Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y39:D21:D41
Extra
PDB:
ATOM 1 O3' G A 20 122.645 65.030 5.716 1.00 52.26 O
ATOM 2 P C A 21 122.950 63.467 5.871 1.00 53.45 P
ATOM 3 OP1 C A 21 122.728 63.090 7.298 1.00 54.28 O
ATOM 4 OP2 C A 21 124.256 63.181 5.239 1.00 55.24 O
ATOM 5 O5' C A 21 121.840 62.793 4.959 1.00 53.38 O
ATOM 6 C5' C A 21 120.520 63.300 4.929 1.00 53.52 C
ATOM 7 C4' C A 21 119.930 63.128 3.552 1.00 54.20 C
ATOM 8 O4' C A 21 120.499 64.104 2.650 1.00 53.70 O
ATOM 9 C3' C A 21 120.239 61.809 2.874 1.00 54.43 C
ATOM 10 O3' C A 21 119.416 60.754 3.327 1.00 55.49 O
ATOM 11 C2' C A 21 120.014 62.129 1.406 1.00 54.23 C
ATOM 12 O2' C A 21 118.659 62.052 1.055 1.00 55.19 O
ATOM 13 C1' C A 21 120.482 63.582 1.333 1.00 54.20 C
ATOM 14 N1 C A 21 121.813 63.765 0.737 1.00 54.65 N
ATOM 15 C2 C A 21 121.911 63.876 -0.665 1.00 54.06 C
ATOM 16 O2 C A 21 120.879 63.770 -1.350 1.00 53.60 O
ATOM 17 N3 C A 21 123.120 64.094 -1.227 1.00 53.44 N
ATOM 18 C4 C A 21 124.204 64.194 -0.454 1.00 54.59 C
ATOM 19 N4 C A 21 125.371 64.420 -1.050 1.00 54.55 N
ATOM 20 C5 C A 21 124.137 64.066 0.973 1.00 55.23 C
ATOM 21 C6 C A 21 122.933 63.848 1.520 1.00 54.09 C
ATOM 22 P A A 22 120.100 59.354 3.687 1.00 58.43 P
ATOM 23 OP1 A A 22 120.962 59.536 4.881 1.00 56.87 O
ATOM 24 OP2 A A 22 120.695 58.932 2.410 1.00 59.18 O
ATOM 25 O5' A A 22 118.900 58.367 4.047 1.00 60.02 O
TER
ATOM 1 O3' G B 40 115.271 63.092 -5.882 1.00 84.53 O
ATOM 2 P C B 41 115.923 61.670 -5.506 1.00 86.90 P
ATOM 3 OP1 C B 41 114.943 60.601 -5.855 1.00 86.05 O
ATOM 4 OP2 C B 41 116.443 61.766 -4.109 1.00 86.27 O
ATOM 5 O5' C B 41 117.179 61.568 -6.486 1.00 84.65 O
ATOM 6 C5' C B 41 116.996 61.695 -7.890 1.00 81.20 C
ATOM 7 C4' C B 41 118.322 61.730 -8.607 1.00 77.87 C
ATOM 8 O4' C B 41 119.040 62.959 -8.307 1.00 76.93 O
ATOM 9 C3' C B 41 119.329 60.660 -8.244 1.00 76.01 C
ATOM 10 O3' C B 41 119.008 59.395 -8.809 1.00 72.63 O
ATOM 11 C2' C B 41 120.607 61.252 -8.829 1.00 75.81 C
ATOM 12 O2' C B 41 120.695 61.103 -10.228 1.00 75.69 O
ATOM 13 C1' C B 41 120.429 62.736 -8.498 1.00 75.66 C
ATOM 14 N1 C B 41 121.158 63.086 -7.271 1.00 74.63 N
ATOM 15 C2 C B 41 122.548 63.146 -7.337 1.00 74.34 C
ATOM 16 O2 C B 41 123.099 62.916 -8.426 1.00 74.53 O
ATOM 17 N3 C B 41 123.255 63.443 -6.222 1.00 73.19 N
ATOM 18 C4 C B 41 122.619 63.665 -5.074 1.00 72.33 C
ATOM 19 N4 C B 41 123.355 63.931 -3.998 1.00 71.08 N
ATOM 20 C5 C B 41 121.196 63.619 -4.978 1.00 72.39 C
ATOM 21 C6 C B 41 120.510 63.332 -6.093 1.00 73.71 C
