Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8N:V40:A1336
Extra
PDB:
ATOM 1 O3' C A 39 -113.628 16.453 16.662 1.00 19.49 O
ATOM 2 P C A 40 -114.531 15.243 17.210 1.00 20.06 P
ATOM 3 OP1 C A 40 -114.432 15.246 18.711 1.00 20.06 O
ATOM 4 OP2 C A 40 -114.126 14.013 16.459 1.00 20.06 O
ATOM 5 O5' C A 40 -115.989 15.688 16.757 1.00 20.06 O
ATOM 6 C5' C A 40 -116.716 16.691 17.459 1.00 20.06 C
ATOM 7 C4' C A 40 -118.150 16.720 17.001 1.00 20.06 C
ATOM 8 O4' C A 40 -118.181 16.883 15.561 1.00 20.06 O
ATOM 9 C3' C A 40 -118.936 15.440 17.249 1.00 20.06 C
ATOM 10 O3' C A 40 -119.514 15.382 18.535 1.00 20.06 O
ATOM 11 C2' C A 40 -119.956 15.428 16.121 1.00 20.06 C
ATOM 12 O2' C A 40 -121.060 16.272 16.416 1.00 20.06 O
ATOM 13 C1' C A 40 -119.158 16.045 14.993 1.00 20.06 C
ATOM 14 N1 C A 40 -118.482 15.032 14.181 1.00 20.04 N
ATOM 15 C2 C A 40 -119.269 14.393 13.244 1.00 20.04 C
ATOM 16 O2 C A 40 -120.460 14.738 13.229 1.00 20.04 O
ATOM 17 N3 C A 40 -118.728 13.454 12.418 1.00 20.04 N
ATOM 18 C4 C A 40 -117.426 13.176 12.524 1.00 20.04 C
ATOM 19 N4 C A 40 -116.896 12.256 11.707 1.00 20.04 N
ATOM 20 C5 C A 40 -116.602 13.834 13.490 1.00 20.04 C
ATOM 21 C6 C A 40 -117.161 14.749 14.289 1.00 20.04 C
ATOM 22 P C A 41 -119.840 13.955 19.197 1.00 33.17 P
ATOM 23 OP1 C A 41 -120.235 14.225 20.612 1.00 33.17 O
ATOM 24 OP2 C A 41 -118.670 13.065 18.920 1.00 33.17 O
ATOM 25 O5' C A 41 -121.099 13.439 18.365 1.00 33.17 O
TER
ATOM 1 O3' G B1335 -127.078 21.436 19.165 1.00 32.07 O
ATOM 2 P G B1336 -125.797 21.922 20.019 1.00 19.49 P
ATOM 3 OP1 G B1336 -126.091 21.693 21.450 1.00 19.49 O
ATOM 4 OP2 G B1336 -125.462 23.304 19.573 1.00 19.49 O
ATOM 5 O5' G B1336 -124.670 20.911 19.549 1.00 19.49 O
ATOM 6 C5' G B1336 -124.021 20.052 20.482 1.00 19.49 C
ATOM 7 C4' G B1336 -122.830 19.370 19.855 1.00 19.49 C
ATOM 8 O4' G B1336 -123.266 18.172 19.160 1.00 19.49 O
ATOM 9 C3' G B1336 -122.091 20.191 18.809 1.00 19.49 C
ATOM 10 O3' G B1336 -121.064 20.978 19.380 1.00 19.49 O
ATOM 11 C2' G B1336 -121.586 19.145 17.828 1.00 19.49 C
ATOM 12 O2' G B1336 -120.397 18.537 18.316 1.00 19.49 O
ATOM 13 C1' G B1336 -122.707 18.114 17.878 1.00 19.49 C
ATOM 14 N9 G B1336 -123.792 18.385 16.905 1.00 19.43 N
ATOM 15 C8 G B1336 -124.795 19.313 17.083 1.00 19.43 C
ATOM 16 N7 G B1336 -125.689 19.342 16.132 1.00 19.43 N
ATOM 17 C5 G B1336 -125.263 18.355 15.271 1.00 19.43 C
ATOM 18 C6 G B1336 -125.844 17.946 14.050 1.00 19.43 C
ATOM 19 O6 G B1336 -126.855 18.393 13.499 1.00 19.43 O
ATOM 20 N1 G B1336 -125.124 16.909 13.465 1.00 19.43 N
ATOM 21 C2 G B1336 -123.987 16.349 13.996 1.00 19.43 C
ATOM 22 N2 G B1336 -123.463 15.357 13.258 1.00 19.43 N
ATOM 23 N3 G B1336 -123.424 16.725 15.140 1.00 19.43 N
ATOM 24 C4 G B1336 -124.110 17.732 15.727 1.00 19.43 C
