Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DIR:A39:A51
Extra
PDB:
ATOM 1 O3' A A 38 -6.992 64.165 -2.420 1.00 49.60 O
ATOM 2 P U A 39 -6.714 63.440 -3.822 1.00 48.75 P
ATOM 3 OP1 U A 39 -5.277 63.573 -4.163 1.00 48.93 O
ATOM 4 OP2 U A 39 -7.741 63.936 -4.767 1.00 48.70 O
ATOM 5 O5' U A 39 -7.038 61.902 -3.510 1.00 47.94 O
ATOM 6 C5' U A 39 -6.014 60.967 -3.154 1.00 46.71 C
ATOM 7 C4' U A 39 -6.502 59.987 -2.092 1.00 45.86 C
ATOM 8 O4' U A 39 -6.945 60.712 -0.909 1.00 45.82 O
ATOM 9 C3' U A 39 -7.670 59.081 -2.497 1.00 45.17 C
ATOM 10 O3' U A 39 -7.518 57.764 -1.950 1.00 44.41 O
ATOM 11 C2' U A 39 -8.858 59.781 -1.841 1.00 45.31 C
ATOM 12 O2' U A 39 -9.954 58.915 -1.625 1.00 45.02 O
ATOM 13 C1' U A 39 -8.207 60.195 -0.521 1.00 45.93 C
ATOM 14 N1 U A 39 -8.967 61.188 0.333 1.00 46.13 N
ATOM 15 C2 U A 39 -9.466 60.788 1.566 1.00 46.10 C
ATOM 16 O2 U A 39 -9.335 59.667 2.019 1.00 46.16 O
ATOM 17 N3 U A 39 -10.141 61.756 2.272 1.00 46.17 N
ATOM 18 C4 U A 39 -10.369 63.064 1.879 1.00 46.67 C
ATOM 19 O4 U A 39 -10.994 63.823 2.614 1.00 46.82 O
ATOM 20 C5 U A 39 -9.826 63.413 0.587 1.00 46.86 C
ATOM 21 C6 U A 39 -9.160 62.484 -0.119 1.00 46.68 C
ATOM 22 P C A 40 -6.605 56.607 -2.586 1.00 43.60 P
ATOM 23 OP1 C A 40 -6.031 57.102 -3.861 1.00 43.41 O
ATOM 24 OP2 C A 40 -7.408 55.363 -2.571 1.00 43.65 O
ATOM 25 O5' C A 40 -5.406 56.449 -1.530 1.00 42.22 O
TER
ATOM 1 O3' A B 50 -17.866 56.177 7.769 1.00 26.30 O
ATOM 2 P U B 51 -18.544 57.192 6.721 1.00 27.73 P
ATOM 3 OP1 U B 51 -19.760 57.796 7.326 1.00 27.56 O
ATOM 4 OP2 U B 51 -18.666 56.483 5.425 1.00 27.57 O
ATOM 5 O5' U B 51 -17.406 58.312 6.558 1.00 28.23 O
ATOM 6 C5' U B 51 -17.088 59.212 7.621 1.00 28.67 C
ATOM 7 C4' U B 51 -16.318 60.410 7.094 1.00 29.11 C
ATOM 8 O4' U B 51 -15.022 59.946 6.640 1.00 29.52 O
ATOM 9 C3' U B 51 -16.980 61.144 5.913 1.00 29.22 C
ATOM 10 O3' U B 51 -17.618 62.429 6.235 1.00 28.49 O
ATOM 11 C2' U B 51 -15.916 61.177 4.801 1.00 29.81 C
ATOM 12 O2' U B 51 -15.656 62.460 4.264 1.00 30.35 O
ATOM 13 C1' U B 51 -14.648 60.626 5.455 1.00 30.48 C
ATOM 14 N1 U B 51 -13.910 59.700 4.519 1.00 31.25 N
ATOM 15 C2 U B 51 -12.767 60.144 3.863 1.00 31.37 C
ATOM 16 O2 U B 51 -12.287 61.260 3.999 1.00 31.56 O
ATOM 17 N3 U B 51 -12.184 59.215 3.028 1.00 31.15 N
ATOM 18 C4 U B 51 -12.621 57.922 2.779 1.00 31.07 C
ATOM 19 O4 U B 51 -12.000 57.206 2.002 1.00 30.95 O
ATOM 20 C5 U B 51 -13.815 57.530 3.488 1.00 31.27 C
ATOM 21 C6 U B 51 -14.400 58.415 4.309 1.00 31.45 C