ATOM 22 P G B 42 119.429 58.050 -8.027 1.00 72.04 P
ATOM 23 OP1 G B 42 119.186 56.866 -8.904 1.00 70.78 O
ATOM 24 OP2 G B 42 118.778 58.119 -6.684 1.00 70.69 O
ATOM 25 O5' G B 42 121.010 58.197 -7.836 1.00 68.73 O
TER
ATOM 2 P C A 21 122.950 63.467 5.871 1.00 53.45 P
ATOM 3 OP1 C A 21 122.728 63.090 7.298 1.00 54.28 O
ATOM 4 OP2 C A 21 124.256 63.181 5.239 1.00 55.24 O
ATOM 5 O5' C A 21 121.840 62.793 4.959 1.00 53.38 O
ATOM 6 C5' C A 21 120.520 63.300 4.929 1.00 53.52 C
ATOM 7 C4' C A 21 119.930 63.128 3.552 1.00 54.20 C
ATOM 8 O4' C A 21 120.499 64.104 2.650 1.00 53.70 O
ATOM 9 C3' C A 21 120.239 61.809 2.874 1.00 54.43 C
ATOM 10 O3' C A 21 119.416 60.754 3.327 1.00 55.49 O
ATOM 11 C2' C A 21 120.014 62.129 1.406 1.00 54.23 C
ATOM 12 O2' C A 21 118.659 62.052 1.055 1.00 55.19 O
ATOM 13 C1' C A 21 120.482 63.582 1.333 1.00 54.20 C
ATOM 14 N1 C A 21 121.813 63.765 0.737 1.00 54.65 N
ATOM 15 C2 C A 21 121.911 63.876 -0.665 1.00 54.06 C
ATOM 16 O2 C A 21 120.879 63.770 -1.350 1.00 53.60 O
ATOM 17 N3 C A 21 123.120 64.094 -1.227 1.00 53.44 N
ATOM 18 C4 C A 21 124.204 64.194 -0.454 1.00 54.59 C
ATOM 19 N4 C A 21 125.371 64.420 -1.050 1.00 54.55 N
ATOM 20 C5 C A 21 124.137 64.066 0.973 1.00 55.23 C
ATOM 21 C6 C A 21 122.933 63.848 1.520 1.00 54.09 C
ATOM 22 P A A 22 120.100 59.354 3.687 1.00 58.43 P
ATOM 23 OP1 A A 22 120.962 59.536 4.881 1.00 56.87 O
ATOM 24 OP2 A A 22 120.695 58.932 2.410 1.00 59.18 O
ATOM 25 O5' A A 22 118.900 58.367 4.047 1.00 60.02 O
TER
ATOM 1 O3' G B 40 115.271 63.092 -5.882 1.00 84.53 O
ATOM 2 P C B 41 115.923 61.670 -5.506 1.00 86.90 P
ATOM 3 OP1 C B 41 114.943 60.601 -5.855 1.00 86.05 O
ATOM 4 OP2 C B 41 116.443 61.766 -4.109 1.00 86.27 O
ATOM 5 O5' C B 41 117.179 61.568 -6.486 1.00 84.65 O
ATOM 6 C5' C B 41 116.996 61.695 -7.890 1.00 81.20 C
ATOM 7 C4' C B 41 118.322 61.730 -8.607 1.00 77.87 C
ATOM 8 O4' C B 41 119.040 62.959 -8.307 1.00 76.93 O
ATOM 9 C3' C B 41 119.329 60.660 -8.244 1.00 76.01 C
ATOM 10 O3' C B 41 119.008 59.395 -8.809 1.00 72.63 O
ATOM 11 C2' C B 41 120.607 61.252 -8.829 1.00 75.81 C
ATOM 12 O2' C B 41 120.695 61.103 -10.228 1.00 75.69 O
ATOM 13 C1' C B 41 120.429 62.736 -8.498 1.00 75.66 C
ATOM 14 N1 C B 41 121.158 63.086 -7.271 1.00 74.63 N
ATOM 15 C2 C B 41 122.548 63.146 -7.337 1.00 74.34 C
ATOM 16 O2 C B 41 123.099 62.916 -8.426 1.00 74.53 O
ATOM 17 N3 C B 41 123.255 63.443 -6.222 1.00 73.19 N
ATOM 18 C4 C B 41 122.619 63.665 -5.074 1.00 72.33 C
ATOM 19 N4 C B 41 123.355 63.931 -3.998 1.00 71.08 N
ATOM 20 C5 C B 41 121.196 63.619 -4.978 1.00 72.39 C