ATOM 25 P A B1337 -120.656 22.387 18.728 1.00 27.41 P
ATOM 26 OP1 A B1337 -119.921 23.142 19.776 1.00 27.41 O
ATOM 27 OP2 A B1337 -121.887 22.987 18.143 1.00 27.41 O
ATOM 28 O5' A B1337 -119.653 21.958 17.562 1.00 27.41 O
TER
ATOM 2 P C A 40 -114.531 15.243 17.210 1.00 20.06 P
ATOM 3 OP1 C A 40 -114.432 15.246 18.711 1.00 20.06 O
ATOM 4 OP2 C A 40 -114.126 14.013 16.459 1.00 20.06 O
ATOM 5 O5' C A 40 -115.989 15.688 16.757 1.00 20.06 O
ATOM 6 C5' C A 40 -116.716 16.691 17.459 1.00 20.06 C
ATOM 7 C4' C A 40 -118.150 16.720 17.001 1.00 20.06 C
ATOM 8 O4' C A 40 -118.181 16.883 15.561 1.00 20.06 O
ATOM 9 C3' C A 40 -118.936 15.440 17.249 1.00 20.06 C
ATOM 10 O3' C A 40 -119.514 15.382 18.535 1.00 20.06 O
ATOM 11 C2' C A 40 -119.956 15.428 16.121 1.00 20.06 C
ATOM 12 O2' C A 40 -121.060 16.272 16.416 1.00 20.06 O
ATOM 13 C1' C A 40 -119.158 16.045 14.993 1.00 20.06 C
ATOM 14 N1 C A 40 -118.482 15.032 14.181 1.00 20.04 N
ATOM 15 C2 C A 40 -119.269 14.393 13.244 1.00 20.04 C
ATOM 16 O2 C A 40 -120.460 14.738 13.229 1.00 20.04 O
ATOM 17 N3 C A 40 -118.728 13.454 12.418 1.00 20.04 N
ATOM 18 C4 C A 40 -117.426 13.176 12.524 1.00 20.04 C
ATOM 19 N4 C A 40 -116.896 12.256 11.707 1.00 20.04 N
ATOM 20 C5 C A 40 -116.602 13.834 13.490 1.00 20.04 C
ATOM 21 C6 C A 40 -117.161 14.749 14.289 1.00 20.04 C
ATOM 22 P C A 41 -119.840 13.955 19.197 1.00 33.17 P
ATOM 23 OP1 C A 41 -120.235 14.225 20.612 1.00 33.17 O
ATOM 24 OP2 C A 41 -118.670 13.065 18.920 1.00 33.17 O
ATOM 25 O5' C A 41 -121.099 13.439 18.365 1.00 33.17 O
TER
ATOM 1 O3' G B1335 -127.078 21.436 19.165 1.00 32.07 O
ATOM 2 P G B1336 -125.797 21.922 20.019 1.00 19.49 P
ATOM 3 OP1 G B1336 -126.091 21.693 21.450 1.00 19.49 O
ATOM 4 OP2 G B1336 -125.462 23.304 19.573 1.00 19.49 O
ATOM 5 O5' G B1336 -124.670 20.911 19.549 1.00 19.49 O
ATOM 6 C5' G B1336 -124.021 20.052 20.482 1.00 19.49 C
ATOM 7 C4' G B1336 -122.830 19.370 19.855 1.00 19.49 C
ATOM 8 O4' G B1336 -123.266 18.172 19.160 1.00 19.49 O
ATOM 9 C3' G B1336 -122.091 20.191 18.809 1.00 19.49 C
ATOM 10 O3' G B1336 -121.064 20.978 19.380 1.00 19.49 O
ATOM 11 C2' G B1336 -121.586 19.145 17.828 1.00 19.49 C
ATOM 12 O2' G B1336 -120.397 18.537 18.316 1.00 19.49 O
ATOM 13 C1' G B1336 -122.707 18.114 17.878 1.00 19.49 C
ATOM 14 N9 G B1336 -123.792 18.385 16.905 1.00 19.43 N
ATOM 15 C8 G B1336 -124.795 19.313 17.083 1.00 19.43 C
ATOM 16 N7 G B1336 -125.689 19.342 16.132 1.00 19.43 N
ATOM 17 C5 G B1336 -125.263 18.355 15.271 1.00 19.43 C
ATOM 18 C6 G B1336 -125.844 17.946 14.050 1.00 19.43 C
ATOM 19 O6 G B1336 -126.855 18.393 13.499 1.00 19.43 O
ATOM 20 N1 G B1336 -125.124 16.909 13.465 1.00 19.43 N
ATOM 21 C2 G B1336 -123.987 16.349 13.996 1.00 19.43 C
ATOM 22 N2 G B1336 -123.463 15.357 13.258 1.00 19.43 N
ATOM 23 N3 G B1336 -123.424 16.725 15.140 1.00 19.43 N
