Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12217:12553
Extra
PDB:
ATOM 1 O3' G A2216 37.166 -18.848 73.594 1.00 32.27 O
ATOM 2 P U A2217 38.189 -20.051 73.244 1.00 34.51 P
ATOM 3 OP1 U A2217 39.440 -19.777 73.963 1.00 34.51 O
ATOM 4 OP2 U A2217 38.250 -20.156 71.774 1.00 34.46 O
ATOM 5 O5' U A2217 37.491 -21.344 73.867 1.00 34.64 O
ATOM 6 C5' U A2217 37.435 -21.559 75.257 1.00 34.72 C
ATOM 7 C4' U A2217 36.024 -21.768 75.722 1.00 34.78 C
ATOM 8 O4' U A2217 35.407 -22.887 75.022 1.00 34.85 O
ATOM 9 C3' U A2217 35.858 -22.089 77.186 1.00 34.90 C
ATOM 10 O3' U A2217 35.815 -20.908 77.957 1.00 34.87 O
ATOM 11 C2' U A2217 34.543 -22.894 77.232 1.00 34.99 C
ATOM 12 O2' U A2217 33.438 -22.029 77.322 1.00 34.96 O
ATOM 13 C1' U A2217 34.510 -23.566 75.867 1.00 34.97 C
ATOM 14 N1 U A2217 34.927 -24.962 75.940 1.00 35.09 N
ATOM 15 C2 U A2217 34.012 -25.867 76.394 1.00 35.23 C
ATOM 16 O2 U A2217 32.891 -25.580 76.731 1.00 35.25 O
ATOM 17 N3 U A2217 34.462 -27.158 76.437 1.00 35.36 N
ATOM 18 C4 U A2217 35.712 -27.617 76.101 1.00 35.36 C
ATOM 19 O4 U A2217 35.920 -28.818 76.211 1.00 35.51 O
ATOM 20 C5 U A2217 36.607 -26.619 75.655 1.00 35.22 C
ATOM 21 C6 U A2217 36.186 -25.365 75.586 1.00 35.09 C
ATOM 22 P U A2218 36.949 -20.584 79.027 1.00 36.37 P
ATOM 23 OP1 U A2218 38.271 -21.049 78.475 1.00 36.35 O
ATOM 24 OP2 U A2218 36.476 -21.119 80.332 1.00 36.52 O
ATOM 25 O5' U A2218 36.960 -19.004 79.067 1.00 36.27 O
TER
ATOM 1 O3' G B2552 31.286 -37.648 74.043 1.00 41.22 O
ATOM 2 P A B2553 32.251 -36.884 75.038 1.00 37.87 P
ATOM 3 OP1 A B2553 33.276 -36.293 74.235 1.00 37.71 O
ATOM 4 OP2 A B2553 32.650 -37.851 76.101 1.00 38.08 O
ATOM 5 O5' A B2553 31.293 -35.734 75.634 1.00 37.74 O
ATOM 6 C5' A B2553 30.225 -36.040 76.531 1.00 37.87 C
ATOM 7 C4' A B2553 30.505 -35.514 77.913 1.00 37.85 C
ATOM 8 O4' A B2553 30.761 -34.108 77.846 1.00 37.62 O
ATOM 9 C3' A B2553 29.408 -35.671 78.960 1.00 37.99 C
ATOM 10 O3' A B2553 29.713 -36.745 79.846 1.00 38.21 O
ATOM 11 C2' A B2553 29.431 -34.325 79.735 1.00 37.83 C
ATOM 12 O2' A B2553 29.587 -34.457 81.136 1.00 37.95 O
ATOM 13 C1' A B2553 30.614 -33.580 79.136 1.00 37.63 C
ATOM 14 N9 A B2553 30.406 -32.150 78.995 1.00 37.42 N
ATOM 15 C8 A B2553 29.320 -31.405 79.310 1.00 37.39 C
ATOM 16 N7 A B2553 29.457 -30.145 78.971 1.00 37.20 N
ATOM 17 C5 A B2553 30.689 -30.073 78.386 1.00 37.10 C
ATOM 18 C6 A B2553 31.371 -29.030 77.817 1.00 36.91 C
ATOM 19 N6 A B2553 30.908 -27.785 77.723 1.00 36.78 N
ATOM 20 N1 A B2553 32.570 -29.317 77.310 1.00 36.87 N
ATOM 21 C2 A B2553 33.040 -30.536 77.378 1.00 37.02 C
ATOM 22 N3 A B2553 32.514 -31.606 77.892 1.00 37.21 N
ATOM 23 C4 A B2553 31.300 -31.295 78.381 1.00 37.24 C
