Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01898:01901
Extra
PDB:
ATOM 1 O3' U A1897 120.404 112.093 80.996 1.00 48.32 O
ATOM 2 P C A1898 120.093 112.075 82.564 1.00 48.94 P
ATOM 3 OP1 C A1898 120.652 113.309 83.173 1.00 49.69 O
ATOM 4 OP2 C A1898 120.492 110.751 83.089 1.00 49.10 O
ATOM 5 O5' C A1898 118.509 112.146 82.639 1.00 50.26 O
ATOM 6 C5' C A1898 117.787 113.280 82.142 1.00 50.46 C
ATOM 7 C4' C A1898 116.609 113.549 83.036 1.00 51.33 C
ATOM 8 O4' C A1898 115.817 112.342 83.133 1.00 50.98 O
ATOM 9 C3' C A1898 116.982 113.906 84.463 1.00 50.98 C
ATOM 10 O3' C A1898 117.109 115.324 84.524 1.00 51.92 O
ATOM 11 C2' C A1898 115.781 113.411 85.259 1.00 51.89 C
ATOM 12 O2' C A1898 114.723 114.341 85.241 1.00 53.52 O
ATOM 13 C1' C A1898 115.354 112.180 84.452 1.00 52.47 C
ATOM 14 N1 C A1898 115.815 110.866 84.924 1.00 54.84 N
ATOM 15 C2 C A1898 114.917 109.792 84.904 1.00 56.94 C
ATOM 16 O2 C A1898 113.762 109.976 84.494 1.00 57.72 O
ATOM 17 N3 C A1898 115.329 108.578 85.326 1.00 57.97 N
ATOM 18 C4 C A1898 116.581 108.411 85.749 1.00 57.95 C
ATOM 19 N4 C A1898 116.946 107.196 86.155 1.00 58.94 N
ATOM 20 C5 C A1898 117.516 109.483 85.776 1.00 57.52 C
ATOM 21 C6 C A1898 117.095 110.682 85.363 1.00 56.21 C
ATOM 22 P A A1899 118.031 116.012 85.638 1.00 51.98 P
ATOM 23 OP1 A A1899 119.387 116.182 85.065 1.00 53.48 O
ATOM 24 OP2 A A1899 117.857 115.289 86.919 1.00 50.91 O
ATOM 25 O5' A A1899 117.396 117.460 85.786 1.00 50.79 O
TER
ATOM 1 O3' A B1900 110.331 115.846 81.992 1.00 47.68 O
ATOM 2 P C B1901 109.473 115.576 83.330 1.00 47.71 P
ATOM 3 OP1 C B1901 108.593 116.759 83.521 1.00 46.25 O
ATOM 4 OP2 C B1901 110.366 115.142 84.427 1.00 46.55 O
ATOM 5 O5' C B1901 108.539 114.343 82.964 1.00 48.80 O
ATOM 6 C5' C B1901 107.454 114.486 82.027 1.00 51.22 C
ATOM 7 C4' C B1901 106.599 113.244 82.032 1.00 53.09 C
ATOM 8 O4' C B1901 107.329 112.122 81.472 1.00 53.89 O
ATOM 9 C3' C B1901 106.216 112.779 83.420 1.00 54.00 C
ATOM 10 O3' C B1901 105.104 113.507 83.898 1.00 54.56 O
ATOM 11 C2' C B1901 105.919 111.305 83.203 1.00 54.50 C
ATOM 12 O2' C B1901 104.634 111.112 82.654 1.00 56.78 O
ATOM 13 C1' C B1901 106.981 110.934 82.163 1.00 54.83 C
ATOM 14 N1 C B1901 108.209 110.333 82.728 1.00 55.86 N
ATOM 15 C2 C B1901 108.203 108.965 83.066 1.00 57.33 C
ATOM 16 O2 C B1901 107.176 108.297 82.869 1.00 58.89 O
ATOM 17 N3 C B1901 109.318 108.408 83.595 1.00 56.91 N
ATOM 18 C4 C B1901 110.408 109.152 83.786 1.00 56.16 C
ATOM 19 N4 C B1901 111.480 108.559 84.319 1.00 55.26 N
ATOM 20 C5 C B1901 110.447 110.537 83.442 1.00 55.76 C
ATOM 21 C6 C B1901 109.337 111.081 82.923 1.00 55.04 C