ATOM 24 C4 G B1336 -124.110 17.732 15.727 1.00 19.43 C
ATOM 25 P A B1337 -120.656 22.387 18.728 1.00 27.41 P
ATOM 26 OP1 A B1337 -119.921 23.142 19.776 1.00 27.41 O
ATOM 27 OP2 A B1337 -121.887 22.987 18.143 1.00 27.41 O
ATOM 28 O5' A B1337 -119.653 21.958 17.562 1.00 27.41 O
TER
Atoms:
C2: (-119.269,14.393,13.244)
OP1: (-114.432,15.246,18.711)
OP2: (-114.126,14.013,16.459)
C4: (-117.426,13.176,12.524)
O5': (-115.989,15.688,16.757)
C3': (-118.936,15.440,17.249)
C1': (-119.158,16.045,14.993)
O4': (-118.181,16.883,15.561)
C5': (-116.716,16.691,17.459)
P: (-114.531,15.243,17.210)
O2: (-120.460,14.738,13.229)
C4': (-118.150,16.720,17.001)
C2': (-119.956,15.428,16.121)
O2': (-121.060,16.272,16.416)
N1: (-118.482,15.032,14.181)
N3: (-118.728,13.454,12.418)
N4: (-116.896,12.256,11.707)
C6: (-117.161,14.749,14.289)
C5: (-116.602,13.834,13.490)
O3': (-119.514,15.382,18.535)
OP1: (-114.432,15.246,18.711)
OP2: (-114.126,14.013,16.459)
C4: (-117.426,13.176,12.524)
O5': (-115.989,15.688,16.757)
C3': (-118.936,15.440,17.249)
C1': (-119.158,16.045,14.993)
O4': (-118.181,16.883,15.561)
C5': (-116.716,16.691,17.459)
P: (-114.531,15.243,17.210)
O2: (-120.460,14.738,13.229)
C4': (-118.150,16.720,17.001)
C2': (-119.956,15.428,16.121)
O2': (-121.060,16.272,16.416)
N1: (-118.482,15.032,14.181)
N3: (-118.728,13.454,12.418)
N4: (-116.896,12.256,11.707)
C6: (-117.161,14.749,14.289)
C5: (-116.602,13.834,13.490)
O3': (-119.514,15.382,18.535)
OP1: (-126.091,21.693,21.450)
OP2: (-125.462,23.304,19.573)
C3': (-122.091,20.191,18.809)
C1': (-122.707,18.114,17.878)
C5': (-124.021,20.052,20.482)
O6: (-126.855,18.393,13.499)
O4': (-123.266,18.172,19.160)
C8: (-124.795,19.313,17.083)
C2: (-123.987,16.349,13.996)
C6: (-125.844,17.946,14.050)
C5: (-125.263,18.355,15.271)
C4: (-124.110,17.732,15.727)
P: (-125.797,21.922,20.019)
C4': (-122.830,19.370,19.855)
C2': (-121.586,19.145,17.828)
O2': (-120.397,18.537,18.316)
N1: (-125.124,16.909,13.465)
N2: (-123.463,15.357,13.258)
N3: (-123.424,16.725,15.140)
N7: (-125.689,19.342,16.132)
N9: (-123.792,18.385,16.905)
O5': (-124.670,20.911,19.549)
O3': (-121.064,20.978,19.380)
OP2: (-125.462,23.304,19.573)
C3': (-122.091,20.191,18.809)
C1': (-122.707,18.114,17.878)
C5': (-124.021,20.052,20.482)
O6: (-126.855,18.393,13.499)
O4': (-123.266,18.172,19.160)
C8: (-124.795,19.313,17.083)
C2: (-123.987,16.349,13.996)
C6: (-125.844,17.946,14.050)
C5: (-125.263,18.355,15.271)
C4: (-124.110,17.732,15.727)
P: (-125.797,21.922,20.019)
C4': (-122.830,19.370,19.855)
C2': (-121.586,19.145,17.828)
O2': (-120.397,18.537,18.316)
N1: (-125.124,16.909,13.465)
N2: (-123.463,15.357,13.258)
N3: (-123.424,16.725,15.140)
N7: (-125.689,19.342,16.132)
N9: (-123.792,18.385,16.905)
O5': (-124.670,20.911,19.549)
O3': (-121.064,20.978,19.380)
Image (generated by PyMOL):