ATOM 22 P C B 52 -16.974 63.717 6.958 1.00 27.81 P
ATOM 23 OP1 C B 52 -17.652 64.893 6.367 1.00 27.25 O
ATOM 24 OP2 C B 52 -15.493 63.639 6.937 1.00 27.89 O
ATOM 25 O5' C B 52 -17.472 63.571 8.473 1.00 27.00 O
TER
ATOM 2 P U A 39 -6.714 63.440 -3.822 1.00 48.75 P
ATOM 3 OP1 U A 39 -5.277 63.573 -4.163 1.00 48.93 O
ATOM 4 OP2 U A 39 -7.741 63.936 -4.767 1.00 48.70 O
ATOM 5 O5' U A 39 -7.038 61.902 -3.510 1.00 47.94 O
ATOM 6 C5' U A 39 -6.014 60.967 -3.154 1.00 46.71 C
ATOM 7 C4' U A 39 -6.502 59.987 -2.092 1.00 45.86 C
ATOM 8 O4' U A 39 -6.945 60.712 -0.909 1.00 45.82 O
ATOM 9 C3' U A 39 -7.670 59.081 -2.497 1.00 45.17 C
ATOM 10 O3' U A 39 -7.518 57.764 -1.950 1.00 44.41 O
ATOM 11 C2' U A 39 -8.858 59.781 -1.841 1.00 45.31 C
ATOM 12 O2' U A 39 -9.954 58.915 -1.625 1.00 45.02 O
ATOM 13 C1' U A 39 -8.207 60.195 -0.521 1.00 45.93 C
ATOM 14 N1 U A 39 -8.967 61.188 0.333 1.00 46.13 N
ATOM 15 C2 U A 39 -9.466 60.788 1.566 1.00 46.10 C
ATOM 16 O2 U A 39 -9.335 59.667 2.019 1.00 46.16 O
ATOM 17 N3 U A 39 -10.141 61.756 2.272 1.00 46.17 N
ATOM 18 C4 U A 39 -10.369 63.064 1.879 1.00 46.67 C
ATOM 19 O4 U A 39 -10.994 63.823 2.614 1.00 46.82 O
ATOM 20 C5 U A 39 -9.826 63.413 0.587 1.00 46.86 C
ATOM 21 C6 U A 39 -9.160 62.484 -0.119 1.00 46.68 C
ATOM 22 P C A 40 -6.605 56.607 -2.586 1.00 43.60 P
ATOM 23 OP1 C A 40 -6.031 57.102 -3.861 1.00 43.41 O
ATOM 24 OP2 C A 40 -7.408 55.363 -2.571 1.00 43.65 O
ATOM 25 O5' C A 40 -5.406 56.449 -1.530 1.00 42.22 O
TER
ATOM 1 O3' A B 50 -17.866 56.177 7.769 1.00 26.30 O
ATOM 2 P U B 51 -18.544 57.192 6.721 1.00 27.73 P
ATOM 3 OP1 U B 51 -19.760 57.796 7.326 1.00 27.56 O
ATOM 4 OP2 U B 51 -18.666 56.483 5.425 1.00 27.57 O
ATOM 5 O5' U B 51 -17.406 58.312 6.558 1.00 28.23 O
ATOM 6 C5' U B 51 -17.088 59.212 7.621 1.00 28.67 C
ATOM 7 C4' U B 51 -16.318 60.410 7.094 1.00 29.11 C
ATOM 8 O4' U B 51 -15.022 59.946 6.640 1.00 29.52 O
ATOM 9 C3' U B 51 -16.980 61.144 5.913 1.00 29.22 C
ATOM 10 O3' U B 51 -17.618 62.429 6.235 1.00 28.49 O
ATOM 11 C2' U B 51 -15.916 61.177 4.801 1.00 29.81 C
ATOM 12 O2' U B 51 -15.656 62.460 4.264 1.00 30.35 O
ATOM 13 C1' U B 51 -14.648 60.626 5.455 1.00 30.48 C
ATOM 14 N1 U B 51 -13.910 59.700 4.519 1.00 31.25 N
ATOM 15 C2 U B 51 -12.767 60.144 3.863 1.00 31.37 C
ATOM 16 O2 U B 51 -12.287 61.260 3.999 1.00 31.56 O
ATOM 17 N3 U B 51 -12.184 59.215 3.028 1.00 31.15 N
ATOM 18 C4 U B 51 -12.621 57.922 2.779 1.00 31.07 C
ATOM 19 O4 U B 51 -12.000 57.206 2.002 1.00 30.95 O