ATOM 22 P G B1902 105.047 113.922 85.440 1.00 57.07 P
ATOM 23 OP1 G B1902 103.822 114.724 85.643 1.00 59.10 O
ATOM 24 OP2 G B1902 106.367 114.478 85.837 1.00 57.33 O
ATOM 25 O5' G B1902 104.837 112.530 86.173 1.00 57.07 O
TER
ATOM 2 P C A1898 120.093 112.075 82.564 1.00 48.94 P
ATOM 3 OP1 C A1898 120.652 113.309 83.173 1.00 49.69 O
ATOM 4 OP2 C A1898 120.492 110.751 83.089 1.00 49.10 O
ATOM 5 O5' C A1898 118.509 112.146 82.639 1.00 50.26 O
ATOM 6 C5' C A1898 117.787 113.280 82.142 1.00 50.46 C
ATOM 7 C4' C A1898 116.609 113.549 83.036 1.00 51.33 C
ATOM 8 O4' C A1898 115.817 112.342 83.133 1.00 50.98 O
ATOM 9 C3' C A1898 116.982 113.906 84.463 1.00 50.98 C
ATOM 10 O3' C A1898 117.109 115.324 84.524 1.00 51.92 O
ATOM 11 C2' C A1898 115.781 113.411 85.259 1.00 51.89 C
ATOM 12 O2' C A1898 114.723 114.341 85.241 1.00 53.52 O
ATOM 13 C1' C A1898 115.354 112.180 84.452 1.00 52.47 C
ATOM 14 N1 C A1898 115.815 110.866 84.924 1.00 54.84 N
ATOM 15 C2 C A1898 114.917 109.792 84.904 1.00 56.94 C
ATOM 16 O2 C A1898 113.762 109.976 84.494 1.00 57.72 O
ATOM 17 N3 C A1898 115.329 108.578 85.326 1.00 57.97 N
ATOM 18 C4 C A1898 116.581 108.411 85.749 1.00 57.95 C
ATOM 19 N4 C A1898 116.946 107.196 86.155 1.00 58.94 N
ATOM 20 C5 C A1898 117.516 109.483 85.776 1.00 57.52 C
ATOM 21 C6 C A1898 117.095 110.682 85.363 1.00 56.21 C
ATOM 22 P A A1899 118.031 116.012 85.638 1.00 51.98 P
ATOM 23 OP1 A A1899 119.387 116.182 85.065 1.00 53.48 O
ATOM 24 OP2 A A1899 117.857 115.289 86.919 1.00 50.91 O
ATOM 25 O5' A A1899 117.396 117.460 85.786 1.00 50.79 O
TER
ATOM 1 O3' A B1900 110.331 115.846 81.992 1.00 47.68 O
ATOM 2 P C B1901 109.473 115.576 83.330 1.00 47.71 P
ATOM 3 OP1 C B1901 108.593 116.759 83.521 1.00 46.25 O
ATOM 4 OP2 C B1901 110.366 115.142 84.427 1.00 46.55 O
ATOM 5 O5' C B1901 108.539 114.343 82.964 1.00 48.80 O
ATOM 6 C5' C B1901 107.454 114.486 82.027 1.00 51.22 C
ATOM 7 C4' C B1901 106.599 113.244 82.032 1.00 53.09 C
ATOM 8 O4' C B1901 107.329 112.122 81.472 1.00 53.89 O
ATOM 9 C3' C B1901 106.216 112.779 83.420 1.00 54.00 C
ATOM 10 O3' C B1901 105.104 113.507 83.898 1.00 54.56 O
ATOM 11 C2' C B1901 105.919 111.305 83.203 1.00 54.50 C
ATOM 12 O2' C B1901 104.634 111.112 82.654 1.00 56.78 O
ATOM 13 C1' C B1901 106.981 110.934 82.163 1.00 54.83 C
ATOM 14 N1 C B1901 108.209 110.333 82.728 1.00 55.86 N
ATOM 15 C2 C B1901 108.203 108.965 83.066 1.00 57.33 C
ATOM 16 O2 C B1901 107.176 108.297 82.869 1.00 58.89 O
ATOM 17 N3 C B1901 109.318 108.408 83.595 1.00 56.91 N
ATOM 18 C4 C B1901 110.408 109.152 83.786 1.00 56.16 C
ATOM 19 N4 C B1901 111.480 108.559 84.319 1.00 55.26 N
ATOM 20 C5 C B1901 110.447 110.537 83.442 1.00 55.76 C
