Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X18:X22
Extra
PDB:
ATOM 1 O3' C A 17 8.776 -5.714 20.051 1.00 37.01 O
ATOM 2 P U A 18 8.558 -5.012 21.472 1.00 38.16 P
ATOM 3 OP1 U A 18 7.651 -3.858 21.278 1.00 38.58 O
ATOM 4 OP2 U A 18 9.888 -4.811 22.086 1.00 38.98 O
ATOM 5 O5' U A 18 7.794 -6.127 22.325 1.00 38.15 O
ATOM 6 C5' U A 18 7.670 -5.968 23.732 1.00 38.07 C
ATOM 7 C4' U A 18 6.280 -6.350 24.211 1.00 37.93 C
ATOM 8 O4' U A 18 5.282 -5.454 23.657 1.00 37.65 O
ATOM 9 C3' U A 18 5.812 -7.749 23.826 1.00 37.90 C
ATOM 10 O3' U A 18 4.972 -8.226 24.861 1.00 38.03 O
ATOM 11 C2' U A 18 4.990 -7.480 22.570 1.00 37.53 C
ATOM 12 O2' U A 18 4.074 -8.522 22.297 1.00 36.85 O
ATOM 13 C1' U A 18 4.265 -6.238 23.065 1.00 37.51 C
ATOM 14 N1 U A 18 3.558 -5.409 22.050 1.00 37.79 N
ATOM 15 C2 U A 18 2.193 -5.550 21.906 1.00 37.83 C
ATOM 16 O2 U A 18 1.531 -6.352 22.542 1.00 38.23 O
ATOM 17 N3 U A 18 1.626 -4.721 20.970 1.00 37.22 N
ATOM 18 C4 U A 18 2.271 -3.777 20.194 1.00 36.70 C
ATOM 19 O4 U A 18 1.624 -3.105 19.401 1.00 36.14 O
ATOM 20 C5 U A 18 3.691 -3.677 20.412 1.00 37.07 C
ATOM 21 C6 U A 18 4.267 -4.475 21.318 1.00 37.62 C
ATOM 22 P G A 19 5.517 -9.274 25.938 1.00 38.90 P
ATOM 23 OP1 G A 19 6.876 -8.862 26.352 1.00 38.39 O
ATOM 24 OP2 G A 19 5.280 -10.632 25.390 1.00 39.27 O
ATOM 25 O5' G A 19 4.510 -9.055 27.161 1.00 37.67 O
TER
ATOM 1 O3' G B 21 -7.714 -2.648 23.551 1.00 41.83 O
ATOM 2 P U B 22 -7.984 -3.227 22.083 1.00 43.63 P
ATOM 3 OP1 U B 22 -9.437 -3.130 21.818 1.00 43.38 O
ATOM 4 OP2 U B 22 -7.290 -4.529 21.964 1.00 43.52 O
ATOM 5 O5' U B 22 -7.207 -2.188 21.147 1.00 42.12 O
ATOM 6 C5' U B 22 -7.508 -0.801 21.208 1.00 40.85 C
ATOM 7 C4' U B 22 -6.395 0.004 20.567 1.00 39.65 C
ATOM 8 O4' U B 22 -5.190 -0.105 21.370 1.00 38.73 O
ATOM 9 C3' U B 22 -5.947 -0.471 19.192 1.00 39.24 C
ATOM 10 O3' U B 22 -6.831 -0.022 18.171 1.00 39.87 O
ATOM 11 C2' U B 22 -4.592 0.220 19.118 1.00 38.57 C
ATOM 12 O2' U B 22 -4.712 1.617 18.926 1.00 37.70 O
ATOM 13 C1' U B 22 -4.058 -0.066 20.519 1.00 37.42 C
ATOM 14 N1 U B 22 -3.306 -1.358 20.630 1.00 36.19 N
ATOM 15 C2 U B 22 -1.989 -1.411 20.214 1.00 35.37 C
ATOM 16 O2 U B 22 -1.393 -0.454 19.756 1.00 34.49 O
ATOM 17 N3 U B 22 -1.384 -2.634 20.359 1.00 34.96 N
ATOM 18 C4 U B 22 -1.952 -3.791 20.862 1.00 35.49 C
ATOM 19 O4 U B 22 -1.284 -4.818 20.928 1.00 36.14 O
ATOM 20 C5 U B 22 -3.328 -3.663 21.267 1.00 35.06 C
ATOM 21 C6 U B 22 -3.937 -2.478 21.139 1.00 35.86 C
