Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01898:01901
Extra
PDB:
ATOM 1 O3' U A1897 120.340 112.105 81.022 1.00 41.73 O
ATOM 2 P C A1898 119.988 112.097 82.582 1.00 42.87 P
ATOM 3 OP1 C A1898 120.481 113.367 83.179 1.00 44.35 O
ATOM 4 OP2 C A1898 120.421 110.797 83.154 1.00 42.65 O
ATOM 5 O5' C A1898 118.399 112.135 82.611 1.00 44.86 O
ATOM 6 C5' C A1898 117.668 113.275 82.118 1.00 44.41 C
ATOM 7 C4' C A1898 116.513 113.572 83.040 1.00 44.66 C
ATOM 8 O4' C A1898 115.706 112.376 83.167 1.00 45.84 O
ATOM 9 C3' C A1898 116.917 113.934 84.461 1.00 44.07 C
ATOM 10 O3' C A1898 117.102 115.345 84.527 1.00 45.12 O
ATOM 11 C2' C A1898 115.720 113.472 85.284 1.00 43.24 C
ATOM 12 O2' C A1898 114.673 114.408 85.267 1.00 42.44 O
ATOM 13 C1' C A1898 115.258 112.240 84.500 1.00 45.04 C
ATOM 14 N1 C A1898 115.686 110.917 84.984 1.00 46.13 N
ATOM 15 C2 C A1898 114.750 109.883 84.993 1.00 48.48 C
ATOM 16 O2 C A1898 113.584 110.124 84.643 1.00 50.08 O
ATOM 17 N3 C A1898 115.132 108.646 85.387 1.00 49.06 N
ATOM 18 C4 C A1898 116.389 108.428 85.772 1.00 47.66 C
ATOM 19 N4 C A1898 116.718 107.194 86.141 1.00 48.84 N
ATOM 20 C5 C A1898 117.360 109.468 85.793 1.00 47.67 C
ATOM 21 C6 C A1898 116.970 110.687 85.396 1.00 47.75 C
ATOM 22 P A A1899 117.911 116.004 85.747 1.00 46.10 P
ATOM 23 OP1 A A1899 119.311 116.196 85.281 1.00 49.07 O
ATOM 24 OP2 A A1899 117.649 115.251 87.001 1.00 45.69 O
ATOM 25 O5' A A1899 117.240 117.438 85.895 1.00 44.94 O
TER
ATOM 1 O3' A B1900 110.338 115.859 81.997 1.00 46.06 O
ATOM 2 P C B1901 109.433 115.605 83.318 1.00 43.49 P
ATOM 3 OP1 C B1901 108.553 116.792 83.462 1.00 42.51 O
ATOM 4 OP2 C B1901 110.288 115.193 84.454 1.00 43.63 O
ATOM 5 O5' C B1901 108.519 114.357 82.945 1.00 43.71 O
ATOM 6 C5' C B1901 107.449 114.481 81.990 1.00 45.26 C
ATOM 7 C4' C B1901 106.567 113.258 82.028 1.00 44.88 C
ATOM 8 O4' C B1901 107.266 112.109 81.494 1.00 44.98 O
ATOM 9 C3' C B1901 106.143 112.828 83.416 1.00 45.73 C
ATOM 10 O3' C B1901 105.025 113.588 83.838 1.00 45.62 O
ATOM 11 C2' C B1901 105.803 111.361 83.212 1.00 45.62 C
ATOM 12 O2' C B1901 104.533 111.202 82.620 1.00 47.64 O
ATOM 13 C1' C B1901 106.870 110.942 82.197 1.00 46.42 C
ATOM 14 N1 C B1901 108.071 110.306 82.780 1.00 49.10 N
ATOM 15 C2 C B1901 108.044 108.927 83.067 1.00 50.58 C
ATOM 16 O2 C B1901 107.007 108.279 82.839 1.00 52.13 O
ATOM 17 N3 C B1901 109.149 108.338 83.583 1.00 50.24 N
ATOM 18 C4 C B1901 110.245 109.063 83.817 1.00 49.49 C
ATOM 19 N4 C B1901 111.308 108.442 84.330 1.00 48.45 N
ATOM 20 C5 C B1901 110.300 110.460 83.539 1.00 49.04 C
ATOM 21 C6 C B1901 109.202 111.035 83.030 1.00 48.87 C
