Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:13127:12839
Extra
PDB:
ATOM 1 O3' U A3126 28.119 71.935 67.156 1.00 58.84 O
ATOM 2 P A A3127 29.526 72.610 67.585 1.00 62.87 P
ATOM 3 OP1 A A3127 30.310 71.555 68.330 1.00 62.29 O
ATOM 4 OP2 A A3127 29.235 73.894 68.261 1.00 63.58 O
ATOM 5 O5' A A3127 30.183 72.902 66.200 1.00 62.92 O
ATOM 6 C5' A A3127 30.340 71.856 65.269 1.00 62.35 C
ATOM 7 C4' A A3127 31.400 70.857 65.677 1.00 61.77 C
ATOM 8 O4' A A3127 30.735 69.637 66.085 1.00 61.22 O
ATOM 9 C3' A A3127 32.214 70.397 64.522 1.00 61.45 C
ATOM 10 O3' A A3127 33.057 69.398 65.027 1.00 60.90 O
ATOM 11 C2' A A3127 31.116 69.693 63.771 1.00 61.18 C
ATOM 12 O2' A A3127 31.544 68.952 62.663 1.00 60.78 O
ATOM 13 C1' A A3127 30.589 68.806 64.918 1.00 60.80 C
ATOM 14 N9 A A3127 29.164 68.410 64.797 1.00 60.73 N
ATOM 15 C8 A A3127 28.111 69.000 65.456 1.00 61.13 C
ATOM 16 N7 A A3127 26.922 68.526 65.242 1.00 61.00 N
ATOM 17 C5 A A3127 27.164 67.518 64.365 1.00 60.48 C
ATOM 18 C6 A A3127 26.264 66.612 63.758 1.00 60.13 C
ATOM 19 N6 A A3127 24.941 66.624 63.949 1.00 60.28 N
ATOM 20 N1 A A3127 26.788 65.688 62.931 1.00 59.64 N
ATOM 21 C2 A A3127 28.119 65.742 62.750 1.00 59.54 C
ATOM 22 N3 A A3127 29.060 66.556 63.256 1.00 59.83 N
ATOM 23 C4 A A3127 28.526 67.429 64.089 1.00 60.30 C
ATOM 24 P A A3128 34.644 69.450 64.954 1.00 61.03 P
ATOM 25 OP1 A A3128 35.119 70.644 65.721 1.00 61.61 O
ATOM 26 OP2 A A3128 35.036 69.289 63.523 1.00 60.91 O
ATOM 27 O5' A A3128 34.964 68.129 65.742 1.00 60.38 O
TER
ATOM 1 O3' A B2838 20.020 66.267 61.268 1.00 62.07 O
ATOM 2 P A B2839 20.064 65.161 60.125 1.00 62.92 P
ATOM 3 OP1 A B2839 19.425 65.752 58.989 1.00 63.32 O
ATOM 4 OP2 A B2839 19.516 63.921 60.657 1.00 62.40 O
ATOM 5 O5' A B2839 21.632 64.988 59.889 1.00 62.64 O
ATOM 6 C5' A B2839 22.569 65.728 60.675 1.00 62.85 C
ATOM 7 C4' A B2839 23.826 64.945 60.970 1.00 62.33 C
ATOM 8 O4' A B2839 23.865 64.594 62.371 1.00 62.15 O
ATOM 9 C3' A B2839 23.991 63.643 60.224 1.00 61.72 C
ATOM 10 O3' A B2839 24.642 63.848 58.993 1.00 61.78 O
ATOM 11 C2' A B2839 24.790 62.798 61.199 1.00 61.23 C
ATOM 12 O2' A B2839 26.155 63.135 61.137 1.00 61.24 O
ATOM 13 C1' A B2839 24.264 63.272 62.531 1.00 61.49 C
ATOM 14 N9 A B2839 23.094 62.506 62.957 1.00 61.27 N
ATOM 15 C8 A B2839 21.788 62.852 62.746 1.00 61.59 C
ATOM 16 N7 A B2839 20.945 61.979 63.235 1.00 61.29 N
ATOM 17 C5 A B2839 21.746 61.023 63.800 1.00 60.76 C
ATOM 18 C6 A B2839 21.430 59.865 64.488 1.00 60.29 C
ATOM 19 N6 A B2839 20.182 59.470 64.704 1.00 60.27 N
ATOM 20 N1 A B2839 22.463 59.118 64.927 1.00 59.84 N
ATOM 21 C2 A B2839 23.710 59.560 64.698 1.00 59.89 C
ATOM 22 N3 A B2839 24.126 60.645 64.070 1.00 60.32 N
ATOM 23 C4 A B2839 23.077 61.331 63.640 1.00 60.74 C