ATOM 22 P G B 23 -7.229 -0.984 16.952 1.00 41.79 P
ATOM 23 OP1 G B 23 -8.410 -0.394 16.284 1.00 42.29 O
ATOM 24 OP2 G B 23 -7.287 -2.376 17.448 1.00 41.16 O
ATOM 25 O5' G B 23 -5.975 -0.867 15.960 1.00 40.54 O
TER
ATOM 2 P U A 18 8.558 -5.012 21.472 1.00 38.16 P
ATOM 3 OP1 U A 18 7.651 -3.858 21.278 1.00 38.58 O
ATOM 4 OP2 U A 18 9.888 -4.811 22.086 1.00 38.98 O
ATOM 5 O5' U A 18 7.794 -6.127 22.325 1.00 38.15 O
ATOM 6 C5' U A 18 7.670 -5.968 23.732 1.00 38.07 C
ATOM 7 C4' U A 18 6.280 -6.350 24.211 1.00 37.93 C
ATOM 8 O4' U A 18 5.282 -5.454 23.657 1.00 37.65 O
ATOM 9 C3' U A 18 5.812 -7.749 23.826 1.00 37.90 C
ATOM 10 O3' U A 18 4.972 -8.226 24.861 1.00 38.03 O
ATOM 11 C2' U A 18 4.990 -7.480 22.570 1.00 37.53 C
ATOM 12 O2' U A 18 4.074 -8.522 22.297 1.00 36.85 O
ATOM 13 C1' U A 18 4.265 -6.238 23.065 1.00 37.51 C
ATOM 14 N1 U A 18 3.558 -5.409 22.050 1.00 37.79 N
ATOM 15 C2 U A 18 2.193 -5.550 21.906 1.00 37.83 C
ATOM 16 O2 U A 18 1.531 -6.352 22.542 1.00 38.23 O
ATOM 17 N3 U A 18 1.626 -4.721 20.970 1.00 37.22 N
ATOM 18 C4 U A 18 2.271 -3.777 20.194 1.00 36.70 C
ATOM 19 O4 U A 18 1.624 -3.105 19.401 1.00 36.14 O
ATOM 20 C5 U A 18 3.691 -3.677 20.412 1.00 37.07 C
ATOM 21 C6 U A 18 4.267 -4.475 21.318 1.00 37.62 C
ATOM 22 P G A 19 5.517 -9.274 25.938 1.00 38.90 P
ATOM 23 OP1 G A 19 6.876 -8.862 26.352 1.00 38.39 O
ATOM 24 OP2 G A 19 5.280 -10.632 25.390 1.00 39.27 O
ATOM 25 O5' G A 19 4.510 -9.055 27.161 1.00 37.67 O
TER
ATOM 1 O3' G B 21 -7.714 -2.648 23.551 1.00 41.83 O
ATOM 2 P U B 22 -7.984 -3.227 22.083 1.00 43.63 P
ATOM 3 OP1 U B 22 -9.437 -3.130 21.818 1.00 43.38 O
ATOM 4 OP2 U B 22 -7.290 -4.529 21.964 1.00 43.52 O
ATOM 5 O5' U B 22 -7.207 -2.188 21.147 1.00 42.12 O
ATOM 6 C5' U B 22 -7.508 -0.801 21.208 1.00 40.85 C
ATOM 7 C4' U B 22 -6.395 0.004 20.567 1.00 39.65 C
ATOM 8 O4' U B 22 -5.190 -0.105 21.370 1.00 38.73 O
ATOM 9 C3' U B 22 -5.947 -0.471 19.192 1.00 39.24 C
ATOM 10 O3' U B 22 -6.831 -0.022 18.171 1.00 39.87 O
ATOM 11 C2' U B 22 -4.592 0.220 19.118 1.00 38.57 C
ATOM 12 O2' U B 22 -4.712 1.617 18.926 1.00 37.70 O
ATOM 13 C1' U B 22 -4.058 -0.066 20.519 1.00 37.42 C
ATOM 14 N1 U B 22 -3.306 -1.358 20.630 1.00 36.19 N
ATOM 15 C2 U B 22 -1.989 -1.411 20.214 1.00 35.37 C
ATOM 16 O2 U B 22 -1.393 -0.454 19.756 1.00 34.49 O
ATOM 17 N3 U B 22 -1.384 -2.634 20.359 1.00 34.96 N
ATOM 18 C4 U B 22 -1.952 -3.791 20.862 1.00 35.49 C
ATOM 19 O4 U B 22 -1.284 -4.818 20.928 1.00 36.14 O