ATOM 22 P G B1902 104.806 113.874 85.395 1.00 49.53 P
ATOM 23 OP1 G B1902 103.435 114.418 85.515 1.00 52.17 O
ATOM 24 OP2 G B1902 105.958 114.642 85.944 1.00 49.34 O
ATOM 25 O5' G B1902 104.812 112.424 86.035 1.00 46.89 O
TER
ATOM 2 P C A1898 119.988 112.097 82.582 1.00 42.87 P
ATOM 3 OP1 C A1898 120.481 113.367 83.179 1.00 44.35 O
ATOM 4 OP2 C A1898 120.421 110.797 83.154 1.00 42.65 O
ATOM 5 O5' C A1898 118.399 112.135 82.611 1.00 44.86 O
ATOM 6 C5' C A1898 117.668 113.275 82.118 1.00 44.41 C
ATOM 7 C4' C A1898 116.513 113.572 83.040 1.00 44.66 C
ATOM 8 O4' C A1898 115.706 112.376 83.167 1.00 45.84 O
ATOM 9 C3' C A1898 116.917 113.934 84.461 1.00 44.07 C
ATOM 10 O3' C A1898 117.102 115.345 84.527 1.00 45.12 O
ATOM 11 C2' C A1898 115.720 113.472 85.284 1.00 43.24 C
ATOM 12 O2' C A1898 114.673 114.408 85.267 1.00 42.44 O
ATOM 13 C1' C A1898 115.258 112.240 84.500 1.00 45.04 C
ATOM 14 N1 C A1898 115.686 110.917 84.984 1.00 46.13 N
ATOM 15 C2 C A1898 114.750 109.883 84.993 1.00 48.48 C
ATOM 16 O2 C A1898 113.584 110.124 84.643 1.00 50.08 O
ATOM 17 N3 C A1898 115.132 108.646 85.387 1.00 49.06 N
ATOM 18 C4 C A1898 116.389 108.428 85.772 1.00 47.66 C
ATOM 19 N4 C A1898 116.718 107.194 86.141 1.00 48.84 N
ATOM 20 C5 C A1898 117.360 109.468 85.793 1.00 47.67 C
ATOM 21 C6 C A1898 116.970 110.687 85.396 1.00 47.75 C
ATOM 22 P A A1899 117.911 116.004 85.747 1.00 46.10 P
ATOM 23 OP1 A A1899 119.311 116.196 85.281 1.00 49.07 O
ATOM 24 OP2 A A1899 117.649 115.251 87.001 1.00 45.69 O
ATOM 25 O5' A A1899 117.240 117.438 85.895 1.00 44.94 O
TER
ATOM 1 O3' A B1900 110.338 115.859 81.997 1.00 46.06 O
ATOM 2 P C B1901 109.433 115.605 83.318 1.00 43.49 P
ATOM 3 OP1 C B1901 108.553 116.792 83.462 1.00 42.51 O
ATOM 4 OP2 C B1901 110.288 115.193 84.454 1.00 43.63 O
ATOM 5 O5' C B1901 108.519 114.357 82.945 1.00 43.71 O
ATOM 6 C5' C B1901 107.449 114.481 81.990 1.00 45.26 C
ATOM 7 C4' C B1901 106.567 113.258 82.028 1.00 44.88 C
ATOM 8 O4' C B1901 107.266 112.109 81.494 1.00 44.98 O
ATOM 9 C3' C B1901 106.143 112.828 83.416 1.00 45.73 C
ATOM 10 O3' C B1901 105.025 113.588 83.838 1.00 45.62 O
ATOM 11 C2' C B1901 105.803 111.361 83.212 1.00 45.62 C
ATOM 12 O2' C B1901 104.533 111.202 82.620 1.00 47.64 O
ATOM 13 C1' C B1901 106.870 110.942 82.197 1.00 46.42 C
ATOM 14 N1 C B1901 108.071 110.306 82.780 1.00 49.10 N
ATOM 15 C2 C B1901 108.044 108.927 83.067 1.00 50.58 C
ATOM 16 O2 C B1901 107.007 108.279 82.839 1.00 52.13 O
ATOM 17 N3 C B1901 109.149 108.338 83.583 1.00 50.24 N
ATOM 18 C4 C B1901 110.245 109.063 83.817 1.00 49.49 C
ATOM 19 N4 C B1901 111.308 108.442 84.330 1.00 48.45 N
ATOM 20 C5 C B1901 110.300 110.460 83.539 1.00 49.04 C