ATOM 24 P A B2554 28.527 -37.733 80.303 1.00 42.79 P
ATOM 25 OP1 A B2554 29.128 -38.806 81.154 1.00 43.01 O
ATOM 26 OP2 A B2554 27.781 -38.114 79.077 1.00 42.80 O
ATOM 27 O5' A B2554 27.640 -36.784 81.183 1.00 42.73 O
TER
ATOM 2 P U A2217 38.189 -20.051 73.244 1.00 34.51 P
ATOM 3 OP1 U A2217 39.440 -19.777 73.963 1.00 34.51 O
ATOM 4 OP2 U A2217 38.250 -20.156 71.774 1.00 34.46 O
ATOM 5 O5' U A2217 37.491 -21.344 73.867 1.00 34.64 O
ATOM 6 C5' U A2217 37.435 -21.559 75.257 1.00 34.72 C
ATOM 7 C4' U A2217 36.024 -21.768 75.722 1.00 34.78 C
ATOM 8 O4' U A2217 35.407 -22.887 75.022 1.00 34.85 O
ATOM 9 C3' U A2217 35.858 -22.089 77.186 1.00 34.90 C
ATOM 10 O3' U A2217 35.815 -20.908 77.957 1.00 34.87 O
ATOM 11 C2' U A2217 34.543 -22.894 77.232 1.00 34.99 C
ATOM 12 O2' U A2217 33.438 -22.029 77.322 1.00 34.96 O
ATOM 13 C1' U A2217 34.510 -23.566 75.867 1.00 34.97 C
ATOM 14 N1 U A2217 34.927 -24.962 75.940 1.00 35.09 N
ATOM 15 C2 U A2217 34.012 -25.867 76.394 1.00 35.23 C
ATOM 16 O2 U A2217 32.891 -25.580 76.731 1.00 35.25 O
ATOM 17 N3 U A2217 34.462 -27.158 76.437 1.00 35.36 N
ATOM 18 C4 U A2217 35.712 -27.617 76.101 1.00 35.36 C
ATOM 19 O4 U A2217 35.920 -28.818 76.211 1.00 35.51 O
ATOM 20 C5 U A2217 36.607 -26.619 75.655 1.00 35.22 C
ATOM 21 C6 U A2217 36.186 -25.365 75.586 1.00 35.09 C
ATOM 22 P U A2218 36.949 -20.584 79.027 1.00 36.37 P
ATOM 23 OP1 U A2218 38.271 -21.049 78.475 1.00 36.35 O
ATOM 24 OP2 U A2218 36.476 -21.119 80.332 1.00 36.52 O
ATOM 25 O5' U A2218 36.960 -19.004 79.067 1.00 36.27 O
TER
ATOM 1 O3' G B2552 31.286 -37.648 74.043 1.00 41.22 O
ATOM 2 P A B2553 32.251 -36.884 75.038 1.00 37.87 P
ATOM 3 OP1 A B2553 33.276 -36.293 74.235 1.00 37.71 O
ATOM 4 OP2 A B2553 32.650 -37.851 76.101 1.00 38.08 O
ATOM 5 O5' A B2553 31.293 -35.734 75.634 1.00 37.74 O
ATOM 6 C5' A B2553 30.225 -36.040 76.531 1.00 37.87 C
ATOM 7 C4' A B2553 30.505 -35.514 77.913 1.00 37.85 C
ATOM 8 O4' A B2553 30.761 -34.108 77.846 1.00 37.62 O
ATOM 9 C3' A B2553 29.408 -35.671 78.960 1.00 37.99 C
ATOM 10 O3' A B2553 29.713 -36.745 79.846 1.00 38.21 O
ATOM 11 C2' A B2553 29.431 -34.325 79.735 1.00 37.83 C
ATOM 12 O2' A B2553 29.587 -34.457 81.136 1.00 37.95 O
ATOM 13 C1' A B2553 30.614 -33.580 79.136 1.00 37.63 C
ATOM 14 N9 A B2553 30.406 -32.150 78.995 1.00 37.42 N
ATOM 15 C8 A B2553 29.320 -31.405 79.310 1.00 37.39 C
ATOM 16 N7 A B2553 29.457 -30.145 78.971 1.00 37.20 N
ATOM 17 C5 A B2553 30.689 -30.073 78.386 1.00 37.10 C
ATOM 18 C6 A B2553 31.371 -29.030 77.817 1.00 36.91 C
ATOM 19 N6 A B2553 30.908 -27.785 77.723 1.00 36.78 N
ATOM 20 N1 A B2553 32.570 -29.317 77.310 1.00 36.87 N
ATOM 21 C2 A B2553 33.040 -30.536 77.378 1.00 37.02 C