ATOM 20 C5 U B 22 -3.328 -3.663 21.267 1.00 35.06 C
ATOM 21 C6 U B 22 -3.937 -2.478 21.139 1.00 35.86 C
ATOM 22 P G B 23 -7.229 -0.984 16.952 1.00 41.79 P
ATOM 23 OP1 G B 23 -8.410 -0.394 16.284 1.00 42.29 O
ATOM 24 OP2 G B 23 -7.287 -2.376 17.448 1.00 41.16 O
ATOM 25 O5' G B 23 -5.975 -0.867 15.960 1.00 40.54 O
TER
Atoms:
C4: (2.271,-3.777,20.194)
N3: (1.626,-4.721,20.970)
OP1: (7.651,-3.858,21.278)
OP2: (9.888,-4.811,22.086)
C2: (2.193,-5.550,21.906)
C1': (4.265,-6.238,23.065)
C3': (5.812,-7.749,23.826)
O5': (7.794,-6.127,22.325)
O4': (5.282,-5.454,23.657)
C5': (7.670,-5.968,23.732)
P: (8.558,-5.012,21.472)
C4': (6.280,-6.350,24.211)
C2': (4.990,-7.480,22.570)
O2': (4.074,-8.522,22.297)
N1: (3.558,-5.409,22.050)
O4: (1.624,-3.105,19.401)
O2: (1.531,-6.352,22.542)
C6: (4.267,-4.475,21.318)
C5: (3.691,-3.677,20.412)
O3': (4.972,-8.226,24.861)
N3: (1.626,-4.721,20.970)
OP1: (7.651,-3.858,21.278)
OP2: (9.888,-4.811,22.086)
C2: (2.193,-5.550,21.906)
C1': (4.265,-6.238,23.065)
C3': (5.812,-7.749,23.826)
O5': (7.794,-6.127,22.325)
O4': (5.282,-5.454,23.657)
C5': (7.670,-5.968,23.732)
P: (8.558,-5.012,21.472)
C4': (6.280,-6.350,24.211)
C2': (4.990,-7.480,22.570)
O2': (4.074,-8.522,22.297)
N1: (3.558,-5.409,22.050)
O4: (1.624,-3.105,19.401)
O2: (1.531,-6.352,22.542)
C6: (4.267,-4.475,21.318)
C5: (3.691,-3.677,20.412)
O3': (4.972,-8.226,24.861)
C4: (-1.952,-3.791,20.862)
N3: (-1.384,-2.634,20.359)
OP1: (-9.437,-3.130,21.818)
OP2: (-7.290,-4.529,21.964)
C2: (-1.989,-1.411,20.214)
C1': (-4.058,-0.066,20.519)
C3': (-5.947,-0.471,19.192)
O5': (-7.207,-2.188,21.147)
O4': (-5.190,-0.105,21.370)
C5': (-7.508,-0.801,21.208)
P: (-7.984,-3.227,22.083)
C4': (-6.395,0.004,20.567)
C2': (-4.592,0.220,19.118)
O2': (-4.712,1.617,18.926)
N1: (-3.306,-1.358,20.630)
O4: (-1.284,-4.818,20.928)
O2: (-1.393,-0.454,19.756)
C6: (-3.937,-2.478,21.139)
C5: (-3.328,-3.663,21.267)
O3': (-6.831,-0.022,18.171)
N3: (-1.384,-2.634,20.359)
OP1: (-9.437,-3.130,21.818)
OP2: (-7.290,-4.529,21.964)
C2: (-1.989,-1.411,20.214)
C1': (-4.058,-0.066,20.519)
C3': (-5.947,-0.471,19.192)
O5': (-7.207,-2.188,21.147)
O4': (-5.190,-0.105,21.370)
C5': (-7.508,-0.801,21.208)
P: (-7.984,-3.227,22.083)
C4': (-6.395,0.004,20.567)
C2': (-4.592,0.220,19.118)
O2': (-4.712,1.617,18.926)
N1: (-3.306,-1.358,20.630)
O4: (-1.284,-4.818,20.928)
O2: (-1.393,-0.454,19.756)
C6: (-3.937,-2.478,21.139)
C5: (-3.328,-3.663,21.267)
O3': (-6.831,-0.022,18.171)
Image (generated by PyMOL):