Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DIZ:A39:A51
Extra
PDB:
ATOM 1 O3' A A 38 -6.990 64.279 -2.420 1.00 61.29 O
ATOM 2 P U A 39 -6.905 63.057 -3.459 1.00 60.47 P
ATOM 3 OP1 U A 39 -5.626 63.140 -4.204 1.00 60.52 O
ATOM 4 OP2 U A 39 -8.193 63.008 -4.191 1.00 60.44 O
ATOM 5 O5' U A 39 -6.860 61.791 -2.487 1.00 59.64 O
ATOM 6 C5' U A 39 -6.320 60.546 -2.906 1.00 58.60 C
ATOM 7 C4' U A 39 -6.871 59.432 -2.028 1.00 57.88 C
ATOM 8 O4' U A 39 -7.313 59.952 -0.740 1.00 58.06 O
ATOM 9 C3' U A 39 -8.082 58.688 -2.584 1.00 56.94 C
ATOM 10 O3' U A 39 -8.068 57.338 -2.098 1.00 55.26 O
ATOM 11 C2' U A 39 -9.236 59.497 -1.991 1.00 57.23 C
ATOM 12 O2' U A 39 -10.461 58.794 -2.012 1.00 56.97 O
ATOM 13 C1' U A 39 -8.696 59.675 -0.570 1.00 57.91 C
ATOM 14 N1 U A 39 -9.326 60.740 0.304 1.00 57.97 N
ATOM 15 C2 U A 39 -10.163 60.359 1.347 1.00 58.09 C
ATOM 16 O2 U A 39 -10.447 59.201 1.609 1.00 58.28 O
ATOM 17 N3 U A 39 -10.677 61.394 2.092 1.00 57.90 N
ATOM 18 C4 U A 39 -10.441 62.744 1.911 1.00 58.13 C
ATOM 19 O4 U A 39 -10.973 63.555 2.662 1.00 58.19 O
ATOM 20 C5 U A 39 -9.559 63.067 0.815 1.00 58.29 C
ATOM 21 C6 U A 39 -9.044 62.077 0.072 1.00 58.11 C
ATOM 22 P C A 40 -7.163 56.192 -2.762 1.00 53.76 P
ATOM 23 OP1 C A 40 -6.525 56.748 -3.979 1.00 53.65 O
ATOM 24 OP2 C A 40 -8.026 54.996 -2.874 1.00 53.68 O
ATOM 25 O5' C A 40 -6.000 55.913 -1.692 1.00 51.83 O
TER
ATOM 1 O3' A B 50 -18.266 56.096 7.883 1.00 42.86 O
ATOM 2 P U B 51 -18.904 57.228 6.949 1.00 43.40 P
ATOM 3 OP1 U B 51 -19.859 58.008 7.769 1.00 43.44 O
ATOM 4 OP2 U B 51 -19.367 56.600 5.692 1.00 43.16 O
ATOM 5 O5' U B 51 -17.638 58.135 6.598 1.00 43.58 O
ATOM 6 C5' U B 51 -17.126 59.029 7.572 1.00 44.32 C
ATOM 7 C4' U B 51 -16.626 60.306 6.925 1.00 44.73 C
ATOM 8 O4' U B 51 -15.320 60.060 6.353 1.00 45.36 O
ATOM 9 C3' U B 51 -17.509 60.892 5.817 1.00 44.86 C
ATOM 10 O3' U B 51 -17.951 62.260 6.039 1.00 44.61 O
ATOM 11 C2' U B 51 -16.706 60.667 4.525 1.00 45.19 C
ATOM 12 O2' U B 51 -16.769 61.733 3.599 1.00 45.67 O
ATOM 13 C1' U B 51 -15.269 60.468 5.002 1.00 45.60 C
ATOM 14 N1 U B 51 -14.518 59.415 4.231 1.00 46.09 N
ATOM 15 C2 U B 51 -13.246 59.678 3.740 1.00 46.02 C
ATOM 16 O2 U B 51 -12.658 60.736 3.883 1.00 46.10 O
ATOM 17 N3 U B 51 -12.670 58.635 3.053 1.00 45.72 N
ATOM 18 C4 U B 51 -13.223 57.389 2.815 1.00 45.74 C
ATOM 19 O4 U B 51 -12.590 56.560 2.179 1.00 45.98 O
ATOM 20 C5 U B 51 -14.541 57.182 3.353 1.00 45.83 C
ATOM 21 C6 U B 51 -15.121 58.181 4.028 1.00 46.10 C