ATOM 24 P G B2840 24.631 62.740 57.841 1.00 52.18 P
ATOM 25 OP1 G B2840 25.679 63.134 56.849 1.00 52.28 O
ATOM 26 OP2 G B2840 23.240 62.607 57.392 1.00 52.30 O
ATOM 27 O5' G B2840 25.088 61.414 58.594 1.00 51.50 O
TER
ATOM 2 P A A3127 29.526 72.610 67.585 1.00 62.87 P
ATOM 3 OP1 A A3127 30.310 71.555 68.330 1.00 62.29 O
ATOM 4 OP2 A A3127 29.235 73.894 68.261 1.00 63.58 O
ATOM 5 O5' A A3127 30.183 72.902 66.200 1.00 62.92 O
ATOM 6 C5' A A3127 30.340 71.856 65.269 1.00 62.35 C
ATOM 7 C4' A A3127 31.400 70.857 65.677 1.00 61.77 C
ATOM 8 O4' A A3127 30.735 69.637 66.085 1.00 61.22 O
ATOM 9 C3' A A3127 32.214 70.397 64.522 1.00 61.45 C
ATOM 10 O3' A A3127 33.057 69.398 65.027 1.00 60.90 O
ATOM 11 C2' A A3127 31.116 69.693 63.771 1.00 61.18 C
ATOM 12 O2' A A3127 31.544 68.952 62.663 1.00 60.78 O
ATOM 13 C1' A A3127 30.589 68.806 64.918 1.00 60.80 C
ATOM 14 N9 A A3127 29.164 68.410 64.797 1.00 60.73 N
ATOM 15 C8 A A3127 28.111 69.000 65.456 1.00 61.13 C
ATOM 16 N7 A A3127 26.922 68.526 65.242 1.00 61.00 N
ATOM 17 C5 A A3127 27.164 67.518 64.365 1.00 60.48 C
ATOM 18 C6 A A3127 26.264 66.612 63.758 1.00 60.13 C
ATOM 19 N6 A A3127 24.941 66.624 63.949 1.00 60.28 N
ATOM 20 N1 A A3127 26.788 65.688 62.931 1.00 59.64 N
ATOM 21 C2 A A3127 28.119 65.742 62.750 1.00 59.54 C
ATOM 22 N3 A A3127 29.060 66.556 63.256 1.00 59.83 N
ATOM 23 C4 A A3127 28.526 67.429 64.089 1.00 60.30 C
ATOM 24 P A A3128 34.644 69.450 64.954 1.00 61.03 P
ATOM 25 OP1 A A3128 35.119 70.644 65.721 1.00 61.61 O
ATOM 26 OP2 A A3128 35.036 69.289 63.523 1.00 60.91 O
ATOM 27 O5' A A3128 34.964 68.129 65.742 1.00 60.38 O
TER
ATOM 1 O3' A B2838 20.020 66.267 61.268 1.00 62.07 O
ATOM 2 P A B2839 20.064 65.161 60.125 1.00 62.92 P
ATOM 3 OP1 A B2839 19.425 65.752 58.989 1.00 63.32 O
ATOM 4 OP2 A B2839 19.516 63.921 60.657 1.00 62.40 O
ATOM 5 O5' A B2839 21.632 64.988 59.889 1.00 62.64 O
ATOM 6 C5' A B2839 22.569 65.728 60.675 1.00 62.85 C
ATOM 7 C4' A B2839 23.826 64.945 60.970 1.00 62.33 C
ATOM 8 O4' A B2839 23.865 64.594 62.371 1.00 62.15 O
ATOM 9 C3' A B2839 23.991 63.643 60.224 1.00 61.72 C
ATOM 10 O3' A B2839 24.642 63.848 58.993 1.00 61.78 O
ATOM 11 C2' A B2839 24.790 62.798 61.199 1.00 61.23 C
ATOM 12 O2' A B2839 26.155 63.135 61.137 1.00 61.24 O
ATOM 13 C1' A B2839 24.264 63.272 62.531 1.00 61.49 C
ATOM 14 N9 A B2839 23.094 62.506 62.957 1.00 61.27 N
ATOM 15 C8 A B2839 21.788 62.852 62.746 1.00 61.59 C
ATOM 16 N7 A B2839 20.945 61.979 63.235 1.00 61.29 N
ATOM 17 C5 A B2839 21.746 61.023 63.800 1.00 60.76 C
ATOM 18 C6 A B2839 21.430 59.865 64.488 1.00 60.29 C
ATOM 19 N6 A B2839 20.182 59.470 64.704 1.00 60.27 N
ATOM 20 N1 A B2839 22.463 59.118 64.927 1.00 59.84 N
ATOM 21 C2 A B2839 23.710 59.560 64.698 1.00 59.89 C