ATOM 20 C5 U B 51 -13.815 57.530 3.488 1.00 31.27 C
ATOM 21 C6 U B 51 -14.400 58.415 4.309 1.00 31.45 C
ATOM 22 P C B 52 -16.974 63.717 6.958 1.00 27.81 P
ATOM 23 OP1 C B 52 -17.652 64.893 6.367 1.00 27.25 O
ATOM 24 OP2 C B 52 -15.493 63.639 6.937 1.00 27.89 O
ATOM 25 O5' C B 52 -17.472 63.571 8.473 1.00 27.00 O
TER
Atoms:
C4: (-10.369,63.064,1.879)
N3: (-10.141,61.756,2.272)
OP1: (-5.277,63.573,-4.163)
OP2: (-7.741,63.936,-4.767)
C2: (-9.466,60.788,1.566)
C1': (-8.207,60.195,-0.521)
C3': (-7.670,59.081,-2.497)
O5': (-7.038,61.902,-3.510)
O4': (-6.945,60.712,-0.909)
C5': (-6.014,60.967,-3.154)
P: (-6.714,63.440,-3.822)
C4': (-6.502,59.987,-2.092)
C2': (-8.858,59.781,-1.841)
O2': (-9.954,58.915,-1.625)
N1: (-8.967,61.188,0.333)
O4: (-10.994,63.823,2.614)
O2: (-9.335,59.667,2.019)
C6: (-9.160,62.484,-0.119)
C5: (-9.826,63.413,0.587)
O3': (-7.518,57.764,-1.950)
N3: (-10.141,61.756,2.272)
OP1: (-5.277,63.573,-4.163)
OP2: (-7.741,63.936,-4.767)
C2: (-9.466,60.788,1.566)
C1': (-8.207,60.195,-0.521)
C3': (-7.670,59.081,-2.497)
O5': (-7.038,61.902,-3.510)
O4': (-6.945,60.712,-0.909)
C5': (-6.014,60.967,-3.154)
P: (-6.714,63.440,-3.822)
C4': (-6.502,59.987,-2.092)
C2': (-8.858,59.781,-1.841)
O2': (-9.954,58.915,-1.625)
N1: (-8.967,61.188,0.333)
O4: (-10.994,63.823,2.614)
O2: (-9.335,59.667,2.019)
C6: (-9.160,62.484,-0.119)
C5: (-9.826,63.413,0.587)
O3': (-7.518,57.764,-1.950)
C4: (-12.621,57.922,2.779)
N3: (-12.184,59.215,3.028)
OP1: (-19.760,57.796,7.326)
OP2: (-18.666,56.483,5.425)
C2: (-12.767,60.144,3.863)
C1': (-14.648,60.626,5.455)
C3': (-16.980,61.144,5.913)
O5': (-17.406,58.312,6.558)
O4': (-15.022,59.946,6.640)
C5': (-17.088,59.212,7.621)
P: (-18.544,57.192,6.721)
C4': (-16.318,60.410,7.094)
C2': (-15.916,61.177,4.801)
O2': (-15.656,62.460,4.264)
N1: (-13.910,59.700,4.519)
O4: (-12.000,57.206,2.002)
O2: (-12.287,61.260,3.999)
C6: (-14.400,58.415,4.309)
C5: (-13.815,57.530,3.488)
O3': (-17.618,62.429,6.235)
N3: (-12.184,59.215,3.028)
OP1: (-19.760,57.796,7.326)
OP2: (-18.666,56.483,5.425)
C2: (-12.767,60.144,3.863)
C1': (-14.648,60.626,5.455)
C3': (-16.980,61.144,5.913)
O5': (-17.406,58.312,6.558)
O4': (-15.022,59.946,6.640)
C5': (-17.088,59.212,7.621)
P: (-18.544,57.192,6.721)
C4': (-16.318,60.410,7.094)
C2': (-15.916,61.177,4.801)
O2': (-15.656,62.460,4.264)
N1: (-13.910,59.700,4.519)
O4: (-12.000,57.206,2.002)
O2: (-12.287,61.260,3.999)
C6: (-14.400,58.415,4.309)
C5: (-13.815,57.530,3.488)
O3': (-17.618,62.429,6.235)
Image (generated by PyMOL):