ATOM 22 P C B 52 -17.207 63.406 6.890 1.00 44.30 P
ATOM 23 OP1 C B 52 -17.969 64.648 6.634 1.00 44.32 O
ATOM 24 OP2 C B 52 -15.752 63.373 6.618 1.00 44.05 O
ATOM 25 O5' C B 52 -17.460 63.029 8.421 1.00 43.71 O
TER
ATOM 2 P U A 39 -6.905 63.057 -3.459 1.00 60.47 P
ATOM 3 OP1 U A 39 -5.626 63.140 -4.204 1.00 60.52 O
ATOM 4 OP2 U A 39 -8.193 63.008 -4.191 1.00 60.44 O
ATOM 5 O5' U A 39 -6.860 61.791 -2.487 1.00 59.64 O
ATOM 6 C5' U A 39 -6.320 60.546 -2.906 1.00 58.60 C
ATOM 7 C4' U A 39 -6.871 59.432 -2.028 1.00 57.88 C
ATOM 8 O4' U A 39 -7.313 59.952 -0.740 1.00 58.06 O
ATOM 9 C3' U A 39 -8.082 58.688 -2.584 1.00 56.94 C
ATOM 10 O3' U A 39 -8.068 57.338 -2.098 1.00 55.26 O
ATOM 11 C2' U A 39 -9.236 59.497 -1.991 1.00 57.23 C
ATOM 12 O2' U A 39 -10.461 58.794 -2.012 1.00 56.97 O
ATOM 13 C1' U A 39 -8.696 59.675 -0.570 1.00 57.91 C
ATOM 14 N1 U A 39 -9.326 60.740 0.304 1.00 57.97 N
ATOM 15 C2 U A 39 -10.163 60.359 1.347 1.00 58.09 C
ATOM 16 O2 U A 39 -10.447 59.201 1.609 1.00 58.28 O
ATOM 17 N3 U A 39 -10.677 61.394 2.092 1.00 57.90 N
ATOM 18 C4 U A 39 -10.441 62.744 1.911 1.00 58.13 C
ATOM 19 O4 U A 39 -10.973 63.555 2.662 1.00 58.19 O
ATOM 20 C5 U A 39 -9.559 63.067 0.815 1.00 58.29 C
ATOM 21 C6 U A 39 -9.044 62.077 0.072 1.00 58.11 C
ATOM 22 P C A 40 -7.163 56.192 -2.762 1.00 53.76 P
ATOM 23 OP1 C A 40 -6.525 56.748 -3.979 1.00 53.65 O
ATOM 24 OP2 C A 40 -8.026 54.996 -2.874 1.00 53.68 O
ATOM 25 O5' C A 40 -6.000 55.913 -1.692 1.00 51.83 O
TER
ATOM 1 O3' A B 50 -18.266 56.096 7.883 1.00 42.86 O
ATOM 2 P U B 51 -18.904 57.228 6.949 1.00 43.40 P
ATOM 3 OP1 U B 51 -19.859 58.008 7.769 1.00 43.44 O
ATOM 4 OP2 U B 51 -19.367 56.600 5.692 1.00 43.16 O
ATOM 5 O5' U B 51 -17.638 58.135 6.598 1.00 43.58 O
ATOM 6 C5' U B 51 -17.126 59.029 7.572 1.00 44.32 C
ATOM 7 C4' U B 51 -16.626 60.306 6.925 1.00 44.73 C
ATOM 8 O4' U B 51 -15.320 60.060 6.353 1.00 45.36 O
ATOM 9 C3' U B 51 -17.509 60.892 5.817 1.00 44.86 C
ATOM 10 O3' U B 51 -17.951 62.260 6.039 1.00 44.61 O
ATOM 11 C2' U B 51 -16.706 60.667 4.525 1.00 45.19 C
ATOM 12 O2' U B 51 -16.769 61.733 3.599 1.00 45.67 O
ATOM 13 C1' U B 51 -15.269 60.468 5.002 1.00 45.60 C
ATOM 14 N1 U B 51 -14.518 59.415 4.231 1.00 46.09 N
ATOM 15 C2 U B 51 -13.246 59.678 3.740 1.00 46.02 C
ATOM 16 O2 U B 51 -12.658 60.736 3.883 1.00 46.10 O
ATOM 17 N3 U B 51 -12.670 58.635 3.053 1.00 45.72 N
ATOM 18 C4 U B 51 -13.223 57.389 2.815 1.00 45.74 C
ATOM 19 O4 U B 51 -12.590 56.560 2.179 1.00 45.98 O