ATOM 22 N3 A B2839 24.126 60.645 64.070 1.00 60.32 N
ATOM 23 C4 A B2839 23.077 61.331 63.640 1.00 60.74 C
ATOM 24 P G B2840 24.631 62.740 57.841 1.00 52.18 P
ATOM 25 OP1 G B2840 25.679 63.134 56.849 1.00 52.28 O
ATOM 26 OP2 G B2840 23.240 62.607 57.392 1.00 52.30 O
ATOM 27 O5' G B2840 25.088 61.414 58.594 1.00 51.50 O
TER
Atoms:
OP1: (30.310,71.555,68.330)
OP2: (29.235,73.894,68.261)
C3': (32.214,70.397,64.522)
C1': (30.589,68.806,64.918)
C5': (30.340,71.856,65.269)
O4': (30.735,69.637,66.085)
C8: (28.111,69.000,65.456)
O2': (31.544,68.952,62.663)
C6: (26.264,66.612,63.758)
C5: (27.164,67.518,64.365)
C4: (28.526,67.429,64.089)
P: (29.526,72.610,67.585)
C4': (31.400,70.857,65.677)
C2': (31.116,69.693,63.771)
C2: (28.119,65.742,62.750)
N1: (26.788,65.688,62.931)
N3: (29.060,66.556,63.256)
N6: (24.941,66.624,63.949)
N7: (26.922,68.526,65.242)
N9: (29.164,68.410,64.797)
O5': (30.183,72.902,66.200)
O3': (33.057,69.398,65.027)
OP2: (29.235,73.894,68.261)
C3': (32.214,70.397,64.522)
C1': (30.589,68.806,64.918)
C5': (30.340,71.856,65.269)
O4': (30.735,69.637,66.085)
C8: (28.111,69.000,65.456)
O2': (31.544,68.952,62.663)
C6: (26.264,66.612,63.758)
C5: (27.164,67.518,64.365)
C4: (28.526,67.429,64.089)
P: (29.526,72.610,67.585)
C4': (31.400,70.857,65.677)
C2': (31.116,69.693,63.771)
C2: (28.119,65.742,62.750)
N1: (26.788,65.688,62.931)
N3: (29.060,66.556,63.256)
N6: (24.941,66.624,63.949)
N7: (26.922,68.526,65.242)
N9: (29.164,68.410,64.797)
O5': (30.183,72.902,66.200)
O3': (33.057,69.398,65.027)
OP1: (19.425,65.752,58.989)
OP2: (19.516,63.921,60.657)
C3': (23.991,63.643,60.224)
C1': (24.264,63.272,62.531)
C5': (22.569,65.728,60.675)
O4': (23.865,64.594,62.371)
C8: (21.788,62.852,62.746)
O2': (26.155,63.135,61.137)
C6: (21.430,59.865,64.488)
C5: (21.746,61.023,63.800)
C4: (23.077,61.331,63.640)
P: (20.064,65.161,60.125)
C4': (23.826,64.945,60.970)
C2': (24.790,62.798,61.199)
C2: (23.710,59.560,64.698)
N1: (22.463,59.118,64.927)
N3: (24.126,60.645,64.070)
N6: (20.182,59.470,64.704)
N7: (20.945,61.979,63.235)
N9: (23.094,62.506,62.957)
O5': (21.632,64.988,59.889)
O3': (24.642,63.848,58.993)
OP2: (19.516,63.921,60.657)
C3': (23.991,63.643,60.224)
C1': (24.264,63.272,62.531)
C5': (22.569,65.728,60.675)
O4': (23.865,64.594,62.371)
C8: (21.788,62.852,62.746)
O2': (26.155,63.135,61.137)
C6: (21.430,59.865,64.488)
C5: (21.746,61.023,63.800)
C4: (23.077,61.331,63.640)
P: (20.064,65.161,60.125)
C4': (23.826,64.945,60.970)
C2': (24.790,62.798,61.199)
C2: (23.710,59.560,64.698)
N1: (22.463,59.118,64.927)
N3: (24.126,60.645,64.070)
N6: (20.182,59.470,64.704)
N7: (20.945,61.979,63.235)
N9: (23.094,62.506,62.957)
O5': (21.632,64.988,59.889)
O3': (24.642,63.848,58.993)
Image (generated by PyMOL):