ATOM 22 N3 A B2553 32.514 -31.606 77.892 1.00 37.21 N
ATOM 23 C4 A B2553 31.300 -31.295 78.381 1.00 37.24 C
ATOM 24 P A B2554 28.527 -37.733 80.303 1.00 42.79 P
ATOM 25 OP1 A B2554 29.128 -38.806 81.154 1.00 43.01 O
ATOM 26 OP2 A B2554 27.781 -38.114 79.077 1.00 42.80 O
ATOM 27 O5' A B2554 27.640 -36.784 81.183 1.00 42.73 O
TER
Atoms:
C4: (35.712,-27.617,76.101)
N3: (34.462,-27.158,76.437)
OP1: (39.440,-19.777,73.963)
OP2: (38.250,-20.156,71.774)
C2: (34.012,-25.867,76.394)
C1': (34.510,-23.566,75.867)
C3': (35.858,-22.089,77.186)
O5': (37.491,-21.344,73.867)
O4': (35.407,-22.887,75.022)
C5': (37.435,-21.559,75.257)
P: (38.189,-20.051,73.244)
C4': (36.024,-21.768,75.722)
C2': (34.543,-22.894,77.232)
O2': (33.438,-22.029,77.322)
N1: (34.927,-24.962,75.940)
O4: (35.920,-28.818,76.211)
O2: (32.891,-25.580,76.731)
C6: (36.186,-25.365,75.586)
C5: (36.607,-26.619,75.655)
O3': (35.815,-20.908,77.957)
N3: (34.462,-27.158,76.437)
OP1: (39.440,-19.777,73.963)
OP2: (38.250,-20.156,71.774)
C2: (34.012,-25.867,76.394)
C1': (34.510,-23.566,75.867)
C3': (35.858,-22.089,77.186)
O5': (37.491,-21.344,73.867)
O4': (35.407,-22.887,75.022)
C5': (37.435,-21.559,75.257)
P: (38.189,-20.051,73.244)
C4': (36.024,-21.768,75.722)
C2': (34.543,-22.894,77.232)
O2': (33.438,-22.029,77.322)
N1: (34.927,-24.962,75.940)
O4: (35.920,-28.818,76.211)
O2: (32.891,-25.580,76.731)
C6: (36.186,-25.365,75.586)
C5: (36.607,-26.619,75.655)
O3': (35.815,-20.908,77.957)
OP1: (33.276,-36.293,74.235)
OP2: (32.650,-37.851,76.101)
C3': (29.408,-35.671,78.960)
C1': (30.614,-33.580,79.136)
C5': (30.225,-36.040,76.531)
O4': (30.761,-34.108,77.846)
C8: (29.320,-31.405,79.310)
O2': (29.587,-34.457,81.136)
C6: (31.371,-29.030,77.817)
C5: (30.689,-30.073,78.386)
C4: (31.300,-31.295,78.381)
P: (32.251,-36.884,75.038)
C4': (30.505,-35.514,77.913)
C2': (29.431,-34.325,79.735)
C2: (33.040,-30.536,77.378)
N1: (32.570,-29.317,77.310)
N3: (32.514,-31.606,77.892)
N6: (30.908,-27.785,77.723)
N7: (29.457,-30.145,78.971)
N9: (30.406,-32.150,78.995)
O5': (31.293,-35.734,75.634)
O3': (29.713,-36.745,79.846)
OP2: (32.650,-37.851,76.101)
C3': (29.408,-35.671,78.960)
C1': (30.614,-33.580,79.136)
C5': (30.225,-36.040,76.531)
O4': (30.761,-34.108,77.846)
C8: (29.320,-31.405,79.310)
O2': (29.587,-34.457,81.136)
C6: (31.371,-29.030,77.817)
C5: (30.689,-30.073,78.386)
C4: (31.300,-31.295,78.381)
P: (32.251,-36.884,75.038)
C4': (30.505,-35.514,77.913)
C2': (29.431,-34.325,79.735)
C2: (33.040,-30.536,77.378)
N1: (32.570,-29.317,77.310)
N3: (32.514,-31.606,77.892)
N6: (30.908,-27.785,77.723)
N7: (29.457,-30.145,78.971)
N9: (30.406,-32.150,78.995)
O5': (31.293,-35.734,75.634)
O3': (29.713,-36.745,79.846)
Image (generated by PyMOL):