ATOM 21 C6 C B 41 120.510 63.332 -6.093 1.00 73.71 C
ATOM 22 P G B 42 119.429 58.050 -8.027 1.00 72.04 P
ATOM 23 OP1 G B 42 119.186 56.866 -8.904 1.00 70.78 O
ATOM 24 OP2 G B 42 118.778 58.119 -6.684 1.00 70.69 O
ATOM 25 O5' G B 42 121.010 58.197 -7.836 1.00 68.73 O
TER
Atoms:
C2: (121.911,63.876,-0.665)
OP1: (122.728,63.090,7.298)
OP2: (124.256,63.181,5.239)
C4: (124.204,64.194,-0.454)
O5': (121.840,62.793,4.959)
C3': (120.239,61.809,2.874)
C1': (120.482,63.582,1.333)
O4': (120.499,64.104,2.650)
C5': (120.520,63.300,4.929)
P: (122.950,63.467,5.871)
O2: (120.879,63.770,-1.350)
C4': (119.930,63.128,3.552)
C2': (120.014,62.129,1.406)
O2': (118.659,62.052,1.055)
N1: (121.813,63.765,0.737)
N3: (123.120,64.094,-1.227)
N4: (125.371,64.420,-1.050)
C6: (122.933,63.848,1.520)
C5: (124.137,64.066,0.973)
O3': (119.416,60.754,3.327)
OP1: (122.728,63.090,7.298)
OP2: (124.256,63.181,5.239)
C4: (124.204,64.194,-0.454)
O5': (121.840,62.793,4.959)
C3': (120.239,61.809,2.874)
C1': (120.482,63.582,1.333)
O4': (120.499,64.104,2.650)
C5': (120.520,63.300,4.929)
P: (122.950,63.467,5.871)
O2: (120.879,63.770,-1.350)
C4': (119.930,63.128,3.552)
C2': (120.014,62.129,1.406)
O2': (118.659,62.052,1.055)
N1: (121.813,63.765,0.737)
N3: (123.120,64.094,-1.227)
N4: (125.371,64.420,-1.050)
C6: (122.933,63.848,1.520)
C5: (124.137,64.066,0.973)
O3': (119.416,60.754,3.327)
C2: (122.548,63.146,-7.337)
OP1: (114.943,60.601,-5.855)
OP2: (116.443,61.766,-4.109)
C4: (122.619,63.665,-5.074)
O5': (117.179,61.568,-6.486)
C3': (119.329,60.660,-8.244)
C1': (120.429,62.736,-8.498)
O4': (119.040,62.959,-8.307)
C5': (116.996,61.695,-7.890)
P: (115.923,61.670,-5.506)
O2: (123.099,62.916,-8.426)
C4': (118.322,61.730,-8.607)
C2': (120.607,61.252,-8.829)
O2': (120.695,61.103,-10.228)
N1: (121.158,63.086,-7.271)
N3: (123.255,63.443,-6.222)
N4: (123.355,63.931,-3.998)
C6: (120.510,63.332,-6.093)
C5: (121.196,63.619,-4.978)
O3': (119.008,59.395,-8.809)
OP1: (114.943,60.601,-5.855)
OP2: (116.443,61.766,-4.109)
C4: (122.619,63.665,-5.074)
O5': (117.179,61.568,-6.486)
C3': (119.329,60.660,-8.244)
C1': (120.429,62.736,-8.498)
O4': (119.040,62.959,-8.307)
C5': (116.996,61.695,-7.890)
P: (115.923,61.670,-5.506)
O2: (123.099,62.916,-8.426)
C4': (118.322,61.730,-8.607)
C2': (120.607,61.252,-8.829)
O2': (120.695,61.103,-10.228)
N1: (121.158,63.086,-7.271)
N3: (123.255,63.443,-6.222)
N4: (123.355,63.931,-3.998)
C6: (120.510,63.332,-6.093)
C5: (121.196,63.619,-4.978)
O3': (119.008,59.395,-8.809)
Image (generated by PyMOL):