ATOM 21 C6 C B1901 109.202 111.035 83.030 1.00 48.87 C
ATOM 22 P G B1902 104.806 113.874 85.395 1.00 49.53 P
ATOM 23 OP1 G B1902 103.435 114.418 85.515 1.00 52.17 O
ATOM 24 OP2 G B1902 105.958 114.642 85.944 1.00 49.34 O
ATOM 25 O5' G B1902 104.812 112.424 86.035 1.00 46.89 O
TER
Atoms:
C2: (114.750,109.883,84.993)
OP1: (120.481,113.367,83.179)
OP2: (120.421,110.797,83.154)
C4: (116.389,108.428,85.772)
O5': (118.399,112.135,82.611)
C3': (116.917,113.934,84.461)
C1': (115.258,112.240,84.500)
O4': (115.706,112.376,83.167)
C5': (117.668,113.275,82.118)
P: (119.988,112.097,82.582)
O2: (113.584,110.124,84.643)
C4': (116.513,113.572,83.040)
C2': (115.720,113.472,85.284)
O2': (114.673,114.408,85.267)
N1: (115.686,110.917,84.984)
N3: (115.132,108.646,85.387)
N4: (116.718,107.194,86.141)
C6: (116.970,110.687,85.396)
C5: (117.360,109.468,85.793)
O3': (117.102,115.345,84.527)
OP1: (120.481,113.367,83.179)
OP2: (120.421,110.797,83.154)
C4: (116.389,108.428,85.772)
O5': (118.399,112.135,82.611)
C3': (116.917,113.934,84.461)
C1': (115.258,112.240,84.500)
O4': (115.706,112.376,83.167)
C5': (117.668,113.275,82.118)
P: (119.988,112.097,82.582)
O2: (113.584,110.124,84.643)
C4': (116.513,113.572,83.040)
C2': (115.720,113.472,85.284)
O2': (114.673,114.408,85.267)
N1: (115.686,110.917,84.984)
N3: (115.132,108.646,85.387)
N4: (116.718,107.194,86.141)
C6: (116.970,110.687,85.396)
C5: (117.360,109.468,85.793)
O3': (117.102,115.345,84.527)
C2: (108.044,108.927,83.067)
OP1: (108.553,116.792,83.462)
OP2: (110.288,115.193,84.454)
C4: (110.245,109.063,83.817)
O5': (108.519,114.357,82.945)
C3': (106.143,112.828,83.416)
C1': (106.870,110.942,82.197)
O4': (107.266,112.109,81.494)
C5': (107.449,114.481,81.990)
P: (109.433,115.605,83.318)
O2: (107.007,108.279,82.839)
C4': (106.567,113.258,82.028)
C2': (105.803,111.361,83.212)
O2': (104.533,111.202,82.620)
N1: (108.071,110.306,82.780)
N3: (109.149,108.338,83.583)
N4: (111.308,108.442,84.330)
C6: (109.202,111.035,83.030)
C5: (110.300,110.460,83.539)
O3': (105.025,113.588,83.838)
OP1: (108.553,116.792,83.462)
OP2: (110.288,115.193,84.454)
C4: (110.245,109.063,83.817)
O5': (108.519,114.357,82.945)
C3': (106.143,112.828,83.416)
C1': (106.870,110.942,82.197)
O4': (107.266,112.109,81.494)
C5': (107.449,114.481,81.990)
P: (109.433,115.605,83.318)
O2: (107.007,108.279,82.839)
C4': (106.567,113.258,82.028)
C2': (105.803,111.361,83.212)
O2': (104.533,111.202,82.620)
N1: (108.071,110.306,82.780)
N3: (109.149,108.338,83.583)
N4: (111.308,108.442,84.330)
C6: (109.202,111.035,83.030)
C5: (110.300,110.460,83.539)
O3': (105.025,113.588,83.838)
Image (generated by PyMOL):