60.78 C
ATOM 19 O6 G B 9 -11.077 -36.776 28.245 1.00 61.42 O
ATOM 20 N1 G B 9 -9.237 -35.498 27.835 1.00 60.77 N
ATOM 21 C2 G B 9 -7.909 -35.334 27.508 1.00 60.70 C
ATOM 22 N2 G B 9 -7.456 -34.074 27.441 1.00 60.73 N
ATOM 23 N3 G B 9 -7.079 -36.342 27.261 1.00 60.63 N
ATOM 24 C4 G B 9 -7.688 -37.555 27.368 1.00 60.74 C
ATOM 25 P A B 10 -3.675 -42.816 29.384 1.00 63.28 P
ATOM 26 OP1 A B 10 -2.584 -43.698 28.917 1.00 63.42 O
ATOM 27 OP2 A B 10 -5.050 -43.349 29.525 1.00 63.28 O
ATOM 28 O5' A B 10 -3.245 -42.195 30.787 1.00 63.90 O
TER
Atoms:
C2: (-4.521,-33.103,30.643)
OP1: (2.673,-36.252,29.743)
OP2: (2.027,-34.069,30.922)
C4: (-3.319,-31.658,32.027)
O5': (0.272,-35.637,30.122)
C3': (-1.944,-35.724,28.343)
C1': (-3.571,-35.362,30.029)
O4': (-2.599,-36.263,30.534)
C5': (-0.328,-36.913,29.913)
P: (1.775,-35.505,30.650)
O2: (-5.531,-33.359,29.983)
C4': (-1.763,-36.747,29.451)
C2': (-3.403,-35.315,28.515)
O2': (-4.308,-36.212,27.903)
N1: (-3.471,-34.034,30.729)
N3: (-4.410,-31.923,31.304)
N4: (-3.266,-30.481,32.654)
C6: (-2.360,-33.742,31.475)
C5: (-2.235,-32.581,32.131)
O3': (-1.685,-36.313,27.076)
OP1: (2.673,-36.252,29.743)
OP2: (2.027,-34.069,30.922)
C4: (-3.319,-31.658,32.027)
O5': (0.272,-35.637,30.122)
C3': (-1.944,-35.724,28.343)
C1': (-3.571,-35.362,30.029)
O4': (-2.599,-36.263,30.534)
C5': (-0.328,-36.913,29.913)
P: (1.775,-35.505,30.650)
O2: (-5.531,-33.359,29.983)
C4': (-1.763,-36.747,29.451)
C2': (-3.403,-35.315,28.515)
O2': (-4.308,-36.212,27.903)
N1: (-3.471,-34.034,30.729)
N3: (-4.410,-31.923,31.304)
N4: (-3.266,-30.481,32.654)
C6: (-2.360,-33.742,31.475)
C5: (-2.235,-32.581,32.131)
O3': (-1.685,-36.313,27.076)
OP1: (-7.265,-45.035,26.496)
OP2: (-9.135,-43.414,27.173)
C3': (-4.828,-40.946,27.933)
C1': (-5.711,-39.052,26.807)
C5': (-5.574,-42.548,26.106)
O6: (-11.077,-36.776,28.245)
O4': (-5.668,-40.131,25.896)
C8: (-8.099,-39.713,27.382)
C2: (-7.909,-35.334,27.508)
C6: (-9.876,-36.731,27.946)
C5: (-9.003,-37.816,27.683)
C4: (-7.688,-37.555,27.368)
P: (-7.919,-43.711,26.374)
C4': (-4.902,-41.231,26.446)
C2': (-4.804,-39.421,27.974)
O2': (-3.520,-38.877,27.741)
N1: (-9.237,-35.498,27.835)
N2: (-7.456,-34.074,27.441)
N3: (-7.079,-36.342,27.261)
N7: (-9.247,-39.183,27.690)
N9: (-7.103,-38.788,27.172)
O5': (-6.860,-42.567,26.701)
O3': (-3.647,-41.524,28.438)
OP2: (-9.135,-43.414,27.173)
C3': (-4.828,-40.946,27.933)
C1': (-5.711,-39.052,26.807)
C5': (-5.574,-42.548,26.106)
O6: (-11.077,-36.776,28.245)
O4': (-5.668,-40.131,25.896)
C8: (-8.099,-39.713,27.382)
C2: (-7.909,-35.334,27.508)
C6: (-9.876,-36.731,27.946)
C5: (-9.003,-37.816,27.683)
C4: (-7.688,-37.555,27.368)
P: (-7.919,-43.711,26.374)
C4': (-4.902,-41.231,26.446)
C2': (-4.804,-39.421,27.974)
O2': (-3.520,-38.877,27.741)
N1: (-9.237,-35.498,27.835)
N2: (-7.456,-34.074,27.441)
N3: (-7.079,-36.342,27.261)
N7: (-9.247,-39.183,27.690)
N9: (-7.103,-38.788,27.172)
O5': (-6.860,-42.567,26.701)
O3': (-3.647,-41.524,28.438)
Image (generated by PyMOL):