ATOM 20 C5 U B 51 -14.541 57.182 3.353 1.00 45.83 C
ATOM 21 C6 U B 51 -15.121 58.181 4.028 1.00 46.10 C
ATOM 22 P C B 52 -17.207 63.406 6.890 1.00 44.30 P
ATOM 23 OP1 C B 52 -17.969 64.648 6.634 1.00 44.32 O
ATOM 24 OP2 C B 52 -15.752 63.373 6.618 1.00 44.05 O
ATOM 25 O5' C B 52 -17.460 63.029 8.421 1.00 43.71 O
TER
Atoms:
C4: (-10.441,62.744,1.911)
N3: (-10.677,61.394,2.092)
OP1: (-5.626,63.140,-4.204)
OP2: (-8.193,63.008,-4.191)
C2: (-10.163,60.359,1.347)
C1': (-8.696,59.675,-0.570)
C3': (-8.082,58.688,-2.584)
O5': (-6.860,61.791,-2.487)
O4': (-7.313,59.952,-0.740)
C5': (-6.320,60.546,-2.906)
P: (-6.905,63.057,-3.459)
C4': (-6.871,59.432,-2.028)
C2': (-9.236,59.497,-1.991)
O2': (-10.461,58.794,-2.012)
N1: (-9.326,60.740,0.304)
O4: (-10.973,63.555,2.662)
O2: (-10.447,59.201,1.609)
C6: (-9.044,62.077,0.072)
C5: (-9.559,63.067,0.815)
O3': (-8.068,57.338,-2.098)
N3: (-10.677,61.394,2.092)
OP1: (-5.626,63.140,-4.204)
OP2: (-8.193,63.008,-4.191)
C2: (-10.163,60.359,1.347)
C1': (-8.696,59.675,-0.570)
C3': (-8.082,58.688,-2.584)
O5': (-6.860,61.791,-2.487)
O4': (-7.313,59.952,-0.740)
C5': (-6.320,60.546,-2.906)
P: (-6.905,63.057,-3.459)
C4': (-6.871,59.432,-2.028)
C2': (-9.236,59.497,-1.991)
O2': (-10.461,58.794,-2.012)
N1: (-9.326,60.740,0.304)
O4: (-10.973,63.555,2.662)
O2: (-10.447,59.201,1.609)
C6: (-9.044,62.077,0.072)
C5: (-9.559,63.067,0.815)
O3': (-8.068,57.338,-2.098)
C4: (-13.223,57.389,2.815)
N3: (-12.670,58.635,3.053)
OP1: (-19.859,58.008,7.769)
OP2: (-19.367,56.600,5.692)
C2: (-13.246,59.678,3.740)
C1': (-15.269,60.468,5.002)
C3': (-17.509,60.892,5.817)
O5': (-17.638,58.135,6.598)
O4': (-15.320,60.060,6.353)
C5': (-17.126,59.029,7.572)
P: (-18.904,57.228,6.949)
C4': (-16.626,60.306,6.925)
C2': (-16.706,60.667,4.525)
O2': (-16.769,61.733,3.599)
N1: (-14.518,59.415,4.231)
O4: (-12.590,56.560,2.179)
O2: (-12.658,60.736,3.883)
C6: (-15.121,58.181,4.028)
C5: (-14.541,57.182,3.353)
O3': (-17.951,62.260,6.039)
N3: (-12.670,58.635,3.053)
OP1: (-19.859,58.008,7.769)
OP2: (-19.367,56.600,5.692)
C2: (-13.246,59.678,3.740)
C1': (-15.269,60.468,5.002)
C3': (-17.509,60.892,5.817)
O5': (-17.638,58.135,6.598)
O4': (-15.320,60.060,6.353)
C5': (-17.126,59.029,7.572)
P: (-18.904,57.228,6.949)
C4': (-16.626,60.306,6.925)
C2': (-16.706,60.667,4.525)
O2': (-16.769,61.733,3.599)
N1: (-14.518,59.415,4.231)
O4: (-12.590,56.560,2.179)
O2: (-12.658,60.736,3.883)
C6: (-15.121,58.181,4.028)
C5: (-14.541,57.182,3.353)
O3': (-17.951,62.260,6.039)
Image (generated by PyMOL):