ATOM 21 C6 C B1901 109.337 111.081 82.923 1.00 55.04 C
ATOM 22 P G B1902 105.047 113.922 85.440 1.00 57.07 P
ATOM 23 OP1 G B1902 103.822 114.724 85.643 1.00 59.10 O
ATOM 24 OP2 G B1902 106.367 114.478 85.837 1.00 57.33 O
ATOM 25 O5' G B1902 104.837 112.530 86.173 1.00 57.07 O
TER
Atoms:
C2: (114.917,109.792,84.904)
OP1: (120.652,113.309,83.173)
OP2: (120.492,110.751,83.089)
C4: (116.581,108.411,85.749)
O5': (118.509,112.146,82.639)
C3': (116.982,113.906,84.463)
C1': (115.354,112.180,84.452)
O4': (115.817,112.342,83.133)
C5': (117.787,113.280,82.142)
P: (120.093,112.075,82.564)
O2: (113.762,109.976,84.494)
C4': (116.609,113.549,83.036)
C2': (115.781,113.411,85.259)
O2': (114.723,114.341,85.241)
N1: (115.815,110.866,84.924)
N3: (115.329,108.578,85.326)
N4: (116.946,107.196,86.155)
C6: (117.095,110.682,85.363)
C5: (117.516,109.483,85.776)
O3': (117.109,115.324,84.524)
OP1: (120.652,113.309,83.173)
OP2: (120.492,110.751,83.089)
C4: (116.581,108.411,85.749)
O5': (118.509,112.146,82.639)
C3': (116.982,113.906,84.463)
C1': (115.354,112.180,84.452)
O4': (115.817,112.342,83.133)
C5': (117.787,113.280,82.142)
P: (120.093,112.075,82.564)
O2: (113.762,109.976,84.494)
C4': (116.609,113.549,83.036)
C2': (115.781,113.411,85.259)
O2': (114.723,114.341,85.241)
N1: (115.815,110.866,84.924)
N3: (115.329,108.578,85.326)
N4: (116.946,107.196,86.155)
C6: (117.095,110.682,85.363)
C5: (117.516,109.483,85.776)
O3': (117.109,115.324,84.524)
C2: (108.203,108.965,83.066)
OP1: (108.593,116.759,83.521)
OP2: (110.366,115.142,84.427)
C4: (110.408,109.152,83.786)
O5': (108.539,114.343,82.964)
C3': (106.216,112.779,83.420)
C1': (106.981,110.934,82.163)
O4': (107.329,112.122,81.472)
C5': (107.454,114.486,82.027)
P: (109.473,115.576,83.330)
O2: (107.176,108.297,82.869)
C4': (106.599,113.244,82.032)
C2': (105.919,111.305,83.203)
O2': (104.634,111.112,82.654)
N1: (108.209,110.333,82.728)
N3: (109.318,108.408,83.595)
N4: (111.480,108.559,84.319)
C6: (109.337,111.081,82.923)
C5: (110.447,110.537,83.442)
O3': (105.104,113.507,83.898)
OP1: (108.593,116.759,83.521)
OP2: (110.366,115.142,84.427)
C4: (110.408,109.152,83.786)
O5': (108.539,114.343,82.964)
C3': (106.216,112.779,83.420)
C1': (106.981,110.934,82.163)
O4': (107.329,112.122,81.472)
C5': (107.454,114.486,82.027)
P: (109.473,115.576,83.330)
O2: (107.176,108.297,82.869)
C4': (106.599,113.244,82.032)
C2': (105.919,111.305,83.203)
O2': (104.634,111.112,82.654)
N1: (108.209,110.333,82.728)
N3: (109.318,108.408,83.595)
N4: (111.480,108.559,84.319)
C6: (109.337,111.081,82.923)
C5: (110.447,110.537,83.442)
O3': (105.104,113.507,83.898)
Image (generated